This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653781 (46 seq.)
>W1711272477
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
71546
71472
-
Met
CAT
[ENA]
¡û
>W1711272528
LZFK01000016
Chloroflexota
Dehalococcoides mccartyi [LZFK]
226755
226829
+
Met
CAT
[ENA]
¡û
>C007595
CP000688
Chloroflexota
Dehalococcoides mccartyi [CP000688]
1112963
1113037
+
Met
CAT
[Ensembl]
¡û
>C007642
AJ965256
Chloroflexota
Dehalococcoides mccartyi CBDB1 [AJ965256]
1006848
1006922
+
Met
CAT
[Ensembl]
¡û
>C007688
CP000027
Chloroflexota
Dehalococcoides mccartyi 195 [CP000027]
1197631
1197705
+
Met
CAT
[Ensembl]
¡û
>C171019749
CP013074
Chloroflexota
Dehalococcoides mccartyi CG3 [CP013074]
1220739
1220813
+
Met
CAT
-
¡û
>C171063620
CP017572
Chloroflexota
Dehalococcoides mccartyi [CP017572]
1090718
1090792
+
Met
CAT
-
¡û
>C171100351
CP019865
Chloroflexota
Dehalococcoides mccartyi KBTCE2 [CP019865]
1105768
1105842
+
Met
CAT
-
¡û
>C171100396
CP019866
Chloroflexota
Dehalococcoides mccartyi KBTCE3 [CP019866]
1048175
1048249
+
Met
CAT
-
¡û
>C171100441
CP019867
Chloroflexota
Dehalococcoides mccartyi KBDCA1 [CP019867]
1174914
1174988
+
Met
CAT
-
¡û
>C171100487
CP019868
Chloroflexota
Dehalococcoides mccartyi KBDCA2 [CP019868]
1140770
1140844
+
Met
CAT
-
¡û
>C171101362
CP019946
Chloroflexota
Dehalococcoides mccartyi KBDCA3 [CP019946]
1089579
1089653
+
Met
CAT
-
¡û
>C171101929
CP019968
Chloroflexota
Dehalococcoides mccartyi KBVC1 [CP019968]
998109
998183
+
Met
CAT
-
¡û
>C171101975
CP019969
Chloroflexota
Dehalococcoides mccartyi KBVC2 [CP019969]
1015821
1015895
+
Met
CAT
-
¡û
>C171102516
CP019999
Chloroflexota
Dehalococcoides mccartyi KBTCE1 [CP019999]
1066981
1067055
+
Met
CAT
-
¡û
>W08002847
ABFQ01000007
Chloroflexota
Dehalococcoides mccartyi VS [ABFQ]
15374
15448
+
Met
CAT
[ENA]
¡û
>WENV170658987
JXWO01000008
[JXWO] soil metagenome; anaerobic bioreactor containing WBC-2 dechlorinating consortium enriched on 1,1,2,2-TeCA amended
12713
12787
+
Met
CAT
[ENA]
¢þ
>C181003134
AP017649
Chloroflexota
Dehalococcoides mccartyi UCH-ATV1 [AP017649]
1061221
1061295
+
Met
CAT
-
¡û
>C191160377
CP038470
Chloroflexota
Dehalococcoides mccartyi FL2 [CP038470]
1087608
1087682
+
Met
CAT
-
¡û
>W141809059
JPRE01000005
Chloroflexota
Dehalococcoides mccartyi [JPRE]
138928
138854
-
Met
CAT
[ENA]
¡û
>W09105044
AAOM01000003
Chloroflexota
Dehalococcoides mccartyi BAV1 [AAOM]
48353
48427
+
Met
CAT
[ENA]
¡û
>C141007765
CP006730
Chloroflexota
Dehalococcoides mccartyi GY50 [CP006730]
1067893
1067967
+
Met
CAT
[Ensembl]
¡û
>W1810107544
PHFC01000033
Chloroflexota
Dehalococcoides mccartyi KKB3.003 [PHFC]
928
1002
+
Met
CAT
[ENA]
¡û
>W1810266165
PQVQ01000004
Chloroflexota
Dehalococcoides mccartyi GEO12 [PQVQ]
228497
228571
+
Met
CAT
[ENA]
¡û
>W1810603283
QGLC01000011
Chloroflexota
Dehalococcoides mccartyi RC [QGLC]
125797
125871
+
Met
CAT
[ENA]
¡û
>W1810603323
QGLD01000011
Chloroflexota
Dehalococcoides mccartyi KS [QGLD]
129015
129089
+
Met
CAT
[ENA]
¡û
>C151003208
AP014722
Chloroflexota
Dehalococcoides sp. UCH007 [AP014722]
1051994
1052068
+
Met
CAT
[Ensembl]
¡û
>C151015126
CP006949
Chloroflexota
Dehalococcoides mccartyi CG1 [CP006949]
1110174
1110248
+
Met
CAT
[Ensembl]
¡û
>C151015172
CP006950
Chloroflexota
Dehalococcoides mccartyi CG4 [CP006950]
1113384
1113458
+
Met
CAT
[Ensembl]
¡û
>C151015218
CP006951
Chloroflexota
Dehalococcoides mccartyi CG5 [CP006951]
1020047
1020121
+
Met
CAT
[Ensembl]
¡û
>W10109951
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
117686
117760
+
Met
CAT
[ENA]
¡û
>C10105209
CP001924
Chloroflexota
Dehalococcoides mccartyi [CP001924]
1003470
1003544
+
Met
CAT
[Ensembl]
¡û
>C10105255
CP001827
Chloroflexota
Dehalococcoides mccartyi VS [CP001827]
1019955
1020029
+
Met
CAT
[Ensembl]
¡û
>W11112388
ADBO01000002
Chloroflexi
Dehalococcoides sp. GT [ADBO] GT [ADBO]
117686
117760
+
Met
CAT
[ENA]
¡û
>C161000330
AP014563
Chloroflexota
Dehalococcoides mccartyi IBARAKI [AP014563]
1072927
1073001
+
Met
CAT
-
¡û
>C161031501
CP011127
Chloroflexota
Dehalococcoides mccartyi 11a5 [CP011127]
1054064
1054138
+
Met
CAT
[Ensembl]
¡û
>C131012540
CP004079
Chloroflexota
Dehalococcoides mccartyi DCMB5 [CP004079]
1119138
1119212
+
Met
CAT
[Ensembl]
¡û
>C131012586
CP004080
Chloroflexota
Dehalococcoides mccartyi BTF08 [CP004080]
1103335
1103409
+
Met
CAT
[Ensembl]
¡û
>W1610520981
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
324578
324652
+
Met
CAT
[ENA]
¡û
>W1610521031
JGYD01000018
Chloroflexota
Dehalococcoides mccartyi [JGYD]
144948
144874
-
Met
CAT
[ENA]
¡û
>W1610541319
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1003867
1003941
+
Met
CAT
[ENA]
¡û
>W1611032005
LZFJ01000001
Chloroflexota
Dehalococcoides mccartyi [LZFJ]
71546
71472
-
Met
CAT
[ENA]
¡û
>W1611032056
LZFK01000016
Chloroflexota
Dehalococcoides mccartyi [LZFK]
226755
226829
+
Met
CAT
[ENA]
¡û
>W1710617231
JGVX01000003
Chloroflexota
Dehalococcoides mccartyi [JGVX]
324578
324652
+
Met
CAT
[ENA]
¡û
>W1710617281
JGYD01000018
Chloroflexota
Dehalococcoides mccartyi [JGYD]
144948
144874
-
Met
CAT
[ENA]
¡û
>W1710644450
JSWM01000007
Chloroflexota
Dehalococcoides mccartyi [JSWM]
1003867
1003941
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK