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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.63783 (69 seq.)
>W1710863701
LMFI01000010
Actinomycetota
Nocardioides sp. Root140 [LMFI]
1521767
1521851
+
Leu
CAG
[ENA]
¡û
>W1710867826
LMIP01000011
Actinomycetota
Nocardioides sp. Root79 [LMIP]
944046
943962
-
Leu
CAG
[ENA]
¡û
>W1710874079
LMNH01000004
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
587759
587843
+
Leu
CAG
[ENA]
¡û
>W1710874887
LMNY01000003
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
115769
115685
-
Leu
CAG
[ENA]
¡û
>W1710880870
LMSQ01000002
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
123301
123217
-
Leu
CAG
[ENA]
¡û
>W1710880918
LMSR01000002
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
16627
16543
-
Leu
CAG
[ENA]
¡û
>W1711126744
LUPG01000367
Actinomycetota
Nocardioides sp. REDSEA-S25_B9 [LUPG]
460
376
-
Leu
CAG
[ENA]
¡û
>W1711126758
LUPH01000018
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
6491
6575
+
Leu
CAG
[ENA]
¡û
>W1711126834
LUPI01000100
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
3808
3724
-
Leu
CAG
[ENA]
¡û
>W1711126878
LUPK01000006
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
3808
3724
-
Leu
CAG
[ENA]
¡û
>W1711126953
LUPL01000179
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
909
825
-
Leu
CAG
[ENA]
¡û
>W1711127068
LUPO01000052
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
3810
3726
-
Leu
CAG
[ENA]
¡û
>W1711793208
MWLL01000012
Actinomycetota
Kineosporia sp. R_H_3 [MWLL]
12491
12405
-
Leu
CAG
[ENA]
¡û
>W1711793308
MWLN01000076
Actinomycetota
Kineosporia sp. A_224 A 224 [MWLN]
1471
1557
+
Leu
CAG
[ENA]
¡û
>W1712084129
NHQT01000005
Actinomycetota
Nocardioides sp. XL1 [NHQT]
11425
11341
-
Leu
CAG
[ENA]
¡û
>W131229394
AUGT01000020
Actinomycetota
Nocardioides halotolerans DSM 19273 [AUGT]
14244
14330
+
Leu
CAG
[ENA]
¡û
>WENV180000095
CZKB01000027
[CZKB] metagenome; liquid mineral medium
256734
256648
-
Leu
CAG
[ENA]
¢þ
>WENV180291491
OBIV01067636
[OBIV] soil metagenome; Clay
431
347
-
Leu
CAG
[ENA]
¢þ
>WENV180343422
OBLK01014360
[OBLK] soil metagenome; Clay
138
54
-
Leu
CAG
[ENA]
¢þ
>WENV180345330
OBLM01256040
[OBLM] soil metagenome; soil
108
22
-
Leu
CAG
[ENA]
¢þ
>WENV181295324
OFHI01020145
[OFHI] soil metagenome; Clay
435
349
-
Leu
CAG
[ENA]
¢þ
>W141277545
JAER01000017
Actinomycetota
Nocardioides sp. J54 [JAER]
69034
69118
+
Leu
CAG
[ENA]
¡û
>WENV170229294
CEQG01098976
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
375
291
-
Leu
CAG
[ENA]
¢þ
>WENV170372999
CETS01155589
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
101
185
+
Leu
CAG
[ENA]
¢þ
>WENV170728662
LULF01000090
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
3810
3726
-
Leu
CAG
[ENA]
¢þ
>WENV170735171
LULL01000143
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
3808
3724
-
Leu
CAG
[ENA]
¢þ
>WENV170737535
LULO01000489
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
3808
3724
-
Leu
CAG
[ENA]
¢þ
>WENV170740386
LULR01007709
[LULR] marine metagenome; Red Sea water column Station 108 - depth 500m
2106
2190
+
Leu
CAG
[ENA]
¢þ
>WENV170758975
LUMS01000715
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
5591
5675
+
Leu
CAG
[ENA]
¢þ
>WENV170761942
LUMW01000154
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
3808
3724
-
Leu
CAG
[ENA]
¢þ
>C181119551
CP025581
Actinomycetota
Nocardioides houyundeii 78 [CP025581]
29871
29957
+
Leu
CAG
-
¡û
>C191104174
CP033324
Actinomycetota
Nocardioides pantholopis 603 [CP033324]
34782
34868
+
Leu
CAG
-
¡û
>C191150893
CP036403
Actinomycetota
Ornithinimicrobium sp. HY006 [CP036403]
72707
72791
+
Leu
CAG
-
¡û
>C191159898
CP038462
Actinomycetota
Nocardioides daphniae JCM 16608 [CP038462]
28490
28574
+
Leu
CAG
-
¡û
>C191182458
CP040748
Actinomycetota
Nocardioides jishulii dk3136 [CP040748]
35913
35997
+
Leu
CAG
-
¡û
>C191186687
CP041091
Actinomycetota
Nocardioides sambongensis KUDC 5002 [CP041091]
3771417
3771501
+
Leu
CAG
-
¡û
>W141564496
JIAV01000009
Actinomycetota
Nocardioides sp. URHA0032 [JIAV]
197213
197299
+
Leu
CAG
[ENA]
¡û
>W09103269
AAJB01000025
Actinomycetota
Nocardioides sp. JS614 [AAJB]
53124
53040
-
Leu
CAG
[ENA]
¡û
>W1910141238
BIFF01000002
Actinomycetota
Nocardioides sp. LS1 [BIFF]
1249601
1249515
-
Leu
CAG
[ENA]
¡û
>W1911495871
OBQK01000030
Actinomycetota
Ornithinimicrobium cerasi USBA17B2 [OBQK]
4936
5022
+
Leu
CAG
[ENA]
¡û
>W1911672115
QGDD01000005
Actinomycetota
Nocardioides silvaticus CCTCC AB 2018079 [QGDD]
215221
215305
+
Leu
CAG
[ENA]
¡û
>W1911768155
QXGH01000020
Actinomycetota
Nocardioides immobilis CCTCC AB 2017083 [QXGH]
47564
47648
+
Leu
CAG
[ENA]
¡û
>W1911817425
QZMN01000006
Actinomycetota
Ornithinimicrobium cerasi CPCC 203383 [QZMN]
214967
214881
-
Leu
CAG
[ENA]
¡û
>W1810462722
PZYZ01000004
Actinomycetota
Nocardioides sediminis KCTC 19271 [PZYZ]
72246
72332
+
Leu
CAG
[ENA]
¡û
>W1810503991
QBKO01000003
Actinomycetota
Nocardioides sp. CF167 [QBKO]
222889
222805
-
Leu
CAG
[ENA]
¡û
>W1810539892
QDGZ01000001
Actinomycetota
Nocardioides gansuensis WSJ-1 [QDGZ]
18327
18243
-
Leu
CAG
[ENA]
¡û
>W1810577872
QEOO01000016
Actinomycetota
Nocardioides speluncae YIM ART13 [QEOO]
533233
533319
+
Leu
CAG
[ENA]
¡û
>W1810756464
QPFD01000006
Actinomycetota
Nocardioides houyundeii 601 [QPFD]
402594
402678
+
Leu
CAG
[ENA]
¡û
>W1510015695
BBRF01000001
Actinomycetota
Demequina aurantiaca NBRC 106265 [BBRF]
773557
773473
-
Leu
CAG
[ENA]
¡û
>C161082860
CP015079
Actinomycetota
Nocardioides dokdonensis FR1436 [CP015079]
1358871
1358955
+
Leu
CAG
[Ensembl]
¡û
>W1610049569
BBFC01000105
Actinomycetota
Nocardioides sp. JCM 18999 [BBFC]
2125
2041
-
Leu
CAG
[ENA]
¡û
>W1610051043
BBGL01000026
Actinomycetota
Nocardioides aromaticivorans JCM 11674 [BBGL]
3733
3649
-
Leu
CAG
[ENA]
¡û
>W1610726047
LMFI01000010
Actinomycetota
Nocardioides sp. Root140 [LMFI]
1521767
1521851
+
Leu
CAG
[ENA]
¡û
>W1610730172
LMIP01000011
Actinomycetota
Nocardioides sp. Root79 [LMIP]
944046
943962
-
Leu
CAG
[ENA]
¡û
>W1610736425
LMNH01000004
Actinomycetota
Nocardioides sp. Leaf285 [LMNH]
587759
587843
+
Leu
CAG
[ENA]
¡û
>W1610737233
LMNY01000003
Actinomycetota
Nocardioides sp. Leaf307 [LMNY]
115769
115685
-
Leu
CAG
[ENA]
¡û
>W1610743216
LMSQ01000002
Actinomycetota
Nocardioides sp. Soil796 [LMSQ]
123301
123217
-
Leu
CAG
[ENA]
¡û
>W1610743264
LMSR01000002
Actinomycetota
Nocardioides sp. Soil797 [LMSR]
16627
16543
-
Leu
CAG
[ENA]
¡û
>W1610937858
LUPG01000367
Actinomycetota
Nocardioides sp. REDSEA-S25_B9 [LUPG]
460
376
-
Leu
CAG
[ENA]
¡û
>W1610937872
LUPH01000018
Actinomycetota
Nocardioides sp. REDSEA-S28_B4 [LUPH]
6491
6575
+
Leu
CAG
[ENA]
¡û
>W1610937948
LUPI01000100
Actinomycetota
Nocardioides sp. REDSEA-S30_B4 [LUPI]
3808
3724
-
Leu
CAG
[ENA]
¡û
>W1610937992
LUPK01000006
Actinomycetota
Nocardioides sp. REDSEA-S33_B3 [LUPK]
3808
3724
-
Leu
CAG
[ENA]
¡û
>W1610938067
LUPL01000179
Actinomycetota
Nocardioides sp. REDSEA-S34_B5 [LUPL]
909
825
-
Leu
CAG
[ENA]
¡û
>W1610938182
LUPO01000052
Actinomycetota
Nocardioides sp. REDSEA-S39_B2 [LUPO]
3810
3726
-
Leu
CAG
[ENA]
¡û
>W1710045968
BBFC01000105
Actinomycetota
Nocardioides sp. JCM 18999 [BBFC]
2125
2041
-
Leu
CAG
[ENA]
¡û
>W1710047442
BBGL01000026
Actinomycetota
Nocardioides aromaticivorans JCM 11674 [BBGL]
3733
3649
-
Leu
CAG
[ENA]
¡û
>W1710520322
FNFN01000002
Actinomycetota
Nocardioides sp. YR527 [FNFN]
716149
716063
-
Leu
CAG
[ENA]
¡û
>W1710534304
FNRT01000002
Actinomycetota
Nocardioides exalbidus [FNRT]
1453619
1453533
-
Leu
CAG
[ENA]
¡û
>W1710569419
FOUK01000004
Actinomycetota
Pimelobacter simplex [FOUK]
328681
328765
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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