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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654792 (76 seq.)
>W1710907329
LNOS01000021
Alphaproteobacteria
Sphingomonas sp. WG [LNOS]
92049
92123
+
Thr
GGT
[ENA]
¡û
>W1711082168
LSTR01000018
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
198329
198255
-
Thr
GGT
[ENA]
¡û
>W1711083862
LSVG01000037
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
560
486
-
Thr
GGT
[ENA]
¡û
>W1711146759
LVJD01000102
Alphaproteobacteria
Sphingobium yanoikuyae [LVJD]
37666
37740
+
Thr
GGT
[ENA]
¡û
>W1711227836
LXVY01000029
Alphaproteobacteria
Sphingomonas sp. TDK1 [LXVY]
71381
71307
-
Thr
GGT
[ENA]
¡û
>W1711386344
MEFF01000107
Alphaproteobacteria
Sphingobium sp. SCN 64-10 [MEFF]
8307
8381
+
Thr
GGT
[ENA]
¡û
>C171019708
CP013070
Alphaproteobacteria
Sphingobium indicum B90A [CP013070]
3568887
3568813
-
Thr
GGT
-
¡û
>C171108876
CP020538
Alphaproteobacteria
Sphingobium herbicidovorans MH [CP020538]
1990336
1990262
-
Thr
GGT
-
¡û
>W131003000
AGZU01000008
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
881215
881141
-
Thr
GGT
[ENA]
¡û
>W131052394
AMYX01000083
Alphaproteobacteria
alpha proteobacterium LLX12A [AMYX]
19741
19815
+
Thr
GGT
[ENA]
¡û
>W131196363
ASTG01000015
Alphaproteobacteria
Sphingobium bisphenolivorans YL23 [ASTG]
35898
35972
+
Thr
GGT
[ENA]
¡û
>W131224741
AUDA01000193
Alphaproteobacteria
Sphingobium indicum IP26 [AUDA]
30429
30503
+
Thr
GGT
[ENA]
¡û
>WENV180038590
LLBY010000395
[LLBY] soil metagenome; soil from tomato rhizosphere
2850
2924
+
Thr
GGT
[ENA]
¢þ
>WENV180041139
LLBZ010051270
[LLBZ] soil metagenome; soil from tomato rhizosphere
2238
2164
-
Thr
GGT
[ENA]
¢þ
>W141076292
ATDO01000109
Alphaproteobacteria
Sphingobium sp. HDIP04 [ATDO]
66767
66693
-
Thr
GGT
[ENA]
¡û
>W141078124
ATHO01000162
Alphaproteobacteria
Sphingobium quisquiliarum P25 [ATHO]
54693
54619
-
Thr
GGT
[ENA]
¡û
>WENV181172370
OEIV010635777
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
160
86
-
Thr
GGT
[ENA]
¢þ
>W141231030
BATN01000054
Alphaproteobacteria
Sphingobium fuliginis KK22 [BATN]
25442
25368
-
Thr
GGT
[ENA]
¡û
>W141285074
JANF02000037
Alphaproteobacteria
Sphingobium indicum F2 [JANF]
41638
41564
-
Thr
GGT
[ENA]
¡û
>WENV183729709
PJTR01000026
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
241906
241980
+
Thr
GGT
[ENA]
¢þ
>WENV183730422
PJTS01000012
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
1049
975
-
Thr
GGT
[ENA]
¢þ
>WENV183732778
PJTX01013098
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
801
727
-
Thr
GGT
[ENA]
¢þ
>WENV183732835
PJTX01020545
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
487
413
-
Thr
GGT
[ENA]
¢þ
>WENV183733677
PJTY01011017
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
1025
951
-
Thr
GGT
[ENA]
¢þ
>WENV183733709
PJTY01013703
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
832
758
-
Thr
GGT
[ENA]
¢þ
>WENV183734281
PJTZ01000971
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
5669
5595
-
Thr
GGT
[ENA]
¢þ
>WENV183737893
PJUD01045016
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
1025
951
-
Thr
GGT
[ENA]
¢þ
>WENV183737979
PJUD01060107
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
832
758
-
Thr
GGT
[ENA]
¢þ
>WENV183739469
PJUE01020902
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
388
462
+
Thr
GGT
[ENA]
¢þ
>W141400538
JDRU02000371
Alphaproteobacteria
Sphingomonas sp. BHC-A [JDRU]
1461
1535
+
Thr
GGT
[ENA]
¡û
>WENV170576622
FRDC01001123
[FRDC] freshwater metagenome; water
4761
4687
-
Thr
GGT
[ENA]
¢þ
>W141484904
JFYY01000026
Alphaproteobacteria
Sphingomonas paucimobilis [JFYY]
15442
15368
-
Thr
GGT
[ENA]
¡û
>W141484975
JFZA02000004
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [JFZA]
68916
68990
+
Thr
GGT
[ENA]
¡û
>C181047563
CP020925
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [CP020925]
292422
292496
+
Thr
GGT
-
¡û
>C181089690
CP023741
Alphaproteobacteria
Sphingobium yanoikuyae S72 [CP023741]
5063547
5063473
-
Thr
GGT
-
¡û
>W141520470
JGVR01000034
Alphaproteobacteria
Sphingobium yanoikuyae [JGVR]
50965
51039
+
Thr
GGT
[ENA]
¡û
>C191063640
CP029335
Alphaproteobacteria
Sphingobium sp. LF-16 [CP029335]
4179351
4179277
-
Thr
GGT
-
¡û
>C191103899
CP033230
Alphaproteobacteria
Sphingobium yanoikuyae SJTF8 [CP033230]
4214312
4214238
-
Thr
GGT
-
¡û
>C191163721
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
1165298
1165224
-
Thr
GGT
-
¡û
>C191185550
CP041016
Alphaproteobacteria
Sphingobium fuliginis ATCC 27551 [CP041016, CP041017]
3423500
3423426
-
Thr
GGT
-
¡û
>W141807738
JPOU01000008
Alphaproteobacteria
Sphingobium yanoikuyae [JPOU]
505
431
-
Thr
GGT
[ENA]
¡û
>W1911114852
NOIW01000174
Alphaproteobacteria
Sphingobium sp. IP1 [NOIW]
630
556
-
Thr
GGT
[ENA]
¡û
>W1911247258
NSLI01000003
Alphaproteobacteria
Sphingomonas lenta 1PNM-20 [NSLI]
815861
815787
-
Thr
GGT
[ENA]
¡û
>W1911495407
OBMU01000001
Alphaproteobacteria
Novosphingobium sp. Chol11 [OBMU]
2406230
2406304
+
Thr
GGT
[ENA]
¡û
>W1911688315
QLJK01000025
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
740
666
-
Thr
GGT
[ENA]
¡û
>W1911719173
QQWY01000017
Alphaproteobacteria
Sphingomonas sp. ABOLE ABOLE S-NIH.Pt18_1212 [QQWY]
108883
108809
-
Thr
GGT
[ENA]
¡û
>W1911719233
QQWZ01000047
Alphaproteobacteria
Sphingomonas sp. ABOLD ABOLD S-NIH.Pt20_1215 [QQWZ]
32670
32596
-
Thr
GGT
[ENA]
¡û
>W1911722427
QRAL01000007
Alphaproteobacteria
Sphingobium yanoikuyae SK-NIH.Env6_1116 [QRAL]
42122
42196
+
Thr
GGT
[ENA]
¡û
>W1810000484
BEWI01000032
Alphaproteobacteria
Sphingobium fuliginis OMI [BEWI]
1479545
1479619
+
Thr
GGT
[ENA]
¡û
>W1810576618
QENQ01000001
Alphaproteobacteria
Sphingomonas pokkalii L3B27 [QENQ]
1083055
1082981
-
Thr
GGT
[ENA]
¡û
>C151074583
CP010954
Alphaproteobacteria
Sphingobium sp. YBL2 [CP010954]
2310539
2310465
-
Thr
GGT
[Ensembl]
¡û
>W10126778
AEDK01000003
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
377072
376998
-
Thr
GGT
[ENA]
¡û
>C10111702
AP010803
Alphaproteobacteria
Sphingobium indicum UT26S [AP010803, AP010804]
157770
157696
-
Thr
GGT
[Ensembl]
¡û
>W1510941312
JFFT01000001
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [JFFT]
1213
1139
-
Thr
GGT
[ENA]
¡û
>C11119779
CP002798
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [CP002798, CP002799]
2109328
2109402
+
Thr
GGT
[Ensembl]
¡û
>W11134039
AEDK01000003
Alphaproteobacteria
Sphingobium chlorophenolicum L-1 [AEDK]
377072
376998
-
Thr
GGT
[ENA]
¡û
>W1511646456
LECE01000018
Alphaproteobacteria
Sphingomonas sp. MEA3-1 [LECE]
76385
76311
-
Thr
GGT
[ENA]
¡û
>W11176462
AFXE01000164
Alphaproteobacteria
Sphingobium yanoikuyae XLDN2-5 [AFXE]
84647
84573
-
Thr
GGT
[ENA]
¡û
>W11179064
AGFU01000026
Alphaproteobacteria
Sphingomonas elodea ATCC 31461 [AGFU]
106294
106368
+
Thr
GGT
[ENA]
¡û
>C161003434
CP005188
Alphaproteobacteria
Sphingobium sp. MI1205 [CP005188, CP005189]
260628
260554
-
Thr
GGT
[Ensembl]
¡û
>C161092731
CP015986
Alphaproteobacteria
Sphingobium sp. EP60837 [CP015986, CP015987]
1640572
1640498
-
Thr
GGT
[Ensembl]
¡û
>W1610076702
BCYY01000018
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
106816
106742
-
Thr
GGT
[ENA]
¡û
>W1610076955
BCZD01000021
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
74611
74685
+
Thr
GGT
[ENA]
¡û
>W121071131
AJXQ01000061
Alphaproteobacteria
Sphingobium indicum B90A [AJXQ]
4345
4419
+
Thr
GGT
[ENA]
¡û
>W121105811
ALBQ01000021
Alphaproteobacteria
Sphingomonas sp. ATCC 31555 [ALBQ]
137421
137347
-
Thr
GGT
[ENA]
¡û
>W1610609170
LFVX01000037
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
28786
28712
-
Thr
GGT
[ENA]
¡û
>W1610766343
LNOS01000021
Alphaproteobacteria
Sphingomonas sp. WG [LNOS]
92049
92123
+
Thr
GGT
[ENA]
¡û
>W1610920953
LSTR01000018
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
198329
198255
-
Thr
GGT
[ENA]
¡û
>W1610922615
LSVG01000037
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
560
486
-
Thr
GGT
[ENA]
¡û
>W1611011800
LXVY01000029
Alphaproteobacteria
Sphingomonas sp. TDK1 [LXVY]
71381
71307
-
Thr
GGT
[ENA]
¡û
>W1710068310
BCTR01000032
Alphaproteobacteria
Sphingomonas azotifigens NBRC 15497 [BCTR]
25227
25301
+
Thr
GGT
[ENA]
¡û
>W1710074391
BCYY01000018
Alphaproteobacteria
Sphingomonas pituitosa NBRC 102491 [BCYY]
106816
106742
-
Thr
GGT
[ENA]
¡û
>W1710074644
BCZD01000021
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
74611
74685
+
Thr
GGT
[ENA]
¡û
>W1710566260
FORV01000001
Alphaproteobacteria
Sphingomonas sp. NFR04 [FORV]
1198961
1199035
+
Thr
GGT
[ENA]
¡û
>W1710592149
FRCG01000002
Alphaproteobacteria
Sphingobium sp. YR657 [FRCG]
49087
49013
-
Thr
GGT
[ENA]
¡û
>W1710730457
LFVX01000037
Alphaproteobacteria
Sphingobium sp. Ndbn-10 [LFVX]
28786
28712
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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