This is the navigation skips to jump to main contents
Jump to main contents.
tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655108 (38 seq.)
>W1710906972
LNOL01000006
Betaproteobacteria
Alcaligenes faecalis [LNOL]
29625
29699
+
Arg
CCG
[ENA]
¡û
>W1710995938
LQAS01000005
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
115303
115377
+
Arg
CCG
[ENA]
¡û
>W1711710519
MSZN01000028
Betaproteobacteria
Alcaligenes faecalis [MSZN]
26563
26489
-
Arg
CCG
[ENA]
¡û
>W1711710573
MSZO01000020
Betaproteobacteria
Alcaligenes faecalis [MSZO]
67970
67896
-
Arg
CCG
[ENA]
¡û
>W1711710593
MSZP01000003
Betaproteobacteria
Alcaligenes faecalis [MSZP]
119724
119798
+
Arg
CCG
[ENA]
¡û
>W1711710681
MSZQ01000028
Betaproteobacteria
Alcaligenes faecalis [MSZQ]
29616
29690
+
Arg
CCG
[ENA]
¡û
>W1711710683
MSZR01000001
Betaproteobacteria
Alcaligenes faecalis [MSZR]
119704
119778
+
Arg
CCG
[ENA]
¡û
>W1711711895
MTBI01000002
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [MTBI]
874386
874312
-
Arg
CCG
[ENA]
¡û
>C171115492
CP021079
Betaproteobacteria
Alcaligenes faecalis P156 [CP021079]
405598
405672
+
Arg
CCG
-
¡û
>W131051786
AMXV01000051
Betaproteobacteria
Alcaligenes sp. HPC1271 [AMXV]
70871
70797
-
Arg
CCG
[ENA]
¡û
>W131223065
AUBT01000010
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus DSM 16503 [AUBT]
134674
134748
+
Arg
CCG
[ENA]
¡û
>W141104424
AVOG02000023
Betaproteobacteria
Alcaligenes sp. EGD-AK7 [AVOG]
315068
314994
-
Arg
CCG
[ENA]
¡û
>W141237742
BBJQ01000012
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BBJQ]
64256
64182
-
Arg
CCG
[ENA]
¡û
>WENV170645969
JQGF01002412
[JQGF] wastewater metagenome; domestic wastewater sediment treated with ammonia and hydroxylamine at 100mg /litre each
1744
1818
+
Arg
CCG
[ENA]
¢þ
>WENV170655362
JTFN01025389
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
101
27
-
Arg
CCG
[ENA]
¢þ
>WENV170655814
JTFN01078926
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
948
874
-
Arg
CCG
[ENA]
¢þ
>WENV170655964
JTFN01104004
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
2
76
+
Arg
CCG
[ENA]
¢þ
>WENV170656104
JTFN01135111
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
2
76
+
Arg
CCG
[ENA]
¢þ
>WENV170656875
JTFO01053607
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
302
376
+
Arg
CCG
[ENA]
¢þ
>WENV170657144
JTFO01091445
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
101
27
-
Arg
CCG
[ENA]
¢þ
>WENV170657263
JTFO01114016
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
204
130
-
Arg
CCG
[ENA]
¢þ
>WENV170657525
JTFO01179389
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
204
130
-
Arg
CCG
[ENA]
¢þ
>C181053210
CP021641
Betaproteobacteria
Alcaligenes faecalis JQ135 [CP021641]
404092
404166
+
Arg
CCG
-
¡û
>C181088569
CP023667
Betaproteobacteria
Alcaligenes faecalis DSM 30030 [CP023667]
139812
139886
+
Arg
CCG
-
¡û
>C191085247
CP032153
Betaproteobacteria
Alcaligenes aquatilis QD168 [CP032153]
377230
377304
+
Arg
CCG
-
¡û
>C191091147
CP032521
Betaproteobacteria
Alcaligenes faecalis J481 [CP032521]
2889584
2889658
+
Arg
CCG
-
¡û
>C191113936
CP033861
Betaproteobacteria
Alcaligenes faecalis FDAARGOS_491 [CP033861]
1414491
1414565
+
Arg
CCG
-
¡û
>C191149633
CP036294
Betaproteobacteria
Alcaligenes faecalis AN70 [CP036294]
2264032
2264106
+
Arg
CCG
-
¡û
>W1810583895
QEXO01000002
Betaproteobacteria
Alcaligenes faecalis YBY [QEXO]
903805
903731
-
Arg
CCG
[ENA]
¡û
>W1511321008
JQCV01000002
Betaproteobacteria
Alcaligenes faecalis MOR02 [JQCV]
203129
203203
+
Arg
CCG
[ENA]
¡û
>W1511537466
JZBR01000007
Betaproteobacteria
Alcaligenes faecalis ZD02 [JZBR]
125860
125934
+
Arg
CCG
[ENA]
¡û
>C161051371
CP013119
Betaproteobacteria
Alcaligenes faecalis ZD02 [CP013119]
1942642
1942568
-
Arg
CCG
[Ensembl]
¡û
>W121091220
AKMR01000013
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NCIB 8687 [AKMR]
560986
560912
-
Arg
CCG
[ENA]
¡û
>W1610093572
CYTB01000006
Betaproteobacteria
Alcaligenes faecalis ATCC8750 [CYTB]
122131
122205
+
Arg
CCG
[ENA]
¡û
>W1610765986
LNOL01000006
Betaproteobacteria
Alcaligenes faecalis [LNOL]
29625
29699
+
Arg
CCG
[ENA]
¡û
>W1610850595
LQAS01000005
Betaproteobacteria
Alcaligenes phenolicus subsp. phenolicus [LQAS]
115303
115377
+
Arg
CCG
[ENA]
¡û
>W1610921503
LSUO01000003
Betaproteobacteria
Alcaligenes faecalis P156 [LSUO]
538436
538362
-
Arg
CCG
[ENA]
¡û
>W1710082548
BDHG01000010
Betaproteobacteria
Alcaligenes faecalis subsp. faecalis NBRC 13111 [BDHG]
64455
64381
-
Arg
CCG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK