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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65075 (48 seq.)
>W1710864805
LMGE01000001
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
120805
120891
+
Leu
CAA
[ENA]
¡û
>W1710865489
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
1434063
1434149
+
Leu
CAA
[ENA]
¡û
>W1710866109
LMHF01000012
Gammaproteobacteria
Lysobacter sp. Root667 [LMHF]
48631
48717
+
Leu
CAA
[ENA]
¡û
>W1710866484
LMHM01000016
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
847258
847172
-
Leu
CAA
[ENA]
¡û
>W1710867578
LMIK01000001
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
229477
229563
+
Leu
CAA
[ENA]
¡û
>W1710868608
LMJF01000001
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
1443212
1443298
+
Leu
CAA
[ENA]
¡û
>W1710868989
LMJO01000001
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
831333
831419
+
Leu
CAA
[ENA]
¡û
>W1711386688
MEFQ01000120
Gammaproteobacteria
Xanthomonadaceae bacterium SCN 69-48 [MEFQ]
9242
9156
-
Leu
CAA
[ENA]
¡û
>W1711424172
MIDV01000142
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYA1_FULL_69_10 [MIDV]
48153
48239
+
Leu
CAA
[ENA]
¡û
>W1711424201
MIDW01000088
Gammaproteobacteria
Xanthomonadales bacterium RIFOXYD1_FULL_69_11 [MIDW]
934
848
-
Leu
CAA
[ENA]
¡û
>W131244889
CAQP01000144
Gammaproteobacteria
Lysobacter antibioticus HS124 [CAQP]
51286
51200
-
Leu
CAA
[ENA]
¡û
>WENV180297640
OBJA01055781
[OBJA] soil metagenome; sediment, water from around vicinity
657
571
-
Leu
CAA
[ENA]
¢þ
>WENV181298263
OFHL01065303
[OFHL] soil metagenome; Clay
619
705
+
Leu
CAA
[ENA]
¢þ
>W141149632
AWZR01000010
Gammaproteobacteria
Luteimonas sp. J29 [AWZR]
1902
1816
-
Leu
CAA
[ENA]
¡û
>W141282818
JAJA01000003
Gammaproteobacteria
Lysobacter capsici AZ78 [JAJA]
170636
170550
-
Leu
CAA
[ENA]
¡û
>WENV182947613
OKVM01005440
[OKVM] human gut metagenome; human gut
493
407
-
Leu
CAA
[ENA]
¢þ
>WENV170018756
BBPD01000685
[BBPD] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
104
18
-
Leu
CAA
[ENA]
¢þ
>WENV170019705
BBPE01000143
[BBPE] groundwater metagenome; The Cedars highly-alkaline serpentinizing springs in California
27044
27130
+
Leu
CAA
[ENA]
¢þ
>C181001019
AP014940
Gammaproteobacteria
Lysobacter enzymogenes M497-1 [AP014940]
2571602
2571688
+
Leu
CAA
-
¡û
>C181081811
CP023465
Gammaproteobacteria
Lysobacter capsici KNU-14 [CP023465]
2599950
2600036
+
Leu
CAA
-
¡û
>C191139397
CP035376
Gammaproteobacteria
Luteimonas sp. YGD11-2 [CP035376]
1312617
1312531
-
Leu
CAA
-
¡û
>C191165702
CP039383
Gammaproteobacteria
Luteimonas yindakuii S-1072 [CP039383]
1282063
1281977
-
Leu
CAA
-
¡û
>C191181081
CP040656
Gammaproteobacteria
Lysobacter enzymogenes YC36 [CP040656]
3407147
3407061
-
Leu
CAA
-
¡û
>C191189069
CP041242
Gammaproteobacteria
Lysobacter alkalisoli SJ-36 [CP041242]
1621383
1621469
+
Leu
CAA
-
¡û
>W141713892
JMTZ01000011
Gammaproteobacteria
Lysobacter antibioticus [JMTZ]
28900
28986
+
Leu
CAA
[ENA]
¡û
>W1911770898
QXJI01000001
Gammaproteobacteria
Lysobacter tabacisoli C8-1 [QXJI]
610300
610214
-
Leu
CAA
[ENA]
¡û
>W1810692812
QLKV01000012
Gammaproteobacteria
Thermomonas haemolytica HAMBI_2467 [QLKV]
2606
2520
-
Leu
CAA
[ENA]
¡û
>W1511348440
JRKJ01000002
Gammaproteobacteria
Lysobacter dokdonensis DS-58 [JRKJ]
190028
190114
+
Leu
CAA
[ENA]
¡û
>W1511595019
LBMI01000005
Gammaproteobacteria
Lysobacter capsici X2-3 [LBMI]
15210
15296
+
Leu
CAA
[ENA]
¡û
>C161031609
CP011130
Gammaproteobacteria
Lysobacter capsici 55 [CP011130]
2616294
2616380
+
Leu
CAA
[Ensembl]
¡û
>C161031639
CP011131
Gammaproteobacteria
Lysobacter gummosus 3.2.11 [CP011131]
3179409
3179495
+
Leu
CAA
[Ensembl]
¡û
>C161052064
CP013140
Gammaproteobacteria
Lysobacter enzymogenes C3 [CP013140]
3211686
3211600
-
Leu
CAA
[Ensembl]
¡û
>C161052078
CP013141
Gammaproteobacteria
Lysobacter antibioticus ATCC 29479 [CP013141]
3000419
3000505
+
Leu
CAA
-
¡û
>W1610027332
AVPU01000004
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
168632
168546
-
Leu
CAA
[ENA]
¡û
>W1610207395
FCOY01000006
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
914405
914491
+
Leu
CAA
[ENA]
¡û
>W1610727151
LMGE01000001
Gammaproteobacteria
Lysobacter sp. Root559 [LMGE]
120805
120891
+
Leu
CAA
[ENA]
¡û
>W1610727835
LMGS01000001
Gammaproteobacteria
Lysobacter sp. Root604 [LMGS]
1434063
1434149
+
Leu
CAA
[ENA]
¡û
>W1610728455
LMHF01000012
Gammaproteobacteria
Lysobacter sp. Root667 [LMHF]
48631
48717
+
Leu
CAA
[ENA]
¡û
>W1610728830
LMHM01000016
Gammaproteobacteria
Lysobacter sp. Root690 [LMHM]
847258
847172
-
Leu
CAA
[ENA]
¡û
>W1610729924
LMIK01000001
Gammaproteobacteria
Lysobacter sp. Root76 [LMIK]
229477
229563
+
Leu
CAA
[ENA]
¡û
>W1610730954
LMJF01000001
Gammaproteobacteria
Lysobacter sp. Root916 [LMJF]
1443212
1443298
+
Leu
CAA
[ENA]
¡û
>W1610731335
LMJO01000001
Gammaproteobacteria
Lysobacter sp. Root983 [LMJO]
831333
831419
+
Leu
CAA
[ENA]
¡û
>W1710023566
AVPU01000004
Gammaproteobacteria
Lysobacter daejeonensis GH1-9 [AVPU]
168632
168546
-
Leu
CAA
[ENA]
¡û
>W1710208029
FCOY01000006
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
914405
914491
+
Leu
CAA
[ENA]
¡û
>W1710529772
FNOG01000006
Gammaproteobacteria
Lysobacter enzymogenes [FNOG]
181355
181441
+
Leu
CAA
[ENA]
¡û
>W1710531722
FNPT01000001
Gammaproteobacteria
Lysobacter sp. yr284 [FNPT]
309413
309327
-
Leu
CAA
[ENA]
¡û
>W1710567409
FOSS01000003
Gammaproteobacteria
Lysobacter sp. cf310 [FOSS]
502989
503075
+
Leu
CAA
[ENA]
¡û
>W1710582960
FQUK01000003
Gammaproteobacteria
Thermomonas hydrothermalis [FQUK]
76454
76540
+
Leu
CAA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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