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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655187 (113 seq.)
>W1710879581
LMRU01000005
Bacillota
Bacillus sp. Leaf406 [LMRU]
1807119
1807045
-
Asn
GTT
[ENA]
¡û
>W1711009923
LQQY01000011
Bacillota
Rossellomorea marisflavi [LQQY]
139160
139086
-
Asn
GTT
[ENA]
¡û
>W1711009962
LQQY01000046
Bacillota
Rossellomorea marisflavi [LQQY]
247
321
+
Asn
GTT
[ENA]
¡û
>W1711020578
LQYR01000013
Bacillota
Bacillus atrophaeus vallismortis [LQYR]
110918
110844
-
Asn
GTT
[ENA]
¡û
>W1711064867
LSBB01000003
Bacillota
Bacillus atrophaeus [LSBB]
136871
136945
+
Asn
GTT
[ENA]
¡û
>W1711064895
LSBB01000005
Bacillota
Bacillus atrophaeus [LSBB]
60094
60020
-
Asn
GTT
[ENA]
¡û
>W1711720316
MTIS01000003
Bacillota
Litchfieldia alkalitelluris [MTIS]
81240
81166
-
Asn
GTT
[ENA]
¡û
>W1711720325
MTIS01000003
Bacillota
Litchfieldia alkalitelluris [MTIS]
2151
2077
-
Asn
GTT
[ENA]
¡û
>W1711720356
MTIS01000004
Bacillota
Litchfieldia alkalitelluris [MTIS]
727994
728068
+
Asn
GTT
[ENA]
¡û
>W1711720366
MTIS01000005
Bacillota
Litchfieldia alkalitelluris [MTIS]
1234538
1234612
+
Asn
GTT
[ENA]
¡û
>W1711720367
MTIS01000005
Bacillota
Litchfieldia alkalitelluris [MTIS]
1239740
1239814
+
Asn
GTT
[ENA]
¡û
>W1711720402
MTIS01000007
Bacillota
Litchfieldia alkalitelluris [MTIS]
344656
344582
-
Asn
GTT
[ENA]
¡û
>C171119956
CP021500
Bacillota
Bacillus atrophaeus SRCM101359 [CP021500]
538473
538547
+
Asn
GTT
-
¡û
>C171120010
CP021500
Bacillota
Bacillus atrophaeus SRCM101359 [CP021500]
3106025
3105951
-
Asn
GTT
-
¡û
>W131110037
APIW01000005
Bacillota
Bacillus atrophaeus UCMB-5137 [APIW]
962
1036
+
Asn
GTT
[ENA]
¡û
>W131110072
APIW01000019
Bacillota
Bacillus atrophaeus UCMB-5137 [APIW]
449229
449155
-
Asn
GTT
[ENA]
¡û
>W131226866
AUER01000034
Bacillota
Bacillus sp. URHB0009 [AUER]
168
94
-
Asn
GTT
[ENA]
¡û
>W131236719
AUMP01000003
Bacillota
Fictibacillus gelatini DSM 15865 [AUMP]
5735
5809
+
Asn
GTT
[ENA]
¡û
>W131236727
AUMP01000004
Bacillota
Fictibacillus gelatini DSM 15865 [AUMP]
187437
187363
-
Asn
GTT
[ENA]
¡û
>W131236743
AUMP01000006
Bacillota
Fictibacillus gelatini DSM 15865 [AUMP]
40328
40254
-
Asn
GTT
[ENA]
¡û
>W131236773
AUMP01000006
Bacillota
Fictibacillus gelatini DSM 15865 [AUMP]
36499
36425
-
Asn
GTT
[ENA]
¡û
>W131236780
AUMP01000033
Bacillota
Fictibacillus gelatini DSM 15865 [AUMP]
132
206
+
Asn
GTT
[ENA]
