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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654017 (65 seq.)
>W1710870858
LMKV01000033
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
133297
133371
+
Thr
TGT
[ENA]
¡û
>W1710872825
LMMH01000023
Alphaproteobacteria
Sphingomonas sp. Leaf257 [LMMH]
107872
107946
+
Thr
TGT
[ENA]
¡û
>W1711135153
LUYP01000036
Alphaproteobacteria
Rhizobiales bacterium Alpha_03 [LUYP]
1071
1145
+
Thr
TGT
[ENA]
¡û
>W1711386988
MEGC01000010
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
163599
163673
+
Thr
TGT
[ENA]
¡û
>W1711505617
MKVS01000004
Alphaproteobacteria
Novosphingobium sp. 63-713 [MKVS]
1911
1837
-
Thr
TGT
[ENA]
¡û
>W1711662293
MQUI01000009
Alphaproteobacteria
Sphingomonas sp. Sph1(2015) [MQUI]
74417
74343
-
Thr
TGT
[ENA]
¡û
>W1712084221
NHRH01000072
Alphaproteobacteria
Sphingomonas sp. CDS-1 [NHRH]
4628
4702
+
Thr
TGT
[ENA]
¡û
>C171019697
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
1507223
1507297
+
Thr
TGT
-
¡û
>W131058827
ANFY01000007
Alphaproteobacteria
Sandarakinorhabdus sp. AAP62 [ANFY]
51138
51212
+
Thr
TGT
[ENA]
¡û
>w015389
AAPC01000001
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [AAPC]
375255
375184
-
Thr
TGT
[ENA]
¡û
>WENV180020445
FTCZ01003996
[FTCZ] metagenome; soil
26
100
+
Thr
TGT
[ENA]
¢þ
>WENV180020452
FTCZ01004141
[FTCZ] metagenome; soil
26
99
+
Thr
TGT
[ENA]
¢þ
>WENV180020604
FTCZ01007137
[FTCZ] metagenome; soil
6283
6357
+
Thr
TGT
[ENA]
¢þ
>WENV180026261
FTIT01000204
[FTIT] metagenome; soil
9773
9847
+
Thr
TGT
[ENA]
¢þ
>WENV180081475
MPMC02119762
[MPMC] marine metagenome; 100 m water sample filtered on 30 um supor filter
13330
13256
-
Thr
TGT
[ENA]
¢þ
>WENV180084303
MPMD02172347
[MPMD] marine metagenome; 120 m water sample filtered on 30 um supor filter
143
217
+
Thr
TGT
[ENA]
¢þ
>WENV180089708
MPMF02098277
[MPMF] marine metagenome; 120 m water sample prefiltered with 30 um filter, filtered on to 0.2 um supor filter
2251
2177
-
Thr
TGT
[ENA]
¢þ
>W141078478
ATIB01000086
Alphaproteobacteria
Sphingobium baderi LL03 [ATIB]
139494
139420
-
Thr
TGT
[ENA]
¡û
>WENV181308089
OFIS01000200
[OFIS] sludge metagenome; sludge
56496
56422
-
Thr
TGT
[ENA]
¢þ
>WENV181311647
OFJB01006730
[OFJB] sludge metagenome; sludge
1694
1768
+
Thr
TGT
[ENA]
¢þ
>WENV181401558
OFTX01000926
[OFTX] sludge metagenome; sludge
1694
1768
+
Thr
TGT
[ENA]
¢þ
>W141191363
AYOY01000198
Alphaproteobacteria
Sphingobium sp. C100 [AYOY]
40023
40097
+
Thr
TGT
[ENA]
¡û
>C08011465
CP000781
Alphaproteobacteria
Xanthobacter autotrophicus Py2 [CP000781]
3732448
3732377
-
Thr
TGT
[Ensembl]
¡û
>W141223062
BACX01000830
Alphaproteobacteria
Sphingomonas-like bacterium B12 [BACX]
16783
16709
-
Thr
TGT
[ENA]
¡û
>W141237829
BBJS01000014
Alphaproteobacteria
Sphingomonas paucimobilis NBRC 13935 [BBJS]
114399
114325
-
Thr
TGT
[ENA]
¡û
>WENV183793443
PVBE010013311
[PVBE] marine metagenome; water
204540
204614
+
Thr
TGT
[ENA]
¢þ
>WENV170002989
AGTN01186193
[AGTN] bioreactor metagenome; poplar biomass
150
224
+
Thr
TGT
[ENA]
¢þ
>WENV170011482
APMI01068369
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
8
82
+
Thr
TGT
[ENA]
¢þ
>WENV170012322
APMI01153793
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
278
352
+
Thr
TGT
[ENA]
¢þ
>W141400530
JDRU02000153
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
3258
3332
+
Thr
TGT
[ENA]
¡û
>W141462293
JFHR01000012
Alphaproteobacteria
Sphingobium chlorophenolicum [JFHR]
73528
73454
-
Thr
TGT
[ENA]
¡û
>C181003268
AP017655
Alphaproteobacteria
Sphingobium cloacae JCM 10874 [AP017655]
924232
924158
-
Thr
TGT
-
¡û
>C191146367
CP035765
Alphaproteobacteria
Sphingomonas paucimobilis AIMST S2 [CP035765]
729105
729032
-
Thr
TGT
-
¡û
>C191189146
CP041243
Alphaproteobacteria
Brevundimonas sp. M20 [CP041243]
1245631
1245557
-
Thr
TGT
-
¡û
>W1910889695
NETV01000001
Alphaproteobacteria
Sphingobium sp. LB126 [NETV]
149778
149852
+
Thr
TGT
[ENA]
¡û
>W1911688337
QLJL01000002
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt1_0416 [QLJL]
12864
12937
+
Thr
TGT
[ENA]
¡û
>W1810720691
QNRK01000047
Alphaproteobacteria
Roseiarcus fermentans DSM 24875 [QNRK]
4122
4196
+
Thr
TGT
[ENA]
¡û
>W1810724704
QOBC01000002
Alphaproteobacteria
Sphingomonas paucimobilis AIMST S2 [QOBC]
199090
199017
-
Thr
TGT
[ENA]
¡û
>W10126786
AEDK01000005
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
149449
149523
+
Thr
TGT
[ENA]
¡û
>W1510757066
JACV01000012
Alphaproteobacteria
Sphingobium baderi LL03 [JACV]
86218
86292
+
Thr
TGT
[ENA]
¡û
>C11119811
CP002798
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [CP002798, CP002799]
429492
429418
-
Thr
TGT
[Ensembl]
¡û
>W11134047
AEDK01000005
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
149449
149523
+
Thr
TGT
[ENA]
¡û
>W1511592095
LBIC01000003
Alphaproteobacteria
Sphingobium chungbukense DJ77 [LBIC]
439704
439778
+
Thr
TGT
[ENA]
¡û
>W1511640349
LDUA01000010
Alphaproteobacteria
Sphingomonas paucimobilis LCT-SP1 [LDUA]
130266
130192
-
Thr
TGT
[ENA]
¡û
>W11161347
AFGG01000001
Alphaproteobacteria
Sphingomonas sp. S17 [AFGG]
341532
341606
+
Thr
TGT
[ENA]
¡û
>C161003379
CP005083
Alphaproteobacteria
Sphingobium sp. TKS [CP005083, CP005084]
1918942
1918868
-
Thr
TGT
[Ensembl]
¡û
>C161054548
CP013264
Alphaproteobacteria
Sphingobium baderi DE-13 [CP013264]
2934440
2934366
-
Thr
TGT
[Ensembl]
¡û
>W1610071276
BCTY01000005
Alphaproteobacteria
Sphingomonas sanguinis NBRC 13937 [BCTY]
14961
15035
+
Thr
TGT
[ENA]
¡û
>W1610071958
BCUM01000002
Alphaproteobacteria
Sphingobium cloacae NBRC 102517 [BCUM]
104140
104066
-
Thr
TGT
[ENA]
¡û
>W1610076901
BCZC01000090
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
12439
12365
-
Thr
TGT
[ENA]
¡û
>W121071130
AJXQ01000060
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
17119
17045
-
Thr
TGT
[ENA]
¡û
>W1610592888
LDTC01000025
Alphaproteobacteria
Sphingomonas sanguinis [LDTC]
31404
31478
+
Thr
TGT
[ENA]
¡û
>W1610592935
LDTD01000020
Alphaproteobacteria
Sphingomonas sanguinis [LDTD]
96586
96660
+
Thr
TGT
[ENA]
¡û
>W1610592972
LDTE01000001
Alphaproteobacteria
Sphingomonas sanguinis [LDTE]
118266
118340
+
Thr
TGT
[ENA]
¡û
>W1610593041
LDTF01000051
Alphaproteobacteria
Sphingomonas yabuuchiae [LDTF]
19621
19547
-
Thr
TGT
[ENA]
¡û
>W1610733204
LMKV01000033
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
133297
133371
+
Thr
TGT
[ENA]
¡û
>W1610735171
LMMH01000023
Alphaproteobacteria
Sphingomonas sp. Leaf257 [LMMH]
107872
107946
+
Thr
TGT
[ENA]
¡û
>W1610946273
LUYP01000036
Alphaproteobacteria
Rhizobiales bacterium Alpha_03 [LUYP]
1071
1145
+
Thr
TGT
[ENA]
¡û
>W1710068641
BCTY01000005
Alphaproteobacteria
Sphingomonas sanguinis NBRC 13937 [BCTY]
14961
15035
+
Thr
TGT
[ENA]
¡û
>W1710069160
BCUM01000002
Alphaproteobacteria
Sphingobium cloacae NBRC 102517 [BCUM]
104140
104066
-
Thr
TGT
[ENA]
¡û
>W1710074590
BCZC01000090
Alphaproteobacteria
Sphingobium chlorophenolicum NBRC 16172 [BCZC]
12439
12365
-
Thr
TGT
[ENA]
¡û
>W1710712168
LDTC01000025
Alphaproteobacteria
Sphingomonas sanguinis [LDTC]
31404
31478
+
Thr
TGT
[ENA]
¡û
>W1710712215
LDTD01000020
Alphaproteobacteria
Sphingomonas sanguinis [LDTD]
96586
96660
+
Thr
TGT
[ENA]
¡û
>W1710712252
LDTE01000001
Alphaproteobacteria
Sphingomonas sanguinis [LDTE]
118266
118340
+
Thr
TGT
[ENA]
¡û
>W1710712321
LDTF01000051
Alphaproteobacteria
Sphingomonas yabuuchiae [LDTF]
19621
19547
-
Thr
TGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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