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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.653817 (42 seq.)
>W131109441
APHV01000115
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
55246
55320
+
Val
CAC
[ENA]
¡û
>W131109442
APHV01000115
Alphaproteobacteria
Azospirillum brasilense FP2 [APHV]
55453
55527
+
Val
CAC
[ENA]
¡û
>WENV180034110
FTKM01680085
[FTKM] metagenome; soil
162895
162967
+
Val
CAC
[ENA]
¢þ
>WENV183727359
PJTO01033798
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
282
356
+
Val
CAC
[ENA]
¢þ
>C181063150
CP022364
Alphaproteobacteria
Azospirillum sp. TSH58 [CP022364]
2866162
2866236
+
Val
CAC
-
¡û
>C181063151
CP022364
Alphaproteobacteria
Azospirillum sp. TSH58 [CP022364]
2866369
2866443
+
Val
CAC
-
¡û
>W141520249
JGVN01000001
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
1475982
1476056
+
Val
CAC
[ENA]
¡û
>W141520250
JGVN01000001
Alphaproteobacteria
Azospirillum argentinense brasilense [JGVN]
1476189
1476263
+
Val
CAC
[ENA]
¡û
>C191087931
CP032321
Alphaproteobacteria
Azospirillum argentinense MTCC4035 [CP032321]
738280
738206
-
Val
CAC
-
¡û
>C191087932
CP032321
Alphaproteobacteria
Azospirillum argentinense MTCC4035 [CP032321]
738073
737999
-
Val
CAC
-
¡û
>C191088051
CP032339
Alphaproteobacteria
Azospirillum brasilense MTCC4038 [CP032339]
584315
584241
-
Val
CAC
-
¡û
>C191088052
CP032339
Alphaproteobacteria
Azospirillum brasilense MTCC4038 [CP032339]
584108
584034
-
Val
CAC
-
¡û
>C191088097
CP032345
Alphaproteobacteria
Azospirillum brasilense MTCC4039 [CP032345]
396177
396103
-
Val
CAC
-
¡û
>C191088098
CP032345
Alphaproteobacteria
Azospirillum brasilense MTCC4039 [CP032345]
395970
395896
-
Val
CAC
-
¡û
>W1910613029
LGQV01000014
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
80013
79939
-
Val
CAC
[ENA]
¡û
>W1910613041
LGQV01000034
Alphaproteobacteria
Azospirillum sp. TSH58 [LGQV]
149213
149287
+
Val
CAC
[ENA]
¡û
>W1910613304
LGQZ01000146
Alphaproteobacteria
Azospirillum sp. TSO22-1 [LGQZ]
718
644
-
Val
CAC
[ENA]
¡û
>W1911138078
NOWT01000003
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
282333
282259
-
Val
CAC
[ENA]
¡û
>W1911138079
NOWT01000003
Alphaproteobacteria
Azospirillum brasilense 2A1 [NOWT]
282126
282052
-
Val
CAC
[ENA]
¡û
>W1911497393
OCNJ01000006
Alphaproteobacteria
Caenispirillum bisanense USBA 140 [OCNJ]
142518
142592
+
Val
CAC
[ENA]
¡û
>W1911768774
QXHE01000035
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
19271
19197
-
Val
CAC
[ENA]
¡û
>W1911768775
QXHE01000035
Alphaproteobacteria
Azospirillum brasilense SR80 [QXHE]
19064
18990
-
Val
CAC
[ENA]
¡û
>W1810222276
POQV01000015
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
32268
32194
-
Val
CAC
[ENA]
¡û
>W1810222277
POQV01000015
Alphaproteobacteria
Azospirillum brasilense Ab-V5 [POQV]
32061
31987
-
Val
CAC
[ENA]
¡û
>W1810223561
POTD01000016
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
32268
32194
-
Val
CAC
[ENA]
¡û
>W1810223562
POTD01000016
Alphaproteobacteria
Azospirillum brasilense Ab-V6 [POTD]
32061
31987
-
Val
CAC
[ENA]
¡û
>W1810226064
POWG01000001
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
180260
180334
+
Val
CAC
[ENA]
¡û
>W1810226065
POWG01000001
Alphaproteobacteria
Azospirillum argentinense REC3 [POWG]
180467
180541
+
Val
CAC
[ENA]
¡û
>W1810692547
QLKQ01000002
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
133064
132990
-
Val
CAC
[ENA]
¡û
>W1810692548
QLKQ01000002
Alphaproteobacteria
Azospirillum brasilense HAMBI_3172 [QLKQ]
132858
132784
-
Val
CAC
[ENA]
¡û
>C151034750
CP007793
Alphaproteobacteria
Azospirillum argentinense Az39 [CP007793]
1165208
1165282
+
Val
CAC
[Ensembl]
¡û
>C151034751
CP007793
Alphaproteobacteria
Azospirillum argentinense Az39 [CP007793]
1165415
1165489
+
Val
CAC
[Ensembl]
¡û
>C121017707
HE577327
Alphaproteobacteria
Azospirillum baldaniorum Sp245 [HE577327]
2033754
2033828
+
Val
CAC
[Ensembl]
¡û
>C121017708
HE577327
Alphaproteobacteria
Azospirillum baldaniorum Sp245 [HE577327]
2033961
2034035
+
Val
CAC
[Ensembl]
¡û
>C161047384
CP012914
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP012914]
1868952
1868878
-
Val
CAC
[Ensembl]
¡û
>C161047385
CP012914
Alphaproteobacteria
Azospirillum brasilense Sp 7 [CP012914]
1868745
1868671
-
Val
CAC
[Ensembl]
¡û
>W1610026869
AVFK01000002
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
136227
136153
-
Val
CAC
[ENA]
¡û
>W1710023034
AVFK01000002
Alphaproteobacteria
Skermanella aerolata KACC 11604 [AVFK]
136227
136153
-
Val
CAC
[ENA]
¡û
>W1710626675
JPIR01000017
Alphaproteobacteria
Azospirillum brasilense [JPIR]
137137
137063
-
Val
CAC
[ENA]
¡û
>W1710626676
JPIR01000017
Alphaproteobacteria
Azospirillum brasilense [JPIR]
136930
136856
-
Val
CAC
[ENA]
¡û
>W1710626736
JPIS01000013
Alphaproteobacteria
Azospirillum brasilense [JPIS]
137252
137178
-
Val
CAC
[ENA]
¡û
>W1710626737
JPIS01000013
Alphaproteobacteria
Azospirillum brasilense [JPIS]
137045
136971
-
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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