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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655022 (33 seq.)
>W1710871483
LMLI01000016
Gammaproteobacteria
Serratia sp. Leaf50 [LMLI]
358156
358082
-
Gln
TTG
[ENA]
¡û
>W1710871518
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
1145704
1145630
-
Gln
TTG
[ENA]
¡û
>WENV170708576
LNAP01098709
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
224
150
-
Gln
TTG
[ENA]
¢þ
>C181035747
CP019062
Gammaproteobacteria
Rahnella sikkimica ERMR1:05 [CP019062]
2404503
2404577
+
Gln
TTG
-
¡û
>C191087404
CP032296
Gammaproteobacteria
Rahnella aquatilis ZF7 [CP032296]
3477771
3477845
+
Gln
TTG
-
¡û
>C191126441
CP034481
Gammaproteobacteria
Rahnella aquatilis KM25 [CP034481]
3398989
3399063
+
Gln
TTG
-
¡û
>C191126517
CP034482
Gammaproteobacteria
Rahnella aquatilis KM12 [CP034482]
3399686
3399760
+
Gln
TTG
-
¡û
>C191126594
CP034483
Gammaproteobacteria
Rahnella aquatilis KM05 [CP034483]
3517153
3517227
+
Gln
TTG
-
¡û
>C191151744
CP036490
Gammaproteobacteria
Rahnella aquatilis MEM40 [CP036490]
1171373
1171447
+
Gln
TTG
-
¡û
>W141710419
JMPJ01000026
Gammaproteobacteria
Ewingella americana ATCC 33852 [JMPJ]
50779
50705
-
Gln
TTG
[ENA]
¡û
>W141710727
JMPO01000114
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [JMPO]
61737
61811
+
Gln
TTG
[ENA]
¡û
>W141816166
JQJR01000003
Gammaproteobacteria
Rahnella sp. WP5 [JQJR]
405569
405495
-
Gln
TTG
[ENA]
¡û
>W1910584963
JYDG01000013
Gammaproteobacteria
Rahnella sp. AN3-3W3 [JYDG]
229370
229296
-
Gln
TTG
[ENA]
¡û
>W1910649375
LXYV01000788
Gammaproteobacteria
Ewingella americana BRK18a [LXYV]
331401
331475
+
Gln
TTG
[ENA]
¡û
>W1910655854
MAEN01000001
Gammaproteobacteria
Rahnella victoriana BRK18a [MAEN]
32255
32181
-
Gln
TTG
[ENA]
¡û
>W1910696196
MEHU01000035
Gammaproteobacteria
Enterobacteriaceae bacterium Larv1_ips [MEHU]
894354
894428
+
Gln
TTG
[ENA]
¡û
>W1910750403
MJIB01000005
Gammaproteobacteria
Rahnella sp. Larv3_ips [MJIB]
419301
419375
+
Gln
TTG
[ENA]
¡û
>W1911239329
NSDJ01000001
Gammaproteobacteria
Rahnella variigena CIP 105588 [NSDJ]
2091130
2091056
-
Gln
TTG
[ENA]
¡û
>W1911686164
QKVV01000001
Gammaproteobacteria
Rahnella variigena VCR3 [QKVV]
1879654
1879580
-
Gln
TTG
[ENA]
¡û
>W1911693618
QLTF01000004
Gammaproteobacteria
Rahnella sp. NFIX50 [QLTF]
273482
273556
+
Gln
TTG
[ENA]
¡û
>W1810149964
PITQ01000001
Gammaproteobacteria
Rahnella sp. AA [PITQ]
1017809
1017735
-
Gln
TTG
[ENA]
¡û
>W1810239906
PPSR01000001
Gammaproteobacteria
Rahnella aquatilis DLL7529 [PPSR]
221560
221634
+
Gln
TTG
[ENA]
¡û
>C11118334
CP002505
Gammaproteobacteria
Rahnella aceris Y9602 [CP002505]
3451350
3451424
+
Gln
TTG
[Ensembl]
¡û
>W1511433715
JUHL01000002
Gammaproteobacteria
Rahnella aquatilis OV588 [JUHL]
156968
157042
+
Gln
TTG
[ENA]
¡û
>W1511433800
JUHM01000006
Gammaproteobacteria
Rahnella aquatilis OV744 [JUHM]
197354
197280
-
Gln
TTG
[ENA]
¡û
>C121009625
CP003244
Gammaproteobacteria
Rahnella aquatilis CIP 78.65 = ATCC 33071 [CP003244]
3440490
3440564
+
Gln
TTG
[Ensembl]
¡û
>W1610071027
BCTT01000005
Gammaproteobacteria
Serratia grimesii NBRC 13537 [BCTT]
315129
315055
-
Gln
TTG
[ENA]
¡û
>W121062073
AJHJ01000011
Gammaproteobacteria
Serratia sp. M24T3 [AJHJ]
59758
59832
+
Gln
TTG
[ENA]
¡û
>W1610186140
FBSD01000008
Gammaproteobacteria
Serratia grimesii Serratia [FBSD]
364289
364215
-
Gln
TTG
[ENA]
¡û
>W1610733829
LMLI01000016
Gammaproteobacteria
Serratia sp. Leaf50 [LMLI]
358156
358082
-
Gln
TTG
[ENA]
¡û
>W1610733864
LMLJ01000001
Gammaproteobacteria
Serratia sp. Leaf51 [LMLJ]
1145704
1145630
-
Gln
TTG
[ENA]
¡û
>W1710068392
BCTT01000005
Gammaproteobacteria
Serratia grimesii NBRC 13537 [BCTT]
315129
315055
-
Gln
TTG
[ENA]
¡û
>W1710187756
FBSD01000008
Gammaproteobacteria
Serratia grimesii Serratia [FBSD]
364289
364215
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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