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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655125 (41 seq.)
>W1710919675
LNXV01000036
Gammaproteobacteria
Legionella brunensis [LNXV]
76973
77047
+
Gln
TTG
[ENA]
¡û
>W1710919788
LNXY01000020
Gammaproteobacteria
Legionella drozanskii LLAP-1 [LNXY]
744992
745066
+
Gln
TTG
[ENA]
¡û
>W1710919897
LNYB01000018
Gammaproteobacteria
Legionella feeleii [LNYB]
56030
56104
+
Gln
TTG
[ENA]
¡û
>W1710919954
LNYC01000031
Gammaproteobacteria
Legionella geestiana [LNYC]
29811
29885
+
Gln
TTG
[ENA]
¡û
>W1710920060
LNYF01000012
Gammaproteobacteria
Legionella hackeliae [LNYF]
306981
307055
+
Gln
TTG
[ENA]
¡û
>W1710920106
LNYG01000013
Gammaproteobacteria
Legionella jamestowniensis [LNYG]
821180
821254
+
Gln
TTG
[ENA]
¡û
>W1710920188
LNYI01000028
Gammaproteobacteria
Legionella lansingensis [LNYI]
226430
226504
+
Gln
TTG
[ENA]
¡û
>W1710920231
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
2378740
2378666
-
Gln
TTG
[ENA]
¡û
>W1710920262
LNYK01000002
Gammaproteobacteria
Legionella londiniensis [LNYK]
10496
10570
+
Gln
TTG
[ENA]
¡û
>W1710920441
LNYO01000024
Gammaproteobacteria
Legionella nautarum [LNYO]
554267
554193
-
Gln
TTG
[ENA]
¡û
>W1711252404
LYOZ01000018
Gammaproteobacteria
Legionella jamestowniensis [LYOZ]
44708
44634
-
Gln
TTG
[ENA]
¡û
>W1711503367
MKTN01000043
Gammaproteobacteria
Gammaproteobacteria bacterium 39-13 [MKTN]
10086
10012
-
Gln
TTG
[ENA]
¡û
>W141245589
CALJ01000018
Gammaproteobacteria
Legionella tunisiensis LegM [CALJ]
9209
9283
+
Gln
TTG
[ENA]
¡û
>W141273105
CCSB01000001
Gammaproteobacteria
Legionella massiliensis [CCSB]
133859
133933
+
Gln
TTG
[ENA]
¡û
>W141273863
CCVW01000001
Gammaproteobacteria
Legionella massiliensis [CCVW]
133859
133933
+
Gln
TTG
[ENA]
¡û
>WENV170578150
FSSH01039892
[FSSH] freshwater metagenome; drinking water
195
269
+
Gln
TTG
[ENA]
¢þ
>C181019743
CP016397
Gammaproteobacteria
Legionella clemsonensis CDC-D5610 [CP016397]
413658
413584
-
Gln
TTG
-
¡û
>C181225059
LT906451
Gammaproteobacteria
Legionella lansingensis NCTC12830 [LT906451]
2624834
2624908
+
Gln
TTG
-
¡û
>C191159061
CP038271
Gammaproteobacteria
Legionella geestiana 1308 [CP038271]
968397
968471
+
Gln
TTG
-
¡û
>C191209831
LR134383
Gammaproteobacteria
Legionella jordanis NCTC11533 [LR134383]
2783078
2783152
+
Gln
TTG
-
¡û
>W141558778
JHWF01000006
Gammaproteobacteria
Legionella lansingensis DSM 19556 = ATCC 49751 [JHWF]
110299
110373
+
Gln
TTG
[ENA]
¡û
>W141561022
JHYC01000010
Gammaproteobacteria
Legionella fairfieldensis ATCC 49588 [JHYC]
67756
67830
+
Gln
TTG
[ENA]
¡û
>W141561535
JHYN01000014
Gammaproteobacteria
Legionella geestiana DSM 21217 [JHYN]
29918
29992
+
Gln
TTG
[ENA]
¡û
>SRA1005112
SRR006907.37251
metagenomic water samples (SRP000427)
83
157
+
Gln
TTG
[SRA]
>C151103872
LN681225
Gammaproteobacteria
Legionella hackeliae ATCC 35250 [LN681225]
3061238
3061312
+
Gln
TTG
[Ensembl]
¡û
>W1610580142
LBAX01000010
Gammaproteobacteria
Legionella jordanis [LBAX]
70275
70349
+
Gln
TTG
[ENA]
¡û
>W1610583890
LBHK01000009
Gammaproteobacteria
Legionella feeleii [LBHK]
55993
56067
+
Gln
TTG
[ENA]
¡û
>W1610777573
LNXV01000036
Gammaproteobacteria
Legionella brunensis [LNXV]
76973
77047
+
Gln
TTG
[ENA]
¡û
>W1610777686
LNXY01000020
Gammaproteobacteria
Legionella drozanskii LLAP-1 [LNXY]
744992
745066
+
Gln
TTG
[ENA]
¡û
>W1610777795
LNYB01000018
Gammaproteobacteria
Legionella feeleii [LNYB]
56030
56104
+
Gln
TTG
[ENA]
¡û
>W1610777852
LNYC01000031
Gammaproteobacteria
Legionella geestiana [LNYC]
29811
29885
+
Gln
TTG
[ENA]
¡û
>W1610777958
LNYF01000012
Gammaproteobacteria
Legionella hackeliae [LNYF]
306981
307055
+
Gln
TTG
[ENA]
¡û
>W1610778004
LNYG01000013
Gammaproteobacteria
Legionella jamestowniensis [LNYG]
821180
821254
+
Gln
TTG
[ENA]
¡û
>W1610778086
LNYI01000028
Gammaproteobacteria
Legionella lansingensis [LNYI]
226430
226504
+
Gln
TTG
[ENA]
¡û
>W1610778129
LNYJ01000011
Gammaproteobacteria
Legionella jordanis [LNYJ]
2378740
2378666
-
Gln
TTG
[ENA]
¡û
>W1610778160
LNYK01000002
Gammaproteobacteria
Legionella londiniensis [LNYK]
10496
10570
+
Gln
TTG
[ENA]
¡û
>W1610778339
LNYO01000024
Gammaproteobacteria
Legionella nautarum [LNYO]
554267
554193
-
Gln
TTG
[ENA]
¡û
>W1611017192
LYOZ01000018
Gammaproteobacteria
Legionella jamestowniensis [LYOZ]
44708
44634
-
Gln
TTG
[ENA]
¡û
>W1710568971
FOTZ01000007
Gammaproteobacteria
Legionella jamestowniensis DSM 19215 [FOTZ]
44763
44689
-
Gln
TTG
[ENA]
¡û
>W1710699154
LBAX01000010
Gammaproteobacteria
Legionella jordanis [LBAX]
70275
70349
+
Gln
TTG
[ENA]
¡û
>W1710703038
LBHK01000009
Gammaproteobacteria
Legionella feeleii [LBHK]
55993
56067
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK