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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653528 (44 seq.)
>W1711136329
LVAC01000002
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
325216
325290
+
Gly
GCC
[ENA]
¡û
>W1711136346
LVAC01000022
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
230536
230462
-
Gly
GCC
[ENA]
¡û
>C171057214
CP017111
Campylobacterota
Sulfurospirillum halorespirans DSM 13726 DSM 13726; PCE-M2 [CP017111]
1620387
1620313
-
Gly
GCC
-
¡û
>C171057226
CP017111
Campylobacterota
Sulfurospirillum halorespirans DSM 13726 DSM 13726; PCE-M2 [CP017111]
88759
88685
-
Gly
GCC
-
¡û
>C171118621
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
1635709
1635635
-
Gly
GCC
-
¡û
>C171118633
CP021416
Campylobacterota
Sulfurospirillum sp. SL2-1 [CP021416]
66677
66603
-
Gly
GCC
-
¡û
>WENV180241814
OBDI01013409
[OBDI] metagenome; diffuse fluid
287
213
-
Gly
GCC
[ENA]
¢þ
>WENV180582191
OCMO01008826
[OCMO] metagenome; diffuse fluid
385
311
-
Gly
GCC
[ENA]
¢þ
>WENV180583159
OCNB01004418
[OCNB] metagenome; diffuse fluid
565
491
-
Gly
GCC
[ENA]
¢þ
>WENV180634335
OCRB01002579
[OCRB] metagenome; diffuse fluid
2
76
+
Gly
GCC
[ENA]
¢þ
>WENV181208515
OFBB01024046
[OFBB] metagenome; hydrothermal vent
421
347
-
Gly
GCC
[ENA]
¢þ
>WENV181209533
OFBE01007720
[OFBE] metagenome; hydrothermal vent
258
332
+
Gly
GCC
[ENA]
¢þ
>WENV181210406
OFBH01002088
[OFBH] metagenome; hydrothermal vent
1742
1816
+
Gly
GCC
[ENA]
¢þ
>WENV181211104
OFBJ01009054
[OFBJ] metagenome; hydrothermal vent
226
300
+
Gly
GCC
[ENA]
¢þ
>WENV181211912
OFBM01001628
[OFBM] metagenome; hydrothermal vent
698
624
-
Gly
GCC
[ENA]
¢þ
>WENV181213178
OFBU01017869
[OFBU] metagenome; hydrothermal vent
227
301
+
Gly
GCC
[ENA]
¢þ
>WENV181224083
OFDD01018487
[OFDD] metagenome; hydrothermal vent
383
457
+
Gly
GCC
[ENA]
¢þ
>WENV181225067
OFDH01002891
[OFDH] metagenome; hydrothermal vent
644
718
+
Gly
GCC
[ENA]
¢þ
>WENV181226406
OFDL01001653
[OFDL] metagenome; hydrothermal vent
1650
1724
+
Gly
GCC
[ENA]
¢þ
>WENV181228313
OFDO01009820
[OFDO] metagenome; hydrothermal vent
343
417
+
Gly
GCC
[ENA]
¢þ
>WENV183702737
PDVJ01000007
[PDVJ] alkali sediment metagenome; glacial lake sediment
13642
13568
-
Gly
GCC
[ENA]
¢þ
>WENV170640732
JFJP01024224
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
720
794
+
Gly
GCC
[ENA]
¢þ
>WENV170640744
JFJP01024307
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4611
4685
+
Gly
GCC
[ENA]
¢þ
>WENV170674638
LBBO01005353
[LBBO] hydrothermal vent metagenome; microbial mat from marine hydrothermal vent chimney in a deep-sea hydrothermal vent field
89
15
-
Gly
GCC
[ENA]
¢þ
>C181078346
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
1557697
1557623
-
Gly
GCC
-
¡û
>C181078358
CP023275
Campylobacterota
Sulfurospirillum diekertiae JPD-1 [CP023275]
63043
62969
-
Gly
GCC
-
¡û
>W09110081
ABUV01000001
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [ABUV]
702454
702528
+
Gly
GCC
[ENA]
¡û
>W141814428
JQGK01000001
Campylobacterota
Sulfurospirillum sp. SCADC [JQGK]
6693
6767
+
Gly
GCC
[ENA]
¡û
>W141814458
JQGK01000019
Campylobacterota
Sulfurospirillum sp. SCADC [JQGK]
707
633
-
Gly
GCC
[ENA]
¡û
>C151018389
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
1609391
1609317
-
Gly
GCC
[Ensembl]
¡û
>C151018402
CP007201
Campylobacterota
Sulfurospirillum multivorans DSM 12446 [CP007201]
84514
84440
-
Gly
GCC
[Ensembl]
¡û
>W1510014706
BBQE01000001
Campylobacterota
Sulfurospirillum cavolei NBRC 109482 [BBQE]
128342
128416
+
Gly
GCC
[ENA]
¡û
>W1510014723
BBQE01000005
Campylobacterota
Sulfurospirillum cavolei NBRC 109482 [BBQE]
181718
181644
-
Gly
GCC
[ENA]
¡û
>W1510014762
BBQF01000001
Campylobacterota
Sulfurospirillum arsenophilum NBRC 109478 [BBQF]
65031
64957
-
Gly
GCC
[ENA]
¡û
>W1510014769
BBQF01000002
Campylobacterota
Sulfurospirillum arsenophilum NBRC 109478 [BBQF]
213671
213597
-
Gly
GCC
[ENA]
¡û
>C10111344
CP001816
Campylobacterota
Sulfurospirillum deleyianum DSM 6946 [CP001816]
39112
39038
-
Gly
GCC
[Ensembl]
¡û
>W1511365474
JSEC01000007
Campylobacterota
Sulfurospirillum sp. MES [JSEC]
39151
39077
-
Gly
GCC
[ENA]
¡û
>W1511365475
JSEC01000011
Campylobacterota
Sulfurospirillum sp. MES [JSEC]
27254
27328
+
Gly
GCC
[ENA]
¡û
>C121011178
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
1282753
1282679
-
Gly
GCC
[Ensembl]
¡û
>C121011190
CP003333
Campylobacterota
Sulfurospirillum barnesii SES-3 [CP003333]
50926
50852
-
Gly
GCC
[Ensembl]
¡û
>C161001404
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
1223819
1223893
+
Gly
GCC
-
¡û
>C161001433
AP014724
Campylobacterota
Sulfurospirillum cavolei UCH003 [AP014724]
12906
12832
-
Gly
GCC
-
¡û
>W1610947449
LVAC01000002
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
325216
325290
+
Gly
GCC
[ENA]
¡û
>W1610947466
LVAC01000022
Campylobacterota
Campylobacterales bacterium Epsilon_01 [LVAC]
230536
230462
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK