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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654913 (83 seq.)
>W1710785378
LJHU01000091
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
13687
13761
+
Asn
GTT
[ENA]
¡û
>W1710861988
LMEB01000004
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
338237
338311
+
Asn
GTT
[ENA]
¡û
>W1710863867
LMFL01000030
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
9406
9332
-
Asn
GTT
[ENA]
¡û
>W1710863868
LMFL01000030
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
9254
9180
-
Asn
GTT
[ENA]
¡û
>W1710865546
LMGT01000004
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
219276
219202
-
Asn
GTT
[ENA]
¡û
>W1710877309
LMPZ01000002
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
1205094
1205020
-
Asn
GTT
[ENA]
¡û
>W1711386092
MEEW01000227
Alphaproteobacteria
Phenylobacterium sp. SCN 69-14 [MEEW]
4729
4803
+
Asn
GTT
[ENA]
¡û
>W1711407971
MGLI01000187
Alphaproteobacteria
Caulobacterales bacterium GWE1_67_11 [MGLI]
4984
5058
+
Asn
GTT
[ENA]
¡û
>W1711408001
MGLN01000076
Alphaproteobacteria
Caulobacterales bacterium RIFOXYB1_FULL_67_16 [MGLN]
8328
8254
-
Asn
GTT
[ENA]
¡û
>W1711501746
MKRY01000303
Alphaproteobacteria
Brevundimonas sp. 67-6 [MKRY]
2406
2480
+
Asn
GTT
[ENA]
¡û
>W1711718091
MTHE01000001
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
257427
257501
+
Asn
GTT
[ENA]
¡û
>W1712106176
NIVP01000004
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
166992
167066
+
Asn
GTT
[ENA]
¡û
>C171094855
CP019508
Alphaproteobacteria
Brevundimonas sp. LM2 [CP019508]
2147484
2147558
+
Asn
GTT
-
¡û
>W131218241
ATXN01000002
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
383920
383994
+
Asn
GTT
[ENA]
¡û
>W131221574
AUAO01000006
Alphaproteobacteria
Brevundimonas aveniformis DSM 17977 [AUAO]
105494
105568
+
Asn
GTT
[ENA]
¡û
>WENV180014111
FPIC01056710
[FPIC] soil metagenome; Soil
83
157
+
Asn
GTT
[ENA]
¢þ
>W141043031
AMFA01000151
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
6110
6036
-
Asn
GTT
[ENA]
¡û
>W08010831
ABRU01000040
Alphaproteobacteria
Brevundimonas sp. BAL3 [ABRU]
82138
82212
+
Asn
GTT
[ENA]
¡û
>WENV181169975
OEIV010017752
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
1194
1120
-
Asn
GTT
[ENA]
¢þ
>WENV181223087
OFDC01001828
[OFDC] hot springs metagenome; Water
5596
5522
-
Asn
GTT
[ENA]
¢þ
>WENV181227358
OFDN01008149
[OFDN] hot springs metagenome; Water
1824
1898
+
Asn
GTT
[ENA]
¢þ
>WENV181371045
OFQU01011450
[OFQU] wastewater metagenome; Exp Tend CN 90WW
281
207
-
Asn
GTT
[ENA]
¢þ
>WENV181378870
OFRC01001816
[OFRC] wastewater metagenome; Exp Tend CN 10WW
2753
2679
-
Asn
GTT
[ENA]
¢þ
>WENV181380424
OFRD01085987
[OFRD] wastewater metagenome; Exp Tend CN 100WW
164
238
+
Asn
GTT
[ENA]
¢þ
>WENV181382018
OFRF01049776
[OFRF] wastewater metagenome; Exp Tend CN 50WW
363
437
+
Asn
GTT
[ENA]
¢þ
>WENV181402206
OFTY01000236
[OFTY] sludge metagenome; sludge
55555
55629
+
Asn
GTT
[ENA]
¢þ
>W141230477
BATC01000058
Alphaproteobacteria
Brevundimonas abyssalis TAR-001 [BATC]
4496
4422
-
Asn
GTT
[ENA]
¡û
>WENV183727468
PJTP01000003
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
396099
396025
-
Asn
GTT
[ENA]
¢þ
>WENV183728548
PJTQ01000126
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
92503
92577
+
Asn
GTT
[ENA]
¢þ
>WENV183730869
PJTS01001571
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
1714
1788
+
Asn
GTT
[ENA]
¢þ
>WENV183733246
PJTY01000438
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
14160
14086
-
Asn
GTT
[ENA]
¢þ
>WENV183735563
PJUB01000047
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
86410
86336
-
Asn
GTT
[ENA]
¢þ
>WENV183739008
PJUE01000885
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
4773
4847
+
Asn
GTT
[ENA]
¢þ
>WENV183740171
PJUF01000583
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
12532
12606
+
Asn
GTT
[ENA]
¢þ
>WENV170003778
AGTN01447842
[AGTN] bioreactor metagenome; poplar biomass
424
498
+
Asn
GTT
[ENA]
¢þ
>WENV170010641
APMI01023371
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
985
911
-
Asn
GTT
[ENA]
¢þ
>WENV170192931
CEPG01033584
[CEPG] marine metagenome genome assembly TARA_046_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1502
1576
+
Asn
GTT
[ENA]
¢þ
>WENV170201130
CEPP01078642
[CEPP] marine metagenome genome assembly TARA_042_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
572
498
-
Asn
GTT
[ENA]
¢þ
>WENV170574422
FLYM01036230
[FLYM] hot springs metagenome; Sediment
5563
5637
+
Asn
GTT
[ENA]
¢þ
>WENV170645938
JQGF01001230
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
75
1
-
Asn
GTT
[ENA]
¢þ
>WENV170714306
LNFM01066617
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2139
2065
-
Asn
GTT
[ENA]
¢þ
>WENV170714391
LNFM01071087
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
73
1
-
Asn
GTT
[ENA]
¢þ
>WENV170715026
LNFM01126500
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
1101
1027
-
Asn
GTT
[ENA]
¢þ
>WENV170784061
MCHG01000005
[MCHG] permafrost metagenome; enrichment culture inoculated with soil; incubated with H2/CO2 at 20 degrees celsius and
129207
129281
+
Asn
GTT
[ENA]
¢þ
>WENV170842794
MDSZ01247729
[MDSZ] marine metagenome; seawater
7372
7446
+
Asn
GTT
[ENA]
¢þ
>C191094002
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
2697490
2697564
+
Asn
GTT
-
¡û
>C191134435
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
2623096
2623170
+
Asn
GTT
-
¡û
>C191157411
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
875352
875278
-
Asn
GTT
-
¡û
>C191159630
CP038440
Alphaproteobacteria
Brevundimonas sp. MF30-B [CP038440]
1767723
1767649
-
Asn
GTT
-
¡û
>C191220454
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
1404788
1404714
-
Asn
GTT
-
¡û
>W141551934
JHOF01000018
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
8289
8215
-
Asn
GTT
[ENA]
¡û
>W141712445
JMQR01000051
Alphaproteobacteria
Brevundimonas sp. EAKA [JMQR]
16194
16268
+
Asn
GTT
[ENA]
¡û
>W141731228
JNIX01000009
Alphaproteobacteria
Brevundimonas bacteroides DSM 4726 [JNIX]
313265
313339
+
Asn
GTT
[ENA]
¡û
>W1910182690
BJNC01000009
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
48887
48813
-
Asn
GTT
[ENA]
¡û
>W1910374334
FUIE01000049
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
40950
40876
-
Asn
GTT
[ENA]
¡û
>W1910725238
MGLJ01000599
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_67_30 [MGLJ]
100
26
-
Asn
GTT
[ENA]
¡û
>W1910725246
MGLK01000003
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_01_FULL_70_19 [MGLK]
263738
263664
-
Asn
GTT
[ENA]
¡û
>W1910725297
MGLL01000201
Alphaproteobacteria
Caulobacterales bacterium RIFCSPHIGHO2_12_FULL_68_13 [MGLL]
3225
3299
+
Asn
GTT
[ENA]
¡û
>W1911566733
PCPB01000001
Alphaproteobacteria
Brevundimonas sp. MYb52 [PCPB]
471198
471124
-
Asn
GTT
[ENA]
¡û
>W1911566942
PCPF01000001
Alphaproteobacteria
Brevundimonas sp. MYb46 [PCPF]
471198
471124
-
Asn
GTT
[ENA]
¡û
>W1911567181
PCPK01000001
Alphaproteobacteria
Brevundimonas sp. MYb33 [PCPK]
127430
127504
+
Asn
GTT
[ENA]
¡û
>W1911567273
PCPM01000003
Alphaproteobacteria
Brevundimonas sp. MYb31 [PCPM]
127443
127517
+
Asn
GTT
[ENA]
¡û
>W1911567385
PCPO01000006
Alphaproteobacteria
Brevundimonas sp. MYb27 [PCPO]
45008
45082
+
Asn
GTT
[ENA]
¡û
>W1911737852
QTTA01000016
Alphaproteobacteria
Brevundimonas halotolerans MCS24 [QTTA]
58064
58138
+
Asn
GTT
[ENA]
¡û
>W1911738151
QUOQ01000003
Alphaproteobacteria
Brevundimonas lutea NS26 [QUOQ]
341904
341830
-
Asn
GTT
[ENA]
¡û
>W1911760341
QWTZ01000002
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
151544
151470
-
Asn
GTT
[ENA]
¡û
>W1810000960
BEWU01000008
Alphaproteobacteria
Brevundimonas denitrificans TAR-002 [BEWU]
135490
135416
-
Asn
GTT
[ENA]
¡û
>SRA1002188
SRR001308.294589
Metagenomic characterization of a wastewater treatment plant (SRP000180)
170
244
+
Asn
GTT
[SRA]
>W1810693152
QLLC01000006
Alphaproteobacteria
Brevundimonas bullata HAMBI_262 [QLLC]
98461
98535
+
Asn
GTT
[ENA]
¡û
>W10109861
ADBM01000014
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
19995
19921
-
Asn
GTT
[ENA]
¡û
>C10102223
CP002102
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [CP002102]
1802400
1802326
-
Asn
GTT
[Ensembl]
¡û
>W11112298
ADBM01000014
Alphaproteobacteria
Brevundimonas subvibrioides ATCC 15264 [ADBM]
19995
19921
-
Asn
GTT
[ENA]
¡û
>W11123436
ADUI01000119
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
7032
7106
+
Asn
GTT
[ENA]
¡û
>W1511596055
LBNT01000005
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
134106
134180
+
Asn
GTT
[ENA]
¡û
>C161047045
CP012897
Alphaproteobacteria
Brevundimonas sp. DS20 [CP012897]
2419778
2419852
+
Asn
GTT
[Ensembl]
¡û
>C161089814
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
1264406
1264480
+
Asn
GTT
[Ensembl]
¡û
>W1610649184
LJHU01000091
Alphaproteobacteria
Brevundimonas sp. AAP58 [LJHU]
13687
13761
+
Asn
GTT
[ENA]
¡û
>W1610724334
LMEB01000004
Alphaproteobacteria
Brevundimonas sp. Root1279 [LMEB]
338237
338311
+
Asn
GTT
[ENA]
¡û
>W1610726213
LMFL01000030
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
9406
9332
-
Asn
GTT
[ENA]
¡û
>W1610726214
LMFL01000030
Alphaproteobacteria
Brevundimonas sp. Root1423 [LMFL]
9254
9180
-
Asn
GTT
[ENA]
¡û
>W1610727892
LMGT01000004
Alphaproteobacteria
Brevundimonas sp. Root608 [LMGT]
219276
219202
-
Asn
GTT
[ENA]
¡û
>W1610739655
LMPZ01000002
Alphaproteobacteria
Brevundimonas sp. Leaf363 [LMPZ]
1205094
1205020
-
Asn
GTT
[ENA]
¡û
>W1710576181
FOZV01000002
Alphaproteobacteria
Brevundimonas viscosa [FOZV]
248328
248254
-
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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