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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654760 (57 seq.)
>W1710805241
LJZW01000005
Gammaproteobacteria
Xylella fastidiosa [LJZW]
72658
72584
-
Val
TAC
[ENA]
¡û
>W1710808060
LKDK01000002
Gammaproteobacteria
Xylella fastidiosa subsp. pauca [LKDK]
31027
30953
-
Val
TAC
[ENA]
¡û
>W1710863659
LMFH01000006
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
244053
244127
+
Val
TAC
[ENA]
¡û
>W1711055769
LRVE01000045
Gammaproteobacteria
Xylella fastidiosa [LRVE]
33034
32960
-
Val
TAC
[ENA]
¡û
>W1711055835
LRVF01000108
Gammaproteobacteria
Xylella fastidiosa [LRVF]
33028
32954
-
Val
TAC
[ENA]
¡û
>W1711055879
LRVG01000133
Gammaproteobacteria
Xylella fastidiosa [LRVG]
33494
33420
-
Val
TAC
[ENA]
¡û
>W1711055929
LRVH01000172
Gammaproteobacteria
Xylella fastidiosa [LRVH]
33208
33134
-
Val
TAC
[ENA]
¡û
>W1711055956
LRVI01000021
Gammaproteobacteria
Xylella fastidiosa [LRVI]
32658
32584
-
Val
TAC
[ENA]
¡û
>W1711056018
LRVJ01000146
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
23435
23361
-
Val
TAC
[ENA]
¡û
>W1711134772
LUYA01000004
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYA]
32183
32109
-
Val
TAC
[ENA]
¡û
>W1711134819
LUYB01000004
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYB]
32185
32111
-
Val
TAC
[ENA]
¡û
>W1711134878
LUYC01000005
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex [LUYC]
32396
32322
-
Val
TAC
[ENA]
¡û
>W131221312
AUAJ01000004
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ATCC 35871 [AUAJ]
32665
32591
-
Val
TAC
[ENA]
¡û
>W131244896
CAQP01000173
Gammaproteobacteria
Lysobacter antibioticus HS124 [CAQP]
10179
10253
+
Val
TAC
[ENA]
¡û
>W1711618079
MPAZ01000007
Gammaproteobacteria
Xylella fastidiosa [MPAZ]
32040
31966
-
Val
TAC
[ENA]
¡û
>C171002817
CP010051
Gammaproteobacteria
Xylella fastidiosa Fb7 [CP010051]
439162
439236
+
Val
TAC
-
¡û
>C171113970
CP020870
Gammaproteobacteria
Xylella fastidiosa subsp. pauca De Donno [CP020870]
1792443
1792369
-
Val
TAC
-
¡û
>C027151
AE003849
Gammaproteobacteria
Xylella fastidiosa 9a5c [AE003849]
1142842
1142916
+
Val
TAC
[Ensembl]
¡û
>w001708
AAAM03000132
Gammaproteobacteria
Xylella fastidiosa Ann-1 [AAAM]
3617
3691
+
Val
TAC
[ENA]
¡û
>w001627
AAAL02000014
Gammaproteobacteria
Xylella fastidiosa Dixon [AAAL]
32628
32702
+
Val
TAC
[ENA]
¡û
>W141096985
AVGA01000003
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex Griffin-1 [AVGA]
32107
32033
-
Val
TAC
[ENA]
¡û
>W141148604
AWYH01000031
Gammaproteobacteria
Xylella fastidiosa 32 [AWYH]
33486
33412
-
Val
TAC
[ENA]
¡û
>W141152291
AXBS01000031
Gammaproteobacteria
Xylella fastidiosa 6c [AXBS]
33345
33271
-
Val
TAC
[ENA]
¡û
>C08011538
CP000941
Gammaproteobacteria
Xylella fastidiosa M12 [CP000941]
580968
581042
+
Val
TAC
[Ensembl]
¡û
>W141401121
JDSQ01000007
Gammaproteobacteria
Xylella taiwanensis PLS229 [JDSQ]
116213
116287
+
Val
TAC
[ENA]
¡û
>C181007944
CP009790
Gammaproteobacteria
Xylella fastidiosa U24D [CP009790]
1142842
1142916
+
Val
TAC
-
¡û
>C181008019
CP009823
Gammaproteobacteria
Xylella fastidiosa J1a12 [CP009823]
1245536
1245462
-
Val
TAC
-
¡û
>C181008064
CP009826
Gammaproteobacteria
Xylella fastidiosa Pr8x [CP009826]
1885001
1884927
-
Val
TAC
-
¡û
>C181008112
CP009829
Gammaproteobacteria
Xylella fastidiosa 3124 [CP009829]
1906415
1906341
-
Val
TAC
-
¡û
>C181008161
CP009885
Gammaproteobacteria
Xylella fastidiosa Hib4 [CP009885]
2053634
2053560
-
Val
TAC
-
¡û
>C181011021
CP011800
Gammaproteobacteria
Xylella taiwanensis PLS235 [CP011800]
718964
719038
+
Val
TAC
-
¡û
>C181020218
CP016608
Gammaproteobacteria
Xylella fastidiosa Salento-1 [CP016608]
1792297
1792223
-
Val
TAC
-
¡û
>C181020267
CP016610
Gammaproteobacteria
Xylella fastidiosa Salento-2 [CP016610]
1792460
1792386
-
Val
TAC
-
¡û
>C181021701
CP016836
Gammaproteobacteria
Xanthomonas citri pv. mangiferaeindicae XC01 [CP016836]
3009625
3009551
-
Val
TAC
-
¡û
>W141699102
JMHP01000005
Gammaproteobacteria
Xylella fastidiosa [JMHP]
32115
32041
-
Val
TAC
[ENA]
¡û
>W1911582135
PHFS01000004
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex CFBP8078 [PHFS]
95936
96010
+
Val
TAC
[ENA]
¡û
>W1911582275
PHFV01000005
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi CFBP8356 [PHFV]
102462
102536
+
Val
TAC
[ENA]
¡û
>W1911710194
QPQV01000127
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex ESVL [QPQV]
32223
32149
-
Val
TAC
[ENA]
¡û
>W1911710244
QPQW01000137
Gammaproteobacteria
Xylella fastidiosa subsp. multiplex IVIA5901 [QPQW]
32223
32149
-
Val
TAC
[ENA]
¡û
>W1911770875
QXJI01000001
Gammaproteobacteria
Lysobacter tabacisoli C8-1 [QXJI]
247357
247431
+
Val
TAC
[ENA]
¡û
>C151010998
CP006696
Gammaproteobacteria
Xylella fastidiosa subsp. sandyi Ann-1 [CP006696]
771446
771520
+
Val
TAC
[Ensembl]
¡û
>W1511436648
JUJW01000003
Gammaproteobacteria
Xylella fastidiosa CoDiRO [JUJW]
172283
172357
+
Val
TAC
[ENA]
¡û
>W1610207433
FCOY01000007
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
381895
381821
-
Val
TAC
[ENA]
¡û
>W1610521514
JNBT01000010
Gammaproteobacteria
Xylella fastidiosa subsp. pauca 11399 [JNBT]
214977
215051
+
Val
TAC
[ENA]
¡û
>W1610669098
LJZW01000005
Gammaproteobacteria
Xylella fastidiosa [LJZW]
72658
72584
-
Val
TAC
[ENA]
¡û
>W1610672164
LKDK01000002
Gammaproteobacteria
Xylella fastidiosa subsp. pauca [LKDK]
31027
30953
-
Val
TAC
[ENA]
¡û
>W1610726005
LMFH01000006
Gammaproteobacteria
Lysobacter sp. Root494 [LMFH]
244053
244127
+
Val
TAC
[ENA]
¡û
>W1610896815
LRVE01000045
Gammaproteobacteria
Xylella fastidiosa [LRVE]
33034
32960
-
Val
TAC
[ENA]
¡û
>W1610896881
LRVF01000108
Gammaproteobacteria
Xylella fastidiosa [LRVF]
33028
32954
-
Val
TAC
[ENA]
¡û
>W1610896925
LRVG01000133
Gammaproteobacteria
Xylella fastidiosa [LRVG]
33494
33420
-
Val
TAC
[ENA]
¡û
>W1610896975
LRVH01000172
Gammaproteobacteria
Xylella fastidiosa [LRVH]
33208
33134
-
Val
TAC
[ENA]
¡û
>W1610897002
LRVI01000021
Gammaproteobacteria
Xylella fastidiosa [LRVI]
32658
32584
-
Val
TAC
[ENA]
¡û
>W1610897064
LRVJ01000146
Gammaproteobacteria
Xylella fastidiosa [LRVJ]
23435
23361
-
Val
TAC
[ENA]
¡û
>WENV079858
AATN01003869
Wastewater EBPR microbial communities from Bioreactor (Australian sludge)
915
991
+
Val
TAC
[ENA]
>W1710208067
FCOY01000007
Gammaproteobacteria
Xanthomonas massiliensis SN8 [FCOY]
381895
381821
-
Val
TAC
[ENA]
¡û
>W1710531707
FNPT01000001
Gammaproteobacteria
Lysobacter sp. yr284 [FNPT]
907942
907868
-
Val
TAC
[ENA]
¡û
>W1710620799
JNBT01000010
Gammaproteobacteria
Xylella fastidiosa subsp. pauca 11399 [JNBT]
214977
215051
+
Val
TAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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