¡û
>WENV180101420
OAOU01059438
[OAOU] marine metagenome; ENVO:00002010 SEAWATER
56
130
+
Asn
GTT
[ENA]
¢þ
>W141233633
BAWA01000005
Bacillota
Bacillus sp. JCM 19045 [BAWA]
33317
33391
+
Asn
GTT
[ENA]
¡û
>C181070070
CP022653
Bacillota
Bacillus atrophaeus GQJK17 [CP022653]
538546
538620
+
Asn
GTT
-
¡û
>C181070124
CP022653
Bacillota
Bacillus atrophaeus GQJK17 [CP022653]
3266991
3266917
-
Asn
GTT
-
¡û
>C181093598
CP024051
Bacillota
Bacillus atrophaeus BA59 [CP024051]
1381891
1381965
+
Asn
GTT
-
¡û
>C181093603
CP024051
Bacillota
Bacillus atrophaeus BA59 [CP024051]
4046589
4046515
-
Asn
GTT
-
¡û
>W141713808
JMTJ01000001
Bacillota
Bacillus atrophaeus subsp. niger [JMTJ]
79254
79180
-
Asn
GTT
[ENA]
¡û
>W141713841
JMTJ01000003
Bacillota
Bacillus atrophaeus subsp. niger [JMTJ]
1060026
1060100
+
Asn
GTT
[ENA]
¡û
>W1910437654
FVYY01000006
Bacillota
Rossellomorea marisflavi Marseille-P794 [FVYY]
413
487
+
Asn
GTT
[ENA]
¡û
>W1910437683
FVYY01000009
Bacillota
Rossellomorea marisflavi Marseille-P794 [FVYY]
512259
512333
+
Asn
GTT
[ENA]
¡û
>W1911114402
NOII01000002
Bacillota
Fictibacillus aquaticus GDSW-R2A3 [NOII]
113148
113074
-
Asn
GTT
[ENA]
¡û
>W1911114415
NOII01000010
Bacillota
Fictibacillus aquaticus GDSW-R2A3 [NOII]
116105
116031
-
Asn
GTT
[ENA]
¡û
>W1911114432
NOII01000021
Bacillota
Fictibacillus aquaticus GDSW-R2A3 [NOII]
63937
63863
-
Asn
GTT
[ENA]
¡û
>W1911114440
NOII01000021
Bacillota
Fictibacillus aquaticus GDSW-R2A3 [NOII]
1375
1301
-
Asn
GTT
[ENA]
¡û
>W1911153265
NPIA01000001
Bacillota
Lottiidibacillus patelloidae SA5d-4 [NPIA]
352
426
+
Asn
GTT
[ENA]
¡û
>W1911153320
NPIA01000013
Bacillota
Lottiidibacillus patelloidae SA5d-4 [NPIA]
29130
29056
-
Asn
GTT
[ENA]
¡û
>W1911153330
NPIA01000013
Bacillota
Lottiidibacillus patelloidae SA5d-4 [NPIA]
1377
1303
-
Asn
GTT
[ENA]
¡û
>W1911770366
QXIR01000007
Bacillota
Bacillus salacetis SKP7-4 [QXIR]
1944
2018
+
Asn
GTT
[ENA]
¡û
>W1810361377
PVQM01000001
Bacillota
Bacillus atrophaeus GBSC56 [PVQM]
1634850
1634776
-
Asn
GTT
[ENA]
¡û
>W1810361409
PVQM01000004
Bacillota
Bacillus atrophaeus GBSC56 [PVQM]
108307
108233
-
Asn
GTT
[ENA]
¡û
>W1810361445
PVQN01000001
Bacillota
Bacillus atrophaeus NMTD54 [PVQN]
2032
2106
+
Asn
GTT
[ENA]
¡û
>W1810361459
PVQN01000004
Bacillota
Bacillus atrophaeus NMTD54 [PVQN]
371749
371823
+
Asn
GTT
[ENA]
¡û
>W1810361522
PVQO01000006
Bacillota
Bacillus atrophaeus LSSC3 [PVQO]
194505
194579
+
Asn
GTT
[ENA]
¡û
>W1810361557
PVQO01000010
Bacillota
Bacillus atrophaeus LSSC3 [PVQO]
1908
1982
+
Asn
GTT
[ENA]
¡û
>W1810366017
PVWA01000003
Bacillota
Bacillus atrophaeus CKL1 [PVWA]
1905
1979
+
Asn
GTT
[ENA]
¡û
>W1810366029
PVWA01000004
Bacillota
Bacillus atrophaeus CKL1 [PVWA]
92087
92013
-
Asn
GTT
[ENA]
¡û
>W1810366061
PVWB01000001
Bacillota
Bacillus atrophaeus TS1 [PVWB]
2031
2105
+
Asn
GTT
[ENA]
¡û
>W1810366100
PVWB01000004
Bacillota
Bacillus atrophaeus TS1 [PVWB]
91866
91792
-
Asn
GTT
[ENA]
¡û
>C151071945
CP010778
Bacillota
Bacillus atrophaeus [CP010778]
4095205
4095279
+
Asn
GTT
[Ensembl]
¡û
>C151071976
CP010778
Bacillota
Bacillus atrophaeus [CP010778]
2526400
2526326
-
Asn
GTT
[Ensembl]
¡û
>C11102246
CP002207
Bacillota
Bacillus atrophaeus 1942 [CP002207]
4164047
4164121
+
Asn
GTT
[Ensembl]
¡û
>C11102277
CP002207
Bacillota
Bacillus atrophaeus 1942 [CP002207]
2601041
2600967
-
Asn
GTT
[Ensembl]
¡û
>W1510619718
CUWS01000002
Bacillota
Bacillus atrophaeus 930029 [CUWS]
76
2
-
Asn
GTT
[ENA]
¡û
>W1510619779
CUWS01000179
Bacillota
Bacillus atrophaeus 930029 [CUWS]
5
79
+
Asn
GTT
[ENA]
¡û
>W1510619791
CUWS01000183
Bacillota
Bacillus atrophaeus 930029 [CUWS]
963
1037
+
Asn
GTT
[ENA]
¡û
>W11135910
AEFM01000005
Bacillota
Bacillus atrophaeus ATCC 9372-1 [AEFM]
1051
1125
+
Asn
GTT
[ENA]
¡û
>W11135913
AEFM01000006
Bacillota
Bacillus atrophaeus ATCC 9372-1 [AEFM]
32723
32797
+
Asn
GTT
[ENA]
¡û
>W11135961
AEFO01000004
Bacillota
Bacillus atrophaeus str. Dugway [AEFO]
133427
133501
+
Asn
GTT
[ENA]
¡û
>W11136024
AEFO01000030
Bacillota
Bacillus atrophaeus str. Dugway [AEFO]
186733
186659
-
Asn
GTT
[ENA]
¡û
>W11136040
AEFP01000001
Bacillota
Bacillus atrophaeus Detrick-1 [AEFP]
32739
32813
+
Asn
GTT
[ENA]
¡û
>W11136078
AEFP01000009
Bacillota
Bacillus atrophaeus Detrick-1 [AEFP]
1051
1125
+
Asn
GTT
[ENA]
¡û
>W11136119
AEFQ01000020
Bacillota
Bacillus atrophaeus Detrick-2 [AEFQ]
32719
32793
+
Asn
GTT
[ENA]
¡û
>W11136154
AEFQ01000027
Bacillota
Bacillus atrophaeus Detrick-2 [AEFQ]
885
959
+
Asn
GTT
[ENA]
¡û
>W11136168
AEFR01000002
Bacillota
Bacillus atrophaeus Detrick-3 [AEFR]
79274
79200
-
Asn
GTT
[ENA]
¡û
>W11136223
AEFR01000021
Bacillota
Bacillus atrophaeus Detrick-3 [AEFR]
186735
186661
-
Asn
GTT
[ENA]
¡û
>W11136262
AEFS01000005
Bacillota
Bacillus atrophaeus 1013-1 [AEFS]
1221
1295
+
Asn
GTT
[ENA]
¡û
>W11136275
AEFS01000015
Bacillota
Bacillus atrophaeus 1013-1 [AEFS]
133366
133440
+
Asn
GTT
[ENA]
¡û
>W11136323
AEFT01000016
Bacillota
Bacillus atrophaeus 1013-2 [AEFT]
32700
32774
+
Asn
GTT
[ENA]
¡û
>W11136334
AEFT01000018
Bacillota
Bacillus atrophaeus 1013-2 [AEFT]
304
378
+
Asn
GTT
[ENA]
¡û
>W11136362
AEFU01000023
Bacillota
Bacillus atrophaeus ATCC 9372-2 [AEFU]
79362
79288
-
Asn
GTT
[ENA]
¡û
>W11136377
AEFU01000028
Bacillota
Bacillus atrophaeus ATCC 9372-2 [AEFU]
302037
301963
-
Asn
GTT
[ENA]
¡û
>W11136422
AEFV01000018
Bacillota
Bacillus atrophaeus ATCC 49822-1 [AEFV]
79351
79277
-
Asn
GTT
[ENA]
¡û
>W11136455
AEFV01000024
Bacillota
Bacillus atrophaeus ATCC 49822-1 [AEFV]
1677
1751
+
Asn
GTT
[ENA]
¡û
>W11136501
AEFW01000020
Bacillota
Bacillus atrophaeus ATCC 49822-2 [AEFW]
134108
134182
+
Asn
GTT
[ENA]
¡û
>W11136526
AEFW01000027
Bacillota
Bacillus atrophaeus ATCC 49822-2 [AEFW]
186741
186667
-
Asn
GTT
[ENA]
¡û
>W11136551
AEFX01000008
Bacillota
Bacillus atrophaeus BACI051-E [AEFX]
79375
79301
-
Asn
GTT
[ENA]
¡û
>W11136572
AEFX01000009
Bacillota
Bacillus atrophaeus BACI051-E [AEFX]
186719
186645
-
Asn
GTT
[ENA]
¡û
>W11136653
AEFY01000058
Bacillota
Bacillus atrophaeus BACI051-N [AEFY]
74764
74690
-
Asn
GTT
[ENA]
¡û
>W11136656
AEFY01000061
Bacillota
Bacillus atrophaeus BACI051-N [AEFY]
32648
32722
+
Asn
GTT
[ENA]
¡û
>W1511642828
LDWH01000002
Bacillota
Rossellomorea marisflavi LK16 [LDWH]
684235
684161
-
Asn
GTT
[ENA]
¡û
>W1511642878
LDWH01000012
Bacillota
Rossellomorea marisflavi LK16 [LDWH]
138863
138789
-
Asn
GTT
[ENA]
¡û
>W1511643032
LDWJ01000007
Bacillota
Rossellomorea marisflavi LK19 [LDWJ]
373
447
+
Asn
GTT
[ENA]
¡û
>W1511643090
LDWJ01000025
Bacillota
Rossellomorea marisflavi LK19 [LDWJ]
50724
50650
-
Asn
GTT
[ENA]
¡û
>W1511643454
LDWO01000011
Bacillota
Rossellomorea marisflavi LK26 [LDWO]
217
291
+
Asn
GTT
[ENA]
¡û
>W1511643462
LDWO01000014
Bacillota
Rossellomorea marisflavi LK26 [LDWO]
346
420
+
Asn
GTT
[ENA]
¡û
>W1511706376
LGUE01000007
Bacillota
Rossellomorea marisflavi JCM 11544 [LGUE]
934
860
-
Asn
GTT
[ENA]
¡û
>C161017763
CP007640
Bacillota
Bacillus atrophaeus subsp. globigii BSS [CP007640]
4095203
4095277
+
Asn
GTT
[Ensembl]
¡û
>C161017794
CP007640
Bacillota
Bacillus atrophaeus subsp. globigii BSS [CP007640]
2526400
2526326
-
Asn
GTT
[Ensembl]
¡û
>C161037413
CP011802
Bacillota
Bacillus atrophaeus UCMB-5137 [CP011802]
