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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.64633 (32 seq.)
>W1710854521
LLXO01000008
Gammaproteobacteria
Entomohabitans teleogrylli [LLXO]
106557
106471
-
Leu
TAA
[ENA]
¡û
>W1710940825
LOOI01000004
Gammaproteobacteria
Escherichia coli [LOOI]
65630
65716
+
Leu
TAA
[ENA]
¡û
>WENV170001408
AGFS01032763
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
26
112
+
Leu
TAA
[ENA]
¢þ
>WENV170022549
BCQK01019244
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
383
297
-
Leu
TAA
[ENA]
¢þ
>C181198707
CP031282
Gammaproteobacteria
Escherichia fergusonii 40A [CP031282]
1879386
1879300
-
Leu
TAA
-
¡û
>C191154012
CP037864
Gammaproteobacteria
Citrobacter arsenatis LY-1 [CP037864]
3138543
3138457
-
Leu
TAA
-
¡û
>C191160356
CP038469
Gammaproteobacteria
Citrobacter tructae SNU WT2 [CP038469]
1496138
1496052
-
Leu
TAA
-
¡û
>C191182928
CP040805
Gammaproteobacteria
Escherichia fergusonii EFCF056 [CP040805]
2578436
2578350
-
Leu
TAA
-
¡û
>W09111107
ABWL01000025
Gammaproteobacteria
Citrobacter youngae ATCC 29220 [ABWL]
125894
125808
-
Leu
TAA
[ENA]
¡û
>W1910105777
BFZR01000029
Gammaproteobacteria
Escherichia coli KS-P003 [BFZR]
168701
168787
+
Leu
TAA
[ENA]
¡û
>W1910135775
BICK01000018
Gammaproteobacteria
Escherichia coli 27-C97-A [BICK]
77636
77722
+
Leu
TAA
[ENA]
¡û
>C09105905
CU928158
Gammaproteobacteria
Escherichia fergusonii ATCC 35469 ATCC 35469T [CU928158]
1222604
1222690
+
Leu
TAA
[Ensembl]
¡û
>W1910971559
NKAF01000011
Gammaproteobacteria
Escherichia coli MOD1-EC1392 [NKAF]
7763
7849
+
Leu
TAA
[ENA]
¡û
>W1911006230
NLGY01000010
Gammaproteobacteria
Escherichia coli MOD1-EC5715 [NLGY]
18593
18679
+
Leu
TAA
[ENA]
¡û
>W1911064715
NMLZ01000061
Gammaproteobacteria
Escherichia coli MOD1-EC6597 [NMLZ]
2890
2804
-
Leu
TAA
[ENA]
¡û
>W1810021365
BGRQ01000002
Gammaproteobacteria
Escherichia coli TUM18581 [BGRQ]
396620
396534
-
Leu
TAA
[ENA]
¡û
>W1810259268
PQKR01000002
Gammaproteobacteria
Escherichia sp. ESNIH1 [PQKR]
559319
559405
+
Leu
TAA
[ENA]
¡û
>W1810260338
PQLY01000010
Gammaproteobacteria
Citrobacter freundii S1284 [PQLY]
136467
136381
-
Leu
TAA
[ENA]
¡û
>W1810307739
PTRZ01000012
Gammaproteobacteria
Escherichia fergusonii MOD1-EC6349 [PTRZ]
26407
26493
+
Leu
TAA
[ENA]
¡û
>W1810309257
PTSU01000004
Gammaproteobacteria
Escherichia fergusonii MOD1-EC5837 [PTSU]
60181
60267
+
Leu
TAA
[ENA]
¡û
>W1810321552
PUBX01000004
Gammaproteobacteria
Escherichia fergusonii YH17132 [PUBX]
158538
158624
+
Leu
TAA
[ENA]
¡û
>W1810321648
PUBY01000003
Gammaproteobacteria
Escherichia fergusonii YH17130 [PUBY]
206867
206953
+
Leu
TAA
[ENA]
¡û
>W1510011896
BBMZ01000010
Gammaproteobacteria
Pseudescherichia vulneris NBRC 102420 [BBMZ]
168999
168913
-
Leu
TAA
[ENA]
¡û
>WENV11101480
AGFS01032763
[AGFS] ant fungus garden metagenome; Atta colombica fungus garden top
26
112
+
Leu
TAA
[ENA]
¡û
>W11138264
AEIA01000012
Gammaproteobacteria
Escherichia fergusonii B253 [AEIA]
544023
543937
-
Leu
TAA
[ENA]
¡û
>W1511555241
JZWN01000023
Gammaproteobacteria
Escherichia fergusonii GTA-294-5-RBA-P2 [JZWN]
193543
193457
-
Leu
TAA
[ENA]
¡û
>W1511555460
JZWQ01000027
Gammaproteobacteria
Escherichia fergusonii GTA-1753-4-RBA-P5 [JZWQ]
200893
200979
+
Leu
TAA
[ENA]
¡û
>W11150709
AEVY01000013
Gammaproteobacteria
Escherichia fergusonii ECD227 [AEVY]
217791
217877
+
Leu
TAA
[ENA]
¡û
>W1610005609
AKYH01000008
Gammaproteobacteria
Escherichia coli EPEC11 [AKYH]
42445
42531
+
Leu
TAA
[ENA]
¡û
>W1610716798
LLXO01000008
Gammaproteobacteria
Entomohabitans teleogrylli [LLXO]
106557
106471
-
Leu
TAA
[ENA]
¡û
>W1610796949
LOOI01000004
Gammaproteobacteria
Escherichia coli [LOOI]
65630
65716
+
Leu
TAA
[ENA]
¡û
>W1710005275
AKYH01000008
Gammaproteobacteria
Escherichia coli EPEC11 [AKYH]
42445
42531
+
Leu
TAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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