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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653715 (29 seq.)
>W131052787
AMZI01000138
Bacillota
Pelosinus sp. HCF1 [AMZI]
73282
73208
-
Gly
GCC
[ENA]
¡û
>WENV182000816
OHAY01000639
[OHAY] human gut metagenome; faeces
34665
34739
+
Gly
GCC
[ENA]
¢þ
>C08005417
CP000930
Bacillota
Heliomicrobium modesticaldum Ice1 Ice1; ATCC 51547 [CP000930]
2287291
2287365
+
Gly
GCC
[Ensembl]
¡û
>WENV170002342
AGTN01000073
[AGTN] bioreactor metagenome; poplar biomass
242
316
+
Gly
GCC
[ENA]
¢þ
>WENV170644132
JMBV01043850
[JMBV] anaerobic digester metagenome; mesophilic anaerobic digester inoculated with municipal waste water sludge and fed with
223
149
-
Gly
GCC
[ENA]
¢þ
>WENV170648795
JRHI01002306
[JRHI] sediment metagenome; sediment from deep within a dark volcanic ice cave with no known source of introduced
8685
8611
-
Gly
GCC
[ENA]
¢þ
>WENV170723665
LSQX01277629
[LSQX] anaerobic digester metagenome; 4 biogas reactors fed with cattle manure at either 37C or 55C with and without the addition
46
120
+
Gly
GCC
[ENA]
¢þ
>WENV170967661
MTKW01002749
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
530
456
-
Gly
GCC
[ENA]
¢þ
>WENV170968321
MTKW01008145
[MTKW] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
4419
4345
-
Gly
GCC
[ENA]
¢þ
>W09108835
ABTQ01000010
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
18229
18303
+
Gly
GCC
[ENA]
¡û
>W09108865
ABTQ01000059
Bacillota
Desulfofarcimen acetoxidans DSM 771 [ABTQ]
10086
10012
-
Gly
GCC
[ENA]
¡û
>W1911661995
QFGA01000001
Bacillota
Pelotomaculum schinkii HH [QFGA]
12720
12794
+
Gly
GCC
[ENA]
¡û
>W1911662090
QFGB01000087
Bacillota
Pelotomaculum sp. FP [QFGB]
2426
2352
-
Gly
GCC
[ENA]
¡û
>W1810004264
BFAV01000162
Bacillota
Desulfocucumis palustris NAW-5 [BFAV]
23811
23885
+
Gly
GCC
[ENA]
¡û
>C151074839
CP010978
Bacillota
Pelosinus fermentans JBW45 [CP010978]
1908355
1908429
+
Gly
GCC
[Ensembl]
¡û
>C10104808
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
1422146
1422220
+
Gly
GCC
[Ensembl]
¡û
>C10104819
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
1917760
1917834
+
Gly
GCC
[Ensembl]
¡û
>C10104835
CP001720
Bacillota
Desulfofarcimen acetoxidans DSM 771 [CP001720]
3765641
3765567
-
Gly
GCC
[Ensembl]
¡û
>W1511429907
JUEB01000015
Bacillota
Peptococcaceae bacterium BICA1-7 [JUEB]
213989
213915
-
Gly
GCC
[ENA]
¡û
>W1511564185
LADN01000023
Bacillota
Peptococcaceae bacterium BRH_c4a [LADN]
62489
62563
+
Gly
GCC
[ENA]
¡û
>W1511564257
LADO01000064
Bacillota
Peptococcaceae bacterium BRH_c4b [LADO]
2052
1978
-
Gly
GCC
[ENA]
¡û
>W1511564497
LADT01000084
Bacillota
Clostridiaceae bacterium BRH_c20a [LADT]
5352
5426
+
Gly
GCC
[ENA]
¡û
>W121101501
AKVJ01000004
Bacillota
Pelosinus fermentans B4 [AKVJ]
95785
95711
-
Gly
GCC
[ENA]
¡û
>W121101567
AKVK01000249
Bacillota
Pelosinus fermentans B3 [AKVK]
1602
1676
+
Gly
GCC
[ENA]
¡û
>W121101626
AKVM01000051
Bacillota
Pelosinus fermentans A11 [AKVM]
68595
68669
+
Gly
GCC
[ENA]
¡û
>W121101686
AKVN01000010
Bacillota
Pelosinus fermentans DSM 17108 [AKVN]
71667
71741
+
Gly
GCC
[ENA]
¡û
>W121101739
AKVO01000006
Bacillota
Pelosinus fermentans JBW45 [AKVO]
16606
16680
+
Gly
GCC
[ENA]
¡û
>W1710526280
FNKF01000002
Bacillota
Pelosinus fermentans [FNKF]
1854850
1854924
+
Gly
GCC
[ENA]
¡û
>W1710568571
FOTS01000012
Bacillota
Pelosinus propionicus DSM 13327 [FOTS]
105850
105924
+
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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