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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65417 (22 seq.)
>W1711621542
MPDF01000028
Gammaproteobacteria
Gammaproteobacteria bacterium MedPE [MPDF]
6772
6686
-
Leu
GAG
[ENA]
¡û
>W1711624455
MPHJ01000006
Gammaproteobacteria
Shewanella sp. UCD-KL12 [MPHJ]
195952
195866
-
Leu
GAG
[ENA]
¡û
>C171033392
CP014782
Gammaproteobacteria
Shewanella psychrophila WP2 [CP014782]
4838772
4838686
-
Leu
GAG
-
¡û
>w021135
AAVJ01000068
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [AAVJ]
784
872
+
Leu
GAG
[ENA]
¡û
>w019941
AAUO01000001
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [AAUO]
93983
94071
+
Leu
GAG
[ENA]
¡û
>W08005701
ABIC01000060
Gammaproteobacteria
Shewanella benthica KT99 [ABIC]
16186
16103
-
Leu
GAG
[ENA]
¡û
>C08010586
CP000821
Gammaproteobacteria
Shewanella sediminis HAW-EB3 [CP000821]
4134845
4134762
-
Leu
GAG
[Ensembl]
¡û
>C08010202
CP000851
Gammaproteobacteria
Shewanella pealeana ATCC 700345 [CP000851]
3758249
3758166
-
Leu
GAG
[Ensembl]
¡û
>WENV182545096
OJBM01000068
[OJBM] seawater metagenome; Sea water
4652
4566
-
Leu
GAG
[ENA]
¢þ
>C08009892
CP000931
Gammaproteobacteria
Shewanella halifaxensis HAW-EB4 [CP000931]
3846492
3846409
-
Leu
GAG
[Ensembl]
¡û
>C08010784
CP000961
Gammaproteobacteria
Shewanella woodyi ATCC 51908 [CP000961]
4352001
4351918
-
Leu
GAG
[Ensembl]
¡û
>WENV183058297
OLHP01002986
[OLHP] seawater metagenome; Sea water
1261
1347
+
Leu
GAG
[ENA]
¢þ
>WENV183058302
OLHP01004237
[OLHP] seawater metagenome; Sea water
1112
1198
+
Leu
GAG
[ENA]
¢þ
>C181214206
LS483452
Gammaproteobacteria
Shewanella benthica DB21MT-2 [LS483452]
3789748
3789662
-
Leu
GAG
-
¡û
>C09109790
CP000472
Gammaproteobacteria
Shewanella piezotolerans WP3 [CP000472]
1221613
1221699
+
Leu
GAG
[Ensembl]
¡û
>W1810155908
PJAZ01000049
Gammaproteobacteria
Shewanella sp. Bg11-22 [PJAZ]
118560
118646
+
Leu
GAG
[ENA]
¡û
>W1810156225
PJBE01000013
Gammaproteobacteria
Shewanella sp. Choline-02u-19 [PJBE]
118560
118646
+
Leu
GAG
[ENA]
¡û
>W1810156694
PJBL01000016
Gammaproteobacteria
Shewanella sp. GutCb [PJBL]
110459
110373
-
Leu
GAG
[ENA]
¡û
>W1810156811
PJBM01000265
Gammaproteobacteria
Shewanella sp. GutDb-MelDb [PJBM]
43301
43215
-
Leu
GAG
[ENA]
¡û
>C10112884
AP011177
Gammaproteobacteria
Shewanella violacea DSS12 [AP011177]
3734978
3734892
-
Leu
GAG
[Ensembl]
¡û
>W1610460589
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
266645
266559
-
Leu
GAG
[ENA]
¡û
>W1710460153
FKJK01000004
Gammaproteobacteria
Shewanella woodyi Alg231_23 [FKJK]
266645
266559
-
Leu
GAG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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