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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653773 (44 seq.)
>W1711272467
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
636223
636149
-
Met
CAT
[ENA]
¡û
>W1711272505
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
511114
511188
+
Met
CAT
[ENA]
¡û
>C007586
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
655617
655691
+
Met
CAT
[Ensembl]
¡û
>C007633
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
568336
568410
+
Met
CAT
[Ensembl]
¡û
>C171019740
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
682403
682477
+
Met
CAT
-
¡û
>C171063611
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
622609
622683
+
Met
CAT
-
¡û
>C171100342
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
606293
606367
+
Met
CAT
-
¡û
>C171100387
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
563971
564045
+
Met
CAT
-
¡û
>C171100432
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
648513
648587
+
Met
CAT
-
¡û
>C171100478
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
614369
614443
+
Met
CAT
-
¡û
>C171101353
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
624132
624206
+
Met
CAT
-
¡û
>C171101920
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
545741
545815
+
Met
CAT
-
¡û
>C171101966
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
530583
530657
+
Met
CAT
-
¡û
>C171102507
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
581599
581673
+
Met
CAT
-
¡û
>WENV170659016
JXWO01000037
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
27018
27092
+
Met
CAT
[ENA]
¢þ
>C181003125
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
546866
546940
+
Met
CAT
-
¡û
>C191160368
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
601908
601982
+
Met
CAT
-
¡û
>W141809050
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
569382
569308
-
Met
CAT
[ENA]
¡û
>C141007756
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
572135
572209
+
Met
CAT
[Ensembl]
¡û
>W1810107553
PHFC01000052
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
2121
2047
-
Met
CAT
[ENA]
¡û
>W1810107620
PHFD01000414
Chloroflexota
Dehalococcoides mccartyi H1-3-2.001 [PHFD]
352
278
-
Met
CAT
[ENA]
¡û
>W1810266187
PQVQ01000023
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
340276
340350
+
Met
CAT
[ENA]
¡û
>W1810603259
QGLC01000009
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
400479
400553
+
Met
CAT
[ENA]
¡û
>W1810603301
QGLD01000008
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
487086
487160
+
Met
CAT
[ENA]
¡û
>C151003199
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
589161
589235
+
Met
CAT
[Ensembl]
¡û
>C151015116
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
628326
628400
+
Met
CAT
[Ensembl]
¡û
>C151015163
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
596659
596733
+
Met
CAT
[Ensembl]
¡û
>C151015209
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
546951
547025
+
Met
CAT
[Ensembl]
¡û
>W10109925
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
392393
392467
+
Met
CAT
[ENA]
¡û
>C10105200
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
593641
593715
+
Met
CAT
[Ensembl]
¡û
>C10105246
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
600894
600968
+
Met
CAT
[Ensembl]
¡û
>W11112362
ADBO01000001
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
392393
392467
+
Met
CAT
[ENA]
¡û
>C161000321
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
626047
626121
+
Met
CAT
-
¡û
>C161031492
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
587376
587450
+
Met
CAT
[Ensembl]
¡û
>C131012531
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
688736
688810
+
Met
CAT
[Ensembl]
¡û
>C131012577
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
623279
623353
+
Met
CAT
[Ensembl]
¡û
>W1610521005
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
499166
499240
+
Met
CAT
[ENA]
¡û
>W1610521048
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
133395
133321
-
Met
CAT
[ENA]
¡û
>W1610541310
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
539827
539901
+
Met
CAT
[ENA]
¡û
>W1611031995
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
636223
636149
-
Met
CAT
[ENA]
¡û
>W1611032033
LZFK01000006
Chloroflexota
Dehalococcoides mccartyi [LZFK]
511114
511188
+
Met
CAT
[ENA]
¡û
>W1710617255
JGVX01000006
Chloroflexota
Dehalococcoides mccartyi [JGVX]
499166
499240
+
Met
CAT
[ENA]
¡û
>W1710617298
JGYD01000026
Chloroflexota
Dehalococcoides mccartyi [JGYD]
133395
133321
-
Met
CAT
[ENA]
¡û
>W1710644441
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
539827
539901
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK