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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.64592 (25 seq.)
>A171000747
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
2588949
2588864
-
Leu
CAG
-
¡û
>A171002614
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
775004
775089
+
Leu
CAG
-
¡û
>A171005804
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
2380445
2380530
+
Leu
CAG
-
¡û
>A171007165
FR746099
Euryarchaeota
Haloquadratum walsbyi C23 DSM 16854 [FR746099]
2357381
2357296
-
Leu
CAG
-
¡û
>A171007247
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
2294665
2294580
-
Leu
CAG
-
¡û
>WENV170008681
APHM01000945
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
588
672
+
Leu
CAG
[ENA]
¢þ
>WENV170009141
APHM01021440
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
6359
6274
-
Leu
CAG
[ENA]
¢þ
>WENV170009180
APHM01021501
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
3732
3817
+
Leu
CAG
[ENA]
¢þ
>At0746
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
51834
51918
+
Leu
CAG
[Ensembl]
¡û
>At0878
AM180088
Euryarchaeota
Haloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
2240879
2240795
-
Leu
CAG
[Ensembl]
¡û
>W1910175096
BIXZ01000001
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
821572
821487
-
Leu
CAG
[ENA]
¡û
>W1910228390
FNOF01000006
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
14305
14390
+
Leu
CAG
[ENA]
¡û
>W1910617587
LIUF01000001
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
33026
32941
-
Leu
CAG
[ENA]
¡û
>W1911709464
QPLN01000002
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
530146
530231
+
Leu
CAG
[ENA]
¡û
>W1911709606
QPLQ01000002
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
353893
353808
-
Leu
CAG
[ENA]
¡û
>W1911770008
QXIK01000001
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
339247
339162
-
Leu
CAG
[ENA]
¡û
>W1610000819
ABTY01000001
Euryarchaeota
Halomicrobium mukohataei DSM 12286 [ABTY]
1231906
1231821
-
Leu
CAG
[ENA]
¡û
>W1610003271
AFNT02000021
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
45275
45360
+
Leu
CAG
[ENA]
¡û
>W1610003629
AGCY01000017
Euryarchaeota
halophilic archaeon J07HX64 [AGCY]
588
672
+
Leu
CAG
[ENA]
¡û
>W1610014199
AOLR01000021
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
80197
80112
-
Leu
CAG
[ENA]
¡û
>W1610014278
AOLW01000019
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
96789
96704
-
Leu
CAG
[ENA]
¡û
>W1610014318
AOLX01000015
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
360423
360338
-
Leu
CAG
[ENA]
¡û
>W1610019101
ARPX01000196
Euryarchaeota
Haloquadratum walsbyi J07HQW1 [ARPX]
23925
23840
-
Leu
CAG
[ENA]
¡û
>W1610019125
ARPY01000159
Euryarchaeota
Haloquadratum walsbyi J07HQW2 [ARPY]
82342
82257
-
Leu
CAG
[ENA]
¡û
>W1610061891
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
52859
52944
+
Leu
CAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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