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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.654962 (118 seq.)
>W1710785109
LJHO01000015
Alphaproteobacteria
Novosphingobium sp. AAP1 [LJHO]
64254
64328
+
Gln
TTG
[ENA]
¡û
>W1710856819
LLZQ01000021
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
53482
53556
+
Gln
TTG
[ENA]
¡û
>W1710858215
LMAU01000002
Alphaproteobacteria
Tsuneonella troitsensis [LMAU]
562204
562130
-
Gln
TTG
[ENA]
¡û
>W1710868140
LMIV01000003
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
34707
34781
+
Gln
TTG
[ENA]
¡û
>W1710869717
LMJY01000004
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
19988
20062
+
Gln
TTG
[ENA]
¡û
>W1711072899
LSIA01000117
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
58927
59001
+
Gln
TTG
[ENA]
¡û
>W1711387060
MEGD01000056
Alphaproteobacteria
Novosphingobium sp. SCN 66-18 [MEGD]
12591
12665
+
Gln
TTG
[ENA]
¡û
>W1711437790
MIPT01000001
Alphaproteobacteria
Sphingomonas haloaromaticamans [MIPT]
4108005
4107931
-
Gln
TTG
[ENA]
¡û
>W1711503940
MKUB01000205
Alphaproteobacteria
Sphingomonadales bacterium 63-6 [MKUB]
33079
33153
+
Gln
TTG
[ENA]
¡û
>W1711632192
MPSB01000002
Alphaproteobacteria
Sphingomonas jeddahensis G39 [MPSB]
26139
26065
-
Gln
TTG
[ENA]
¡û
>W1711705042
MSQB01000018
Alphaproteobacteria
Novosphingobium panipatense [MSQB]
106714
106640
-
Gln
TTG
[ENA]
¡û
>W1711793254
MWLM01000003
Alphaproteobacteria
Novosphingobium sp. B 225 [MWLM]
2858
2932
+
Gln
TTG
[ENA]
¡û
>C171056568
CP017075
Alphaproteobacteria
Novosphingobium resinovorum SA1 [CP017075]
1744581
1744655
+
Gln
TTG
-
¡û
>W131104447
APCQ01000145
Alphaproteobacteria
Novosphingobium sp. B-7 [APCQ]
30402
30476
+
Gln
TTG
[ENA]
¡û
>W131237496
AUOP01000090
Alphaproteobacteria
Sphingomonas sp. JGI 0001003-H15 [AUOP]
4309
4383
+
Gln
TTG
[ENA]
¡û
>C014698
CP000248
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [CP000248]
2804473
2804547
+
Gln
TTG
[Ensembl]
¡û
>WENV180020041
FTCV01000897
[FTCV] metagenome; soil
2323
2249
-
Gln
TTG
[ENA]
¢þ
>WENV180020757
FTDB01000947
[FTDB] metagenome; soil
3916
3842
-
Gln
TTG
[ENA]
¢þ
>WENV180027798
FTIZ01099313
[FTIZ] metagenome; soil
334
260
-
Gln
TTG
[ENA]
¢þ
>WENV180040325
LLBY010681890
[LLBY] soil metagenome; soil from tomato rhizosphere
1263
1189
-
Gln
TTG
[ENA]
¢þ
>WENV180283027
OBIC01070272
[OBIC] beach sand metagenome; beach sand
61
135
+
Gln
TTG
[ENA]
¢þ
>WENV180291629
OBIV01109046
[OBIV] soil metagenome; Clay
239
165
-
Gln
TTG
[ENA]
¢þ
>WENV180294392
OBIY01113435
[OBIY] beach sand metagenome; beach sand
26
100
+
Gln
TTG
[ENA]
¢þ
>WENV180309090
OBJR01515852
[OBJR] soil metagenome; soil
144
218
+
Gln
TTG
[ENA]
¢þ
>WENV180309910
OBJS01081388
[OBJS] beach sand metagenome; beach sand
282
208
-
Gln
TTG
[ENA]
¢þ
>WENV180311503
OBJT01342059
[OBJT] soil metagenome; soil
158
84
-
Gln
TTG
[ENA]
¢þ
>WENV180344527
OBLL01017733
[OBLL] soil metagenome; soil
535
461
-
Gln
TTG
[ENA]
¢þ
>WENV180351329
OBLQ010044066
[OBLQ] soil metagenome; soil
1075
1149
+
Gln
TTG
[ENA]
¢þ
>WENV180690628
OCZS010015339
[OCZS] soil metagenome; soil
835
909
+
Gln
TTG
[ENA]
¢þ
>W141077985
ATHL01000156
Alphaproteobacteria
Novosphingobium lindaniclasticum LE124 [ATHL]
34314
34388
+
Gln
TTG
[ENA]
¡û
>WENV181165062
OEIR01552481
[OEIR] soil metagenome; soil
63
137
+
Gln
TTG
[ENA]
¢þ
>WENV181184417
OEKC01000154
[OEKC] metagenome; 1998
255
181
-
Gln
TTG
[ENA]
¢þ
>WENV181192611
OEPS010837626
[OEPS] soil metagenome; soil
110
36
-
Gln
TTG
[ENA]
¢þ
>WENV181222518
OFDB01002581
[OFDB] metagenome; soil
1211
1137
-
Gln
TTG
[ENA]
¢þ
>WENV181222863
OFDC01000422
[OFDC] hot springs metagenome; Water
22470
22396
-
Gln
TTG
[ENA]
¢þ
>WENV181227460
OFDN01011251
[OFDN] hot springs metagenome; Water
505
431
-
Gln
TTG
[ENA]
¢þ
>WENV181413097
OGCK01027790
[OGCK] hot springs metagenome; hot spring sediment
52
126
+
Gln
TTG
[ENA]
¢þ
>W141230379
BASZ01000002
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [BASZ]
345271
345345
+
Gln
TTG
[ENA]
¡û
>WENV183726811
PJTO01000191
[PJTO] soil metagenome; Soil (3) enriched on wood chips: beechwood xylan treatment
45792
45718
-
Gln
TTG
[ENA]
¢þ
>WENV183727889
PJTP01003343
[PJTP] soil metagenome; Soil (3) enriched on wood chips: alkali lignin treatment
300
374
+
Gln
TTG
[ENA]
¢þ
>WENV183733158
PJTY01000155
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
39850
39924
+
Gln
TTG
[ENA]
¢þ
>WENV183739126
PJUE01001992
[PJUE] feces metagenome; Chicken feces (3) enriched on wood chips: alkali lignin treatment
1800
1874
+
Gln
TTG
[ENA]
¢þ
>WENV170011056
APMI01041295
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
11575
11501
-
Gln
TTG
[ENA]
¢þ
>W141452308
JFBW01000002
Alphaproteobacteria
Sphingomonas jaspsi DSM 18422 [JFBW]
1543273
1543347
+
Gln
TTG
[ENA]
¡û
>WENV170991464
MWWA01205164
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
403
329
-
Gln
TTG
[ENA]
¢þ
>WENV171003294
NNBT01003593
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
4406
4480
+
Gln
TTG
[ENA]
¢þ
>W141484930
JFYZ01000002
Alphaproteobacteria
Novosphingobium resinovorum [JFYZ]
189013
188939
-
Gln
TTG
[ENA]
¡û
>C181192053
CP030352
Alphaproteobacteria
Novosphingobium sp. P6W [CP030352, CP030353]
2476575
2476649
+
Gln
TTG
-
¡û
>C191057021
CP028347
Alphaproteobacteria
Novosphingobium sp. THN1 [CP028347]
325907
325981
+
Gln
TTG
-
¡û
>C191121052
CP034179
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [CP034179]
236412
236486
+
Gln
TTG
-
¡û
>C191144185
CP035501
Alphaproteobacteria
Sphingosinicella sp. BN140058 [CP035501]
1655408
1655334
-
Gln
TTG
-
¡û
>C191170970
CP039695
Alphaproteobacteria
Novosphingobium sp. EMRT-2 [CP039695]
3612623
3612549
-
Gln
TTG
-
¡û
>W141564454
JIAU01000004
Alphaproteobacteria
Sphingomonas sp. URHD0057 [JIAU]
34884
34958
+
Gln
TTG
[ENA]
¡û
>W09100334
AAAV03000008
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [AAAV]
85009
85083
+
Gln
TTG
[ENA]
¡û
>W141779122
JONN01000002
Alphaproteobacteria
Sphingomonas astaxanthinifaciens DSM 22298 [JONN]
277440
277514
+
Gln
TTG
[ENA]
¡û
>W141779892
JOOE01000006
Alphaproteobacteria
Sphingomonas sp. UNC305MFCol5.2 [JOOE]
42469
42543
+
Gln
TTG
[ENA]
¡û
>C141006139
CP006644
Alphaproteobacteria
Sphingomonas sanxanigenens DSM 19645 = NX02 [CP006644]
1510647
1510573
-
Gln
TTG
[Ensembl]
¡û
>W1910651520
LYMM01000062
Alphaproteobacteria
Novosphingobium guangzhouense SA925 [LYMM]
96233
96307
+
Gln
TTG
[ENA]
¡û
>W1910822157
MWMO01000009
Alphaproteobacteria
Novosphingobium sp. PC22D [MWMO]
71965
71891
-
Gln
TTG
[ENA]
¡û
>W1911719066
QQWW01000003
Alphaproteobacteria
Sphingomonas sp. ABOLG ABOLG S-NIH.Pt13_0512 [QQWW]
1827
1753
-
Gln
TTG
[ENA]
¡û
>W1911737893
QTTB01000004
Alphaproteobacteria
Tsuneonella troitsensis KMM 6042 [QTTB]
1336161
1336087
-
Gln
TTG
[ENA]
¡û
>W1911767915
QXFK01000016
Alphaproteobacteria
Pelagerythrobacter aerophilus Ery1 [QXFK]
386129
386055
-
Gln
TTG
[ENA]
¡û
>W1911783384
QXTF01000003
Alphaproteobacteria
Sphingomonas edaphi DAC4 [QXTF]
207958
208032
+
Gln
TTG
[ENA]
¡û
>W1911802683
QYUM01000002
Alphaproteobacteria
Sphingomonas cavernae K2R01-6 [QYUM]
1237768
1237694
-
Gln
TTG
[ENA]
¡û
>W1810109415
PHHF01000075
Alphaproteobacteria
Sphingomonas fennica K101 [PHHF]
63880
63806
-
Gln
TTG
[ENA]
¡û
>W1810121206
PHUF01000002
Alphaproteobacteria
Novosphingobium kunmingense CGMCC 1.12274 [PHUF]
1112404
1112478
+
Gln
TTG
[ENA]
¡û
>W1810195679
PKRT01000001
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
1799456
1799530
+
Gln
TTG
[ENA]
¡û
>W1810239607
PPSM01000014
Alphaproteobacteria
Novosphingobium sp. HII-3 [PPSM]
688619
688545
-
Gln
TTG
[ENA]
¡û
>W1810390271
PXYI01000002
Alphaproteobacteria
Sphingomonas deserti GL-C-18 [PXYI]
750834
750908
+
Gln
TTG
[ENA]
¡û
>W1810463744
PZZU01000018
Alphaproteobacteria
Novosphingobium sp. GV064 [PZZU]
2904
2830
-
Gln
TTG
[ENA]
¡û
>W1810477335
QAOS01000018
Alphaproteobacteria
Novosphingobium sp. GV055 [QAOS]
2904
2830
-
Gln
TTG
[ENA]
¡û
>W1810513889
QBUA01000018
Alphaproteobacteria
Novosphingobium sp. GV061 [QBUA]
2904
2830
-
Gln
TTG
[ENA]
¡û
>W1810514102
QBUE01000018
Alphaproteobacteria
Novosphingobium sp. GV079 [QBUE]
2904
2830
-
Gln
TTG
[ENA]
¡û
>W1810514311
QBUI01000018
Alphaproteobacteria
Novosphingobium sp. GV027 [QBUI]
2904
2830
-
Gln
TTG
[ENA]
¡û
>W1810579416
QEQM01000001
Alphaproteobacteria
Sphingomonas sp. URHD0007 [QEQM]
437866
437792
-
Gln
TTG
[ENA]
¡û
>W1810677127
QKMM01000005
Alphaproteobacteria
Novosphingobium sp. B3058 49 [QKMM]
157794
157720
-
Gln
TTG
[ENA]
¡û
>W1810725243
QOCK01000002
Alphaproteobacteria
'Sphingomonas ginsengisoli' Hoang et al. 2012 KCTC 12630 [QOCK]
265962
265888
-
Gln
TTG
[ENA]
¡û
>W1810917836
QWDF01000001
Alphaproteobacteria
Sphingomonas mesophila SYSUP0001 [QWDF]
1246258
1246184
-
Gln
TTG
[ENA]
¡û
>C151048374
CP009291
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [CP009291]
3703567
3703493
-
Gln
TTG
[Ensembl]
¡û
>W1510019423
BBWU01000038
Alphaproteobacteria
Sphingomonas changbaiensis NBRC 104936 [BBWU]
8186
8112
-
Gln
TTG
[ENA]
¡û
>W1510019767
BBXA01000032
Alphaproteobacteria
Novosphingobium sp. MD-1 [BBXA]
139316
139390
+
Gln
TTG
[ENA]
¡û
>W1510024400
CCBH010000174
Alphaproteobacteria
Novosphingobium sp. KN65.2 [CCBH]
102401
102327
-
Gln
TTG
[ENA]
¡û
>C11116198
FR856862
Alphaproteobacteria
Novosphingobium sp. PP1Y [FR856862]
2131270
2131196
-
Gln
TTG
[Ensembl]
¡û
>W1510757019
JACU01000002
Alphaproteobacteria
Novosphingobium barchaimii LL02 [JACU]
895347
895421
+
Gln
TTG
[ENA]
¡û
>W1511357005
JRVC01000005
Alphaproteobacteria
Novosphingobium subterraneum DSM 12447 [JRVC]
74505
74431
-
Gln
TTG
[ENA]
¡û
>W1511519432
JXZE01000016
Alphaproteobacteria
Novosphingobium sp. P6W [JXZE]
108510
108436
-
Gln
TTG
[ENA]
¡û
>W1511587109
LAZX01000094
Alphaproteobacteria
Sphingomonas sp. Ag1 [LAZX]
879000
878926
-
Gln
TTG
[ENA]
¡û
>C161099957
CP016591
Alphaproteobacteria
Tsuneonella dongtanensis KCTC 22672 [CP016591]
1757165
1757091
-
Gln
TTG
[Ensembl]
¡û
>W121009681
AGFM01000007
Alphaproteobacteria
Novosphingobium pentaromativorans US6-1 [AGFM]
65636
65710
+
Gln
TTG
[ENA]
¡û
>W121081101
AKFJ01000150
Alphaproteobacteria
Novosphingobium sp. Rr 2-17 [AKFJ]
53879
53805
-
Gln
TTG
[ENA]
¡û
>W121086722
AKKE01000069
Alphaproteobacteria
Novosphingobium sp. AP12 [AKKE]
6270
6344
+
Gln
TTG
[ENA]
¡û
>W1610071244
BCTX01000044
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
8295
8221
-
Gln
TTG
[ENA]
¡û
>W1610076560
BCYV01000009
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
180058
180132
+
Gln
TTG
[ENA]
¡û
>W1610077051
BCZF01000028
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
74532
74458
-
Gln
TTG
[ENA]
¡û
>C131011880
CP004036
Alphaproteobacteria
Sphingomonas sp. MM-1 [CP004036]
1542922
1542848
-
Gln
TTG
[Ensembl]
¡û
>W1610535232
JRQQ01000010
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
112110
112036
-
Gln
TTG
[ENA]
¡û
>W1610550564
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
1524105
1524179
+
Gln
TTG
[ENA]
¡û
>W1610590955
LDRW01000002
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
22924
22998
+
Gln
TTG
[ENA]
¡û
>W1610614835
LGJH01000160
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
20230
20304
+
Gln
TTG
[ENA]
¡û
>W1610648915
LJHO01000015
Alphaproteobacteria
Novosphingobium sp. AAP1 [LJHO]
64254
64328
+
Gln
TTG
[ENA]
¡û
>W1610719200
LLZQ01000021
Alphaproteobacteria
Novosphingobium sp. FSW06-99 [LLZQ]
53482
53556
+
Gln
TTG
[ENA]
¡û
>W1610720561
LMAU01000002
Alphaproteobacteria
Tsuneonella troitsensis [LMAU]
562204
562130
-
Gln
TTG
[ENA]
¡û
>W1610730486
LMIV01000003
Alphaproteobacteria
Sphingomonas sp. Root241 [LMIV]
34707
34781
+
Gln
TTG
[ENA]
¡û
>W1610732063
LMJY01000004
Alphaproteobacteria
Novosphingobium sp. Leaf2 [LMJY]
19988
20062
+
Gln
TTG
[ENA]
¡û
>W1610912159
LSIA01000117
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
58927
59001
+
Gln
TTG
[ENA]
¡û
>W1611004950
LXQM01000001
Alphaproteobacteria
Croceibacterium salegens XY-R17 [LXQM]
183474
183400
-
Gln
TTG
[ENA]
¡û
>W1710068609
BCTX01000044
Alphaproteobacteria
Novosphingobium naphthalenivorans NBRC 102051 [BCTX]
8295
8221
-
Gln
TTG
[ENA]
¡û
>W1710074249
BCYV01000009
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
180058
180132
+
Gln
TTG
[ENA]
¡û
>W1710074740
BCZF01000028
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
74532
74458
-
Gln
TTG
[ENA]
¡û
>W1710083113
BDJB01000014
Alphaproteobacteria
Sphingomonas sp. TZW2008 [BDJB]
245335
245261
-
Gln
TTG
[ENA]
¡û
>W1710507984
FMVR01000003
Alphaproteobacteria
Novosphingobium aromaticivorans stygium [FMVR]
470131
470205
+
Gln
TTG
[ENA]
¡û
>W1710562064
FOOR01000005
Alphaproteobacteria
Novosphingobium sp. CF614 [FOOR]
38704
38778
+
Gln
TTG
[ENA]
¡û
>W1710604572
FVZE01000001
Alphaproteobacteria
Novosphingobium mathurense [FVZE]
447773
447699
-
Gln
TTG
[ENA]
¡û
>W1710605996
FWXL01000005
Alphaproteobacteria
Novosphingobium sp. B1 [FWXL]
363000
363074
+
Gln
TTG
[ENA]
¡û
>W1710637701
JRQQ01000010
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
112110
112036
-
Gln
TTG
[ENA]
¡û
>W1710660327
JXQC01000003
Alphaproteobacteria
Erythrobacter sp. SG61-1L [JXQC]
1524105
1524179
+
Gln
TTG
[ENA]
¡û
>W1710710235
LDRW01000002
Alphaproteobacteria
Novosphingobium barchaimii [LDRW]
22924
22998
+
Gln
TTG
[ENA]
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>W1710736081
LGJH01000160
Alphaproteobacteria
Novosphingobium sp. ST904 [LGJH]
20230
20304
+
Gln
TTG
[ENA]
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Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
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Direction
AA
Anticodon
Genome/Seq. Info.
Decision
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Representative sequence of each cluster
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