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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654916 (29 seq.)
>W1711501718
MKRY01000028
Alphaproteobacteria
Brevundimonas sp. 67-6 [MKRY]
6739
6813
+
Gly
CCC
[ENA]
¡û
>W1711718119
MTHE01000010
Alphaproteobacteria
Brevundimonas sp. ZS04 [MTHE]
86765
86839
+
Gly
CCC
[ENA]
¡û
>W1712106208
NIVP01000042
Alphaproteobacteria
Brevundimonas diminuta [NIVP]
150
76
-
Gly
CCC
[ENA]
¡û
>W131218289
ATXN01000008
Alphaproteobacteria
Brevundimonas naejangsanensis DSM 23858 [ATXN]
2614
2540
-
Gly
CCC
[ENA]
¡û
>WENV180013866
FPIC01005494
[FPIC] soil metagenome; Soil
87
13
-
Gly
CCC
[ENA]
¢þ
>WENV180101375
OAOU01044540
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
121
47
-
Gly
CCC
[ENA]
¢þ
>W141043001
AMFA01000062
Alphaproteobacteria
Brevundimonas diminuta 470-4 [AMFA]
8655
8729
+
Gly
CCC
[ENA]
¡û
>WENV181402512
OFTY01003002
[OFTY] sludge metagenome; sludge
922
996
+
Gly
CCC
[ENA]
¢þ
>WENV181732590
OGQD01066775
[OGQD] human gut metagenome; faeces
444
518
+
Gly
CCC
[ENA]
¢þ
>WENV183727579
PJTP01000024
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
157902
157976
+
Gly
CCC
[ENA]
¢þ
>WENV183728476
PJTQ01000069
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
38145
38071
-
Gly
CCC
[ENA]
¢þ
>WENV183730918
PJTS01002015
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
215
141
-
Gly
CCC
[ENA]
¢þ
>WENV183733424
PJTY01001929
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
4862
4788
-
Gly
CCC
[ENA]
¢þ
>WENV183735538
PJUB01000035
[PJUB] soil metagenome; Soil enriched on filter paper: alkali lignin treatment
127866
127940
+
Gly
CCC
[ENA]
¢þ
>WENV183738760
PJUE01000173
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
56226
56152
-
Gly
CCC
[ENA]
¢þ
>WENV183740037
PJUF01000178
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
20041
20115
+
Gly
CCC
[ENA]
¢þ
>WENV170646045
JQGF01014964
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
2
76
+
Gly
CCC
[ENA]
¢þ
>WENV170657398
JTFO01141525
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
206
132
-
Gly
CCC
[ENA]
¢þ
>C191094027
CP032707
Alphaproteobacteria
Brevundimonas naejangsanensis BRV3 [CP032707]
768473
768399
-
Gly
CCC
-
¡û
>C191134419
CP035093
Alphaproteobacteria
Brevundimonas diminuta [CP035093]
1096905
1096979
+
Gly
CCC
-
¡û
>C191157393
CP038027
Alphaproteobacteria
Brevundimonas naejangsanensis FS1091 [CP038027]
2915796
2915870
+
Gly
CCC
-
¡û
>C191220438
LR588407
Alphaproteobacteria
Brevundimonas vancanneytii NCTC9239 [LR588407]
2863443
2863369
-
Gly
CCC
-
¡û
>W141551905
JHOF01000001
Alphaproteobacteria
Brevundimonas naejangsanensis [JHOF]
40872
40946
+
Gly
CCC
[ENA]
¡û
>W1910182691
BJNC01000010
Alphaproteobacteria
Brevundimonas diminuta NBRC 14213 [BJNC]
86410
86484
+
Gly
CCC
[ENA]
¡û
>W1910374316
FUIE01000015
Alphaproteobacteria
Brevundimonas diminuta 3F5N [FUIE]
58767
58693
-
Gly
CCC
[ENA]
¡û
>W1911760343
QWTZ01000004
Alphaproteobacteria
Brevundimonas sp. LPMIX5 [QWTZ]
161403
161477
+
Gly
CCC
[ENA]
¡û
>W11123415
ADUI01000054
Alphaproteobacteria
Brevundimonas diminuta ATCC 11568 [ADUI]
70008
69934
-
Gly
CCC
[ENA]
¡û
>W1511596079
LBNT01000015
Alphaproteobacteria
Brevundimonas diminuta XGC1 [LBNT]
86221
86295
+
Gly
CCC
[ENA]
¡û
>C161089828
CP015614
Alphaproteobacteria
Brevundimonas naejangsanensis B1 [CP015614]
2246520
2246446
-
Gly
CCC
[Ensembl]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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