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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655014 (71 seq.)
>W1710785170
LJHQ01000008
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
19261
19335
+
Asn
GTT
[ENA]
¡û
>W1710858010
LMAR01000012
Alphaproteobacteria
Bosea thiooxidans [LMAR]
55031
55105
+
Asn
GTT
[ENA]
¡û
>W1710869478
LMJT01000011
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
98918
98992
+
Asn
GTT
[ENA]
¡û
>W1710869524
LMJU01000015
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
401072
400998
-
Asn
GTT
[ENA]
¡û
>W1710869633
LMJW01000019
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
26895
26969
+
Asn
GTT
[ENA]
¡û
>W1710879536
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
624777
624703
-
Asn
GTT
[ENA]
¡û
>W1710893373
LNER01000530
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
623
697
+
Asn
GTT
[ENA]
¡û
>W1711072940
LSIB01000085
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
19034
18960
-
Asn
GTT
[ENA]
¡û
>W1711073118
LSIG01000035
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
77369
77443
+
Asn
GTT
[ENA]
¡û
>W1711073315
LSIK01000303
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
5632
5558
-
Asn
GTT
[ENA]
¡û
>W1711073826
LSIY01000232
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
5649
5575
-
Asn
GTT
[ENA]
¡û
>W1711074349
LSJL01000106
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
12789
12863
+
Asn
GTT
[ENA]
¡û
>W1711074514
LSJP01000264
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
5623
5549
-
Asn
GTT
[ENA]
¡û
>W1711074585
LSJR01000046
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
5645
5571
-
Asn
GTT
[ENA]
¡û
>W1711074750
LSJU01001377
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
1472
1546
+
Asn
GTT
[ENA]
¡û
>W1711075567
LSKN01000099
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
61777
61703
-
Asn
GTT
[ENA]
¡û
>W1711502369
MKSQ01000007
Alphaproteobacteria
Bosea sp. 67-29 [MKSQ]
50683
50757
+
Asn
GTT
[ENA]
¡û
>W1711505912
MKVY01000033
Alphaproteobacteria
Rhizobiales bacterium 65-9 [MKVY]
26065
26139
+
Asn
GTT
[ENA]
¡û
>C171049966
CP016464
Alphaproteobacteria
Bosea sp. RAC05 [CP016464]
3109682
3109756
+
Asn
GTT
-
¡û
>C171057742
CP017147
Alphaproteobacteria
Bosea vaviloviae Vaf18 [CP017147]
4673941
4674015
+
Asn
GTT
-
¡û
>WENV181415313
OGCL01007678
[OGCL] hot springs metagenome; Hot spring water
1178
1104
-
Asn
GTT
[ENA]
¢þ
>WENV183741025
PJUF01029071
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
505
579
+
Asn
GTT
[ENA]
¢þ
>WENV170680720
LFEF01014285
[LFEF] freshwater metagenome; waterbloom
233
307
+
Asn
GTT
[ENA]
¢þ
>WENV170712666
LNFM01016178
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
27252
27178
-
Asn
GTT
[ENA]
¢þ
>WENV170713470
LNFM01032434
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
4452
4378
-
Asn
GTT
[ENA]
¢þ
>WENV171003171
NNBT01002090
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
21617
21691
+
Asn
GTT
[ENA]
¢þ
>WENV171003755
NNBV01000600
[NNBV] plant metagenome; symbiotic tissue sample KVS11
54450
54376
-
Asn
GTT
[ENA]
¢þ
>C181063214
CP022372
Alphaproteobacteria
Bosea sp. AS-1 [CP022372]
3018969
3018895
-
Asn
GTT
-
¡û
>C191014046
CP017946
Alphaproteobacteria
Bosea sp. Tri-49 [CP017946]
709444
709370
-
Asn
GTT
-
¡û
>W141805297
JPKG01000028
Alphaproteobacteria
Bosea sp. LC85 [JPKG]
118529
118455
-
Asn
GTT
[ENA]
¡û
>W141815813
JQJJ01000011
Alphaproteobacteria
Bosea sp. UNC402CLCol [JQJJ]
62161
62087
-
Asn
GTT
[ENA]
¡û
>W1910501706
FYAS01000002
Alphaproteobacteria
Bosea sp. CS1GBMeth4 [FYAS]
156564
156490
-
Asn
GTT
[ENA]
¡û
>W1910635426
LNCQ01000055
Alphaproteobacteria
Bosea sp. FBZP-16 FBZP-16 [LNCQ]
26678
26752
+
Asn
GTT
[ENA]
¡û
>W1910840134
MZXT01000010
Alphaproteobacteria
Bosea sp. Tri-39 [MZXT]
291445
291371
-
Asn
GTT
[ENA]
¡û
>W1910840193
MZXU01000017
Alphaproteobacteria
Bosea sp. Tri-54 [MZXU]
1288146
1288072
-
Asn
GTT
[ENA]
¡û
>W1910847634
NBDP01000003
Alphaproteobacteria
Bosea sp. Tri-44 [NBDP]
358484
358410
-
Asn
GTT
[ENA]
¡û
>W1810252029
PQFZ01000029
Alphaproteobacteria
Bosea psychrotolerans 1131 [PQFZ]
36002
36076
+
Asn
GTT
[ENA]
¡û
>W1810463366
PZZM01000001
Alphaproteobacteria
Bosea sp. 124 [PZZM]
4748549
4748623
+
Asn
GTT
[ENA]
¡û
>W1810676891
QKMI01000003
Alphaproteobacteria
Bosea sp. CF476 [QKMI]
95547
95473
-
Asn
GTT
[ENA]
¡û
>W1810783310
QQTO01000020
Alphaproteobacteria
Bosea caraganae RCAM04680 [QQTO]
34619
34693
+
Asn
GTT
[ENA]
¡û
>W1810783360
QQTP01000013
Alphaproteobacteria
Bosea caraganae RCAM04685 [QQTP]
34619
34693
+
Asn
GTT
[ENA]
¡û
>W1511353023
JROW01000230
Alphaproteobacteria
Methylobacterium sp. ZNC0032 [JROW]
626
552
-
Asn
GTT
[ENA]
¡û
>C161070674
CP014301
Alphaproteobacteria
Bosea sp. PAMC 26642 [CP014301]
1642062
1642136
+
Asn
GTT
[Ensembl]
¡û
>W1610550607
JXTJ01000001
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
105558
105484
-
Asn
GTT
[ENA]
¡û
>W1610617183
LGSZ01000059
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
49417
49491
+
Asn
GTT
[ENA]
¡û
>W1610648976
LJHQ01000008
Alphaproteobacteria
Bosea sp. AAP35 [LJHQ]
19261
19335
+
Asn
GTT
[ENA]
¡û
>W1610720356
LMAR01000012
Alphaproteobacteria
Bosea thiooxidans [LMAR]
55031
55105
+
Asn
GTT
[ENA]
¡û
>W1610731824
LMJT01000011
Alphaproteobacteria
Bosea sp. Root381 [LMJT]
98918
98992
+
Asn
GTT
[ENA]
¡û
>W1610731870
LMJU01000015
Alphaproteobacteria
Bosea sp. Root670 [LMJU]
401072
400998
-
Asn
GTT
[ENA]
¡û
>W1610731979
LMJW01000019
Alphaproteobacteria
Bosea sp. Root483D1 [LMJW]
26895
26969
+
Asn
GTT
[ENA]
¡û
>W1610741882
LMRT01000014
Alphaproteobacteria
Bosea sp. Leaf344 [LMRT]
624777
624703
-
Asn
GTT
[ENA]
¡û
>W1610753639
LNER01000530
Alphaproteobacteria
Rhizobiales bacterium Ga0074135 [LNER]
623
697
+
Asn
GTT
[ENA]
¡û
>W1610912200
LSIB01000085
Alphaproteobacteria
Rhizobiales bacterium CCH3-A5 [LSIB]
19034
18960
-
Asn
GTT
[ENA]
¡û
>W1610912423
LSIG01000035
Alphaproteobacteria
Rhizobiales bacterium CCH10-E5 [LSIG]
77369
77443
+
Asn
GTT
[ENA]
¡û
>W1610912620
LSIK01000303
Alphaproteobacteria
Rhizobiales bacterium CCH9-A3 [LSIK]
5632
5558
-
Asn
GTT
[ENA]
¡û
>W1610913131
LSIY01000232
Alphaproteobacteria
Bradyrhizobium sp. CCH1-B1 [LSIY]
5649
5575
-
Asn
GTT
[ENA]
¡û
>W1610913654
LSJL01000106
Alphaproteobacteria
Bradyrhizobium sp. CCH5-A9 [LSJL]
12789
12863
+
Asn
GTT
[ENA]
¡û
>W1610913819
LSJP01000264
Alphaproteobacteria
Rhizobiales bacterium CCH6-A4 [LSJP]
5623
5549
-
Asn
GTT
[ENA]
¡û
>W1610913890
LSJR01000046
Alphaproteobacteria
Rhizobiales bacterium CCH8-D1 [LSJR]
5645
5571
-
Asn
GTT
[ENA]
¡û
>W1610914055
LSJU01001377
Alphaproteobacteria
Erythrobacter donghaensis [LSJU]
1472
1546
+
Asn
GTT
[ENA]
¡û
>W1610914872
LSKN01000099
Alphaproteobacteria
Methylobacterium sp. CCH7-A2 [LSKN]
61777
61703
-
Asn
GTT
[ENA]
¡û
>W1710064189
BCQA01000001
Alphaproteobacteria
Bosea sp. BIWAKO-01 [BCQA]
4673430
4673504
+
Asn
GTT
[ENA]
¡û
>W1710515703
FNBZ01000006
Alphaproteobacteria
Bosea robiniae [FNBZ]
229565
229639
+
Asn
GTT
[ENA]
¡û
>W1710538939
FNUY01000002
Alphaproteobacteria
Bosea lathyri [FNUY]
131074
131000
-
Asn
GTT
[ENA]
¡û
>W1710544039
FOAN01000010
Alphaproteobacteria
Bosea lupini [FOAN]
181615
181541
-
Asn
GTT
[ENA]
¡û
>W1710556999
FOKP01000016
Alphaproteobacteria
Bosea sp. CRIB-10 DSM 18164 [FOKP]
123625
123699
+
Asn
GTT
[ENA]
¡û
>W1710564898
FOQV01000001
Alphaproteobacteria
Bosea sp. OK403 [FOQV]
1295605
1295679
+
Asn
GTT
[ENA]
¡û
>W1710596437
FTMO01000003
Alphaproteobacteria
Bosea sp. TND4EK4 [FTMO]
201179
201253
+
Asn
GTT
[ENA]
¡û
>W1710603277
FUYX01000003
Alphaproteobacteria
Bosea thiooxidans [FUYX]
234511
234437
-
Asn
GTT
[ENA]
¡û
>W1710660442
JXTJ01000001
Alphaproteobacteria
Bosea sp. WAO [JXTJ]
105558
105484
-
Asn
GTT
[ENA]
¡û
>W1710742797
LGSZ01000059
Alphaproteobacteria
Bosea vaviloviae [LGSZ]
49417
49491
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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