2518236
2518310
+
Asn
GTT
-
¡û
>C161037447
CP011802
Bacillota
Bacillus atrophaeus UCMB-5137 [CP011802]
294649
294575
-
Asn
GTT
-
¡û
>C161078153
CP014840
Bacillota
Bacillus subtilis subsp. globigii ATCC 49760 [CP014840]
878035
878109
+
Asn
GTT
-
¡û
>C161078187
CP014840
Bacillota
Bacillus subtilis subsp. globigii ATCC 49760 [CP014840]
3484362
3484288
-
Asn
GTT
-
¡û
>C161086761
CP015378
Bacillota
Fictibacillus phosphorivorans G25-29 [CP015378]
151772
151846
+
Asn
GTT
[Ensembl]
¡û
>C161102893
CP016761
Bacillota
Fictibacillus arsenicus G25-54 [CP016761]
150948
151022
+
Asn
GTT
[Ensembl]
¡û
>W1610042234
BAXP01000012
Bacillota
Bacillus sp. JCM 19035 [BAXP]
79635
79709
+
Asn
GTT
[ENA]
¡û
>W1610073309
BCVV01000008
Bacillota
Bacillus atrophaeus NBRC 15539 [BCVV]
75883
75809
-
Asn
GTT
[ENA]
¡û
>W1610073333
BCVV01000017
Bacillota
Bacillus atrophaeus NBRC 15539 [BCVV]
60074
60000
-
Asn
GTT
[ENA]
¡û
>W1610081165
BDDH01000001
Bacillota
Bacillus atrophaeus [BDDH]
1533
1607
+
Asn
GTT
[ENA]
¡û
>W1610081202
BDDH01000005
Bacillota
Bacillus atrophaeus [BDDH]
375725
375799
+
Asn
GTT
[ENA]
¡û
>W1610586215
LDFV01000006
Bacillota
Fictibacillus arsenicus G25-54 [LDFV]
2002
2076
+
Asn
GTT
[ENA]
¡û
>W1610741927
LMRU01000005
Bacillota
Bacillus sp. Leaf406 [LMRU]
1807119
1807045
-
Asn
GTT
[ENA]
¡û
>W1610858443
LQQY01000011
Bacillota
Rossellomorea marisflavi [LQQY]
139160
139086
-
Asn
GTT
[ENA]
¡û
>W1610858482
LQQY01000046
Bacillota
Rossellomorea marisflavi [LQQY]
247
321
+
Asn
GTT
[ENA]
¡û
>W1610868866
LQYR01000013
Bacillota
Bacillus atrophaeus vallismortis [LQYR]
110918
110844
-
Asn
GTT
[ENA]
¡û
>W1610905656
LSBB01000003
Bacillota
Bacillus atrophaeus [LSBB]
136871
136945
+
Asn
GTT
[ENA]
¡û
>W1610905684
LSBB01000005
Bacillota
Bacillus atrophaeus [LSBB]
60094
60020
-
Asn
GTT
[ENA]
¡û
>W1710039328
BAXP01000012
Bacillota
Bacillus sp. JCM 19035 [BAXP]
79635
79709
+
Asn
GTT
[ENA]
¡û
>W1710070427
BCVV01000008
Bacillota
Bacillus atrophaeus NBRC 15539 [BCVV]
75883
75809
-
Asn
GTT
[ENA]
¡û
>W1710070451
BCVV01000017
Bacillota
Bacillus atrophaeus NBRC 15539 [BCVV]
60074
60000
-
Asn
GTT
[ENA]
¡û
>W1710079816
BDDH01000001
Bacillota
Bacillus atrophaeus [BDDH]
1533
1607
+
Asn
GTT
[ENA]
¡û
>W1710079853
BDDH01000005
Bacillota
Bacillus atrophaeus [BDDH]
375725
375799
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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