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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653814 (19 seq.)
>W131109434
APHV01000095
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
51716
51790
+
Val
TAC
[ENA]
¡û
>WENV170003232
AGTN01267107
[AGTN] bioreactor metagenome; poplar biomass
399
325
-
Val
TAC
[ENA]
¢þ
>C181063172
CP022364
Alphaproteobacteria
Azospirillum sp. TSH58 [CP022364]
520538
520464
-
Val
TAC
-
¡û
>W141520263
JGVN01000001
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
2035607
2035533
-
Val
TAC
[ENA]
¡û
>C191087895
CP032321
Alphaproteobacteria
Azospirillum argentinense MTCC4035 [CP032321]
222920
222994
+
Val
TAC
-
¡û
>C191088017
CP032339
Alphaproteobacteria
Azospirillum brasilense MTCC4038 [CP032339]
52363
52437
+
Val
TAC
-
¡û
>W1910613063
LGQV01000092
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
75281
75207
-
Val
TAC
[ENA]
¡û
>W1910613385
LGRK01000013
Alphaproteobacteria
Azospirillum sp. Sp 7 [LGRK]
10471
10545
+
Val
TAC
[ENA]
¡û
>W1911138116
NOWT01000029
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
74807
74733
-
Val
TAC
[ENA]
¡û
>W1911768749
QXHE01000003
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
151642
151568
-
Val
TAC
[ENA]
¡û
>W1810222257
POQV01000007
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
171227
171153
-
Val
TAC
[ENA]
¡û
>W1810223546
POTD01000008
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
171227
171153
-
Val
TAC
[ENA]
¡û
>W1810226109
POWG01000023
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
36207
36281
+
Val
TAC
[ENA]
¡û
>W1810692575
QLKQ01000021
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
3085
3011
-
Val
TAC
[ENA]
¡û
>C151034768
CP007793
Alphaproteobacteria
Azospirillum argentinense Az39 [CP007793]
1724117
1724043
-
Val
TAC
[Ensembl]
¡û
>C121017702
HE577327
Alphaproteobacteria
Azospirillum baldaniorum Sp245 [HE577327]
1512123
1512197
+
Val
TAC
[Ensembl]
¡û
>C161047361
CP012914
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP012914]
1336989
1337063
+
Val
TAC
[Ensembl]
¡û
>W1710626665
JPIR01000005
Alphaproteobacteria
Azospirillum brasilense [JPIR]
170951
170877
-
Val
TAC
[ENA]
¡û
>W1710626787
JPIS01000092
Alphaproteobacteria
Azospirillum brasilense [JPIS]
18416
18490
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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