This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.63367 (82 seq.)
>W1710877438
LMQC01000012
Actinomycetota
Modestobacter sp. Leaf380 [LMQC]
691766
691681
-
Ser
GGA
[ENA]
¡û
>W1711697415
MSKJ01000003
Actinomycetota
Actinomyces oris [MSKJ]
32561
32474
-
Ser
GGA
[ENA]
¡û
>WENV180231850
OBCO01000015
[OBCO] synthetic metagenome; purchased from BEI Resources HM-276D
286835
286922
+
Ser
GGA
[ENA]
¢þ
>WENV180421004
OBVP01001943
[OBVP] human gut metagenome; faeces
1537
1452
-
Ser
GGA
[ENA]
¢þ
>WENV180704774
ODEJ01000055
[ODEJ] human metagenome; G_DNA_Tongue dorsum
30254
30167
-
Ser
GGA
[ENA]
¢þ
>WENV180705729
ODEJ01016695
[ODEJ] human metagenome; G_DNA_Tongue dorsum
1284
1371
+
Ser
GGA
[ENA]
¢þ
>WENV180725602
ODGS01000430
[ODGS] human metagenome; G_DNA_Attached/Keratinized gingiva
11859
11772
-
Ser
GGA
[ENA]
¢þ
>WENV180739285
ODHD01024786
[ODHD] human metagenome; G_DNA_Supragingival plaque
87
1
-
Ser
GGA
[ENA]
¢þ
>WENV180791550
ODIU01015407
[ODIU] human metagenome; G_DNA_Buccal mucosa
159
246
+
Ser
GGA
[ENA]
¢þ
>WENV180864524
ODLH01056385
[ODLH] human metagenome; G_DNA_Tongue dorsum
29
116
+
Ser
GGA
[ENA]
¢þ
>WENV180973277
ODUW01002798
[ODUW] human metagenome; G_DNA_Supragingival plaque
2476
2561
+
Ser
GGA
[ENA]
¢þ
>WENV180973441
ODUW01005874
[ODUW] human metagenome; G_DNA_Supragingival plaque
2618
2531
-
Ser
GGA
[ENA]
¢þ
>WENV180973578
ODUW01008527
[ODUW] human metagenome; G_DNA_Supragingival plaque
653
740
+
Ser
GGA
[ENA]
¢þ
>WENV180974281
ODUW01175395
[ODUW] human metagenome; G_DNA_Supragingival plaque
86
1
-
Ser
GGA
[ENA]
¢þ
>WENV180985086
ODVJ01000606
[ODVJ] human metagenome; G_DNA_Tongue dorsum
2678
2591
-
Ser
GGA
[ENA]
¢þ
>WENV180985791
ODVJ01017237
[ODVJ] human metagenome; G_DNA_Tongue dorsum
232
145
-
Ser
GGA
[ENA]
¢þ
>WENV180986399
ODVJ01172713
[ODVJ] human metagenome; G_DNA_Tongue dorsum
1
88
+
Ser
GGA
[ENA]
¢þ
>WENV181052888
ODYG01073709
[ODYG] human metagenome; G_DNA_Tongue dorsum
156
243
+
Ser
GGA
[ENA]
¢þ
>WENV181068709
ODZZ01001207
[ODZZ] human metagenome; G_DNA_Tongue dorsum
7887
7802
-
Ser
GGA
[ENA]
¢þ
>WENV181068804
ODZZ01002708
[ODZZ] human metagenome; G_DNA_Tongue dorsum
86
1
-
Ser
GGA
[ENA]
¢þ
>WENV181069136
ODZZ01013737
[ODZZ] human metagenome; G_DNA_Tongue dorsum
125
38
-
Ser
GGA
[ENA]
¢þ
>WENV181069294
ODZZ01027054
[ODZZ] human metagenome; G_DNA_Tongue dorsum
125
38
-
Ser
GGA
[ENA]
¢þ
>WENV181107416
OEEI01007034
[OEEI] human metagenome; G_DNA_Supragingival plaque
3967
3880
-
Ser
GGA
[ENA]
¢þ
>WENV181107500
OEEI01009598
[OEEI] human metagenome; G_DNA_Supragingival plaque
808
722
-
Ser
GGA
[ENA]
¢þ
>WENV181107592
OEEI01013196
[OEEI] human metagenome; G_DNA_Supragingival plaque
2301
2214
-
Ser
GGA
[ENA]
¢þ
>WENV181107631
OEEI01014704
[OEEI] human metagenome; G_DNA_Supragingival plaque
1814
1727
-
Ser
GGA
[ENA]
¢þ
>WENV181107805
OEEI01023598
[OEEI] human metagenome; G_DNA_Supragingival plaque
6
93
+
Ser
GGA
[ENA]
¢þ
>WENV181156044
OEIE01002272
[OEIE] human metagenome; G_DNA_Supragingival plaque
5248
5161
-
Ser
GGA
[ENA]
¢þ
>WENV181156063
OEIE01002601
[OEIE] human metagenome; G_DNA_Supragingival plaque
2168
2255
+
Ser
GGA
[ENA]
¢þ
>WENV181156241
OEIE01006527
[OEIE] human metagenome; G_DNA_Supragingival plaque
1384
1470
+
Ser
GGA
[ENA]
¢þ
>WENV181221062
OFCU01000065
[OFCU] metagenome; Human gut stool
24142
24229
+
Ser
GGA
[ENA]
¢þ
>W141233319
BAVQ01000006
Actinomycetota
Tomitella biformata AHU 1821 [BAVQ]
32694
32607
-
Ser
GGA
[ENA]
¡û
>W141241068
CAGY01000003
Actinomycetota
Actinomyces sp. ph3 [CAGY]
114299
114384
+
Ser
GGA
[ENA]
¡û
>WENV182798909
OJTP01000003
[OJTP] human gut metagenome; human gut
156223
156308
+
Ser
GGA
[ENA]
¢þ
>WENV182813717
OJYG01000001
[OJYG] human gut metagenome; human gut
179357
179272
-
Ser
GGA
[ENA]
¢þ
>WENV182822997
OKBQ01000253
[OKBQ] human gut metagenome; human gut
1399
1486
+
Ser
GGA
[ENA]
¢þ
>WENV182846427
OKJM01000415
[OKJM] human gut metagenome; human gut
1564
1651
+
Ser
GGA
[ENA]
¢þ
>WENV182960846
OKWK01000025
[OKWK] human gut metagenome; stool
202116
202202
+
Ser
GGA
[ENA]
¢þ
>WENV183264416
OLRR01020569
[OLRR] human gut metagenome; faeces
1205
1118
-
Ser
GGA
[ENA]
¢þ
>WENV183510564
OMHP01000392
[OMHP] human oral metagenome; human oral
585
499
-
Ser
GGA
[ENA]
¢þ
>WENV183731894
PJTU01000003
[PJTU] soil metagenome; Soil enriched on wood chips: beechwood xylan treatment
350547
350633
+
Ser
GGA
[ENA]
¢þ
>WENV170689382
LFRM01291709
[LFRM] anaerobic digester metagenome; pool of bioreactors CSTR01a, CSTR02a, and CSTR03a; thermophilic anaerobic digestion of cattle
973
1060
+
Ser
GGA
[ENA]
¢þ
>WENV170717157
LSQX01025965
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
23700
23615
-
Ser
GGA
[ENA]
¢þ
>C181212698
LS483427
Actinomycetota
Arcanobacterium haemolyticum NCTC8452 [LS483427]
424437
424352
-
Ser
GGA
-
¡û
>C191125294
CP034438
Actinomycetota
Flaviflexus salsibiostraticola KCTC 33148 [CP034438]
2028346
2028259
-
Ser
GGA
-
¡û
>W141558038
JHVP01000008
Actinomycetota
Geodermatophilaceae bacterium URHA0031 [JHVP]
143633
143548
-
Ser
GGA
[ENA]
¡û
>W1910324843
FSGQ01000165
Actinomycetota
Mycobacteroides abscessus subsp. abscessus 42 [FSGQ]
5555
5642
+
Ser
GGA
[ENA]
¡û
>C09101584
CP001618
Actinomycetota
Beutenbergia cavernae DSM 12333 [CP001618]
598307
598220
-
Ser
GGA
[Ensembl]
¡û
>W1911076318
NMVK01000007
Actinomycetota
Enemella evansiae NML 150272 [NMVK]
115954
116041
+
Ser
GGA
[ENA]
¡û
>W1911076364
NMVL01000017
Actinomycetota
Enemella evansiae NML 140250 [NMVL]
17314
17401
+
Ser
GGA
[ENA]
¡û
>W1911076436
NMVM01000004
Actinomycetota
Enemella evansiae NML 090529 [NMVM]
281178
281091
-
Ser
GGA
[ENA]
¡û
>W1911076549
NMVP01000003
Actinomycetota
Enemella evansiae NML 020265 [NMVP]
72315
72228
-
Ser
GGA
[ENA]
¡û
>W1911076583
NMVQ01000001
Actinomycetota
Enemella dayhoffiae NML 130396 [NMVQ]
31532
31617
+
Ser
GGA
[ENA]
¡û
>W1911597262
PNHU01000002
Actinomycetota
Gleimia hominis UMB0859 [PNHU]
299789
299874
+
Ser
GGA
[ENA]
¡û
>W1911685423
QKTK01000001
Actinomycetota
Curtobacterium sp. MCBD17_008 [QKTK]
120947
121032
+
Ser
GGA
[ENA]
¡û
>W1911685607
QKTN01000005
Actinomycetota
Curtobacterium sp. MCBD17_034 [QKTN]
202668
202755
+
Ser
GGA
[ENA]
¡û
>W1911685736
QKTQ01000005
Actinomycetota
Curtobacterium sp. MCBD17_028 [QKTQ]
154026
154113
+
Ser
GGA
[ENA]
¡û
>W1911709301
QPKK01000071
Actinomycetota
Desertihabitans aurantiacus CPCC 204711 [QPKK]
7239
7325
+
Ser
GGA
[ENA]
¡û
>W1810186618
PKHA01000006
Actinomycetota
Actinomyces urogenitalis UMB0319 [PKHA]
34971
34884
-
Ser
GGA
[ENA]
¡û
>W1810675534
QKLF01000004
Actinomycetota
Curtobacterium sp. MCJR17_055 [QKLF]
253191
253106
-
Ser
GGA
[ENA]
¡û
>W1810679035
QKNV01000305
Actinomycetota
Modestobacter versicolor CP153-2 [QKNV]
3269
3184
-
Ser
GGA
[ENA]
¡û
>W1810681220
QKSR01000006
Actinomycetota
Curtobacterium sp. MCSS17_015 [QKSR]
19497
19412
-
Ser
GGA
[ENA]
¡û
>W1810744401
QOUI01000011
Actinomycetota
Desertihabitans brevis 16Sb5-5 [QOUI]
146845
146759
-
Ser
GGA
[ENA]
¡û
>W1810757087
QPGM01000005
Actinomycetota
Microbacterium sp. JB110 [QPGM]
295300
295386
+
Ser
GGA
[ENA]
¡û
>W1810860845
QTTL01000001
Actinomycetota
Agromyces sp. OV429 [QTTL]
1327839
1327752
-
Ser
GGA
[ENA]
¡û
>W1810861619
QTTZ01000001
Actinomycetota
Microbacterium trichothecenolyticum ZKA46 [QTTZ]
4108699
4108612
-
Ser
GGA
[ENA]
¡û
>W1510010608
BBLW01000010
Actinomycetota
Demequina phytophila NBRC 109391 [BBLW]
1589
1676
+
Ser
GGA
[ENA]
¡û
>W1510010761
BBMA01000002
Actinomycetota
Demequina silvatica NBRC 109395 [BBMA]
386224
386137
-
Ser
GGA
[ENA]
¡û
>W1510544484
CSSZ01000008
Actinomycetota
Flaviflexus massiliensis SIT4 [CSSZ]
863897
863812
-
Ser
GGA
[ENA]
¡û
>W1511307092
JPMX01000068
Actinomycetota
Modestobacter caceresii KNN45-2b [JPMX]
3246
3161
-
Ser
GGA
[ENA]
¡û
>W11143503
AEPY01000003
Actinomycetota
Mobiluncus curtisii ATCC 51333 [AEPY]
202463
202550
+
Ser
GGA
[ENA]
¡û
>C121016190
FO203431
Actinomycetota
Modestobacter marinus BC501 [FO203431]
552693
552778
+
Ser
GGA
[Ensembl]
¡û
>C161069121
CP014232
Actinomycetota
Actinomyces oris T14V [CP014232]
951053
951140
+
Ser
GGA
[Ensembl]
¡û
>W121081422
AKFT01000036
Actinomycetota
Actinomyces massiliensis F0489 [AKFT]
24840
24753
-
Ser
GGA
[ENA]
¡û
>W1610715598
LLVT01000001
Actinomycetota
Schaalia odontolytica odontolyticus [LLVT]
844651
844738
+
Ser
GGA
[ENA]
¡û
>W1610739784
LMQC01000012
Actinomycetota
Modestobacter sp. Leaf380 [LMQC]
691766
691681
-
Ser
GGA
[ENA]
¡û
>W1710506062
FMUH01000001
Actinomycetota
Klenkia marina DSM 45722 [FMUH]
740436
740347
-
Ser
GGA
[ENA]
¡û
>W1710515944
FNCF01000001
Actinomycetota
Klenkia brasiliensis [FNCF]
558860
558775
-
Ser
GGA
[ENA]
¡û
>W1710524126
FNIM01000002
Actinomycetota
Actinomyces ruminicola [FNIM]
148490
148403
-
Ser
GGA
[ENA]
¡û
>W1710524383
FNIR01000008
Actinomycetota
Klenkia soli [FNIR]
44639
44724
+
Ser
GGA
[ENA]
¡û
>W1710533064
FNQV01000003
Actinomycetota
Bowdeniella nasicola [FNQV]
13269
13182
-
Ser
GGA
[ENA]
¡û
>W1710558762
FOMD01000002
Actinomycetota
Klenkia taihuensis [FOMD]
574855
574767
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK