This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.65453 (39 seq.)
>W1710869658
LMJX01000001
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
145954
146041
+
Ser
GGA
[ENA]
¡û
>W1710875043
LMOB01000003
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
381905
381818
-
Ser
GGA
[ENA]
¡û
>W1711461515
MJGW01000001
Actinomycetota
Plantibacter sp. MMLR14_011 [MJGW]
381730
381643
-
Ser
GGA
[ENA]
¡û
>W1711505804
MKVV01000108
Actinomycetota
Pseudonocardia sp. 73-21 [MKVV]
4291
4206
-
Ser
GGA
[ENA]
¡û
>W1712056190
NFZP01000130
Actinomycetota
Cellulomonas iranensis [NFZP]
4300
4385
+
Ser
GGA
[ENA]
¡û
>WENV180356361
OBNK01018166
[OBNK] sediment metagenome; sediment
187
274
+
Ser
GGA
[ENA]
¢þ
>WENV181370796
OFQT01011656
[OFQT] freshwater metagenome; Freshwater Lake
301
214
-
Ser
GGA
[ENA]
¢þ
>W141188419
AYMR01000021
Actinomycetota
Leifsonia aquatica H1aii [AYMR]
22801
22888
+
Ser
GGA
[ENA]
¡û
>C181002066
AP017457
Actinomycetota
Aurantimicrobium minutum KNC [AP017457]
44040
43953
-
Ser
GGA
-
¡û
>C181143739
CP026923
Actinomycetota
Pontimonas salivibrio CL-TW6 [CP026923]
1717342
1717429
+
Ser
GGA
-
¡û
>C181143958
CP026949
Actinomycetota
Mycetocola zhujimingii 449 [CP026949]
538142
538055
-
Ser
GGA
-
¡û
>C181194464
CP030929
Actinomycetota
Aurantimicrobium sp. MWH-Uga1 [CP030929]
1359578
1359665
+
Ser
GGA
-
¡û
>C191182542
CP040750
Actinomycetota
Plantibacter sp. M259 [CP040750]
959778
959865
+
Ser
GGA
-
¡û
>C191183932
CP040899
Actinomycetota
Georgenia wutianyii Z294 [CP040899]
190478
190393
-
Ser
GGA
-
¡û
>W141727750
JNFL01000592
Actinomycetota
Georgenia sp. SUBG003 [JNFL]
1673
1758
+
Ser
GGA
[ENA]
¡û
>W141727755
JNFL01001015
Actinomycetota
Georgenia sp. SUBG003 [JNFL]
144
59
-
Ser
GGA
[ENA]
¡û
>W1910182911
BJNG01000061
Actinomycetota
Pseudonocardia hydrocarbonoxydans NBRC 14498 [BJNG]
6268
6353
+
Ser
GGA
[ENA]
¡û
>W1911671589
QGAE01000002
Actinomycetota
Plantibacter flavus CFBP13513 [QGAE]
925558
925645
+
Ser
GGA
[ENA]
¡û
>W1911765556
QXCY01000001
Actinomycetota
Promicromonospora thailandica SAI-039 [QXCY]
2926922
2926837
-
Ser
GGA
[ENA]
¡û
>W1911823592
QZVS01000055
Actinomycetota
Cryobacterium melibiosiphilum Hh39 [QZVS]
7542
7629
+
Ser
GGA
[ENA]
¡û
>W1810058044
PDJD01000001
Actinomycetota
Serinibacter salmoneus DSM 21801 [PDJD]
2626898
2626983
+
Ser
GGA
[ENA]
¡û
>W1810058102
PDJE01000001
Actinomycetota
Microbacterium agarici DSM 21798 [PDJE]
1505363
1505276
-
Ser
GGA
[ENA]
¡û
>W1810058270
PDJI01000004
Actinomycetota
Georgenia soli DSM 21838 [PDJI]
1650172
1650258
+
Ser
GGA
[ENA]
¡û
>W1810514195
QBUG01000004
Actinomycetota
Promicromonospora sp. AC04 [QBUG]
456732
456817
+
Ser
GGA
[ENA]
¡û
>W1810569045
QEFB01000003
Actinomycetota
Mycetocola zhujimingii 622 [QEFB]
55941
55854
-
Ser
GGA
[ENA]
¡û
>W1810573675
QEKX01000001
Actinomycetota
Promicromonospora sukumoe SAI-064 [QEKX]
5584173
5584258
+
Ser
GGA
[ENA]
¡û
>W1810702160
QMGE01000108
Actinomycetota
Cellulomonas sp. K38 [QMGE]
1810
1895
+
Ser
GGA
[ENA]
¡û
>C10103444
CP001964
Actinomycetota
Cellulomonas flavigena DSM 20109 [CP001964]
3485863
3485776
-
Ser
GGA
[Ensembl]
¡û
>W1610052373
BBHV01000449
Actinomycetota
Cellulomonas pakistanensis [BBHV]
578
493
-
Ser
GGA
[ENA]
¡û
>W1610068101
BCRB01000036
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
31979
31894
-
Ser
GGA
[ENA]
¡û
>W1610732004
LMJX01000001
Actinomycetota
Plantibacter sp. Leaf1 [LMJX]
145954
146041
+
Ser
GGA
[ENA]
¡û
>W1610737389
LMOB01000003
Actinomycetota
Plantibacter sp. Leaf314 [LMOB]
381905
381818
-
Ser
GGA
[ENA]
¡û
>W1710048751
BBHV01000449
Actinomycetota
Cellulomonas pakistanensis [BBHV]
578
493
-
Ser
GGA
[ENA]
¡û
>W1710065474
BCRB01000036
Actinomycetota
Cellulomonas iranensis NBRC 101100 = JCM 18110 [BCRB]
31979
31894
-
Ser
GGA
[ENA]
¡û
>W1710534567
FNRY01000001
Actinomycetota
Microbacterium humi [FNRY]
2024217
2024130
-
Ser
GGA
[ENA]
¡û
>W1710566718
FOSE01000001
Actinomycetota
Cellulomonas sp. KH9 [FOSE]
490359
490446
+
Ser
GGA
[ENA]
¡û
>W1710570892
FOVM01000001
Actinomycetota
Mycetocola miduiensis [FOVM]
213341
213428
+
Ser
GGA
[ENA]
¡û
>W1710603982
FUZO01000002
Actinomycetota
Plantibacter cousiniae [FUZO]
606388
606301
-
Ser
GGA
[ENA]
¡û
>W1710609366
FXWJ01000005
Actinomycetota
Plantibacter sp. VKM Ac-1784 elymi [FXWJ]
380938
380851
-
Ser
GGA
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK