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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655196 (35 seq.)
>W1710943764
LOPZ01000035
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
335702
335776
+
Gly
TCC
[ENA]
¡û
>W1711029628
LRFI01000035
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
335702
335776
+
Gly
TCC
[ENA]
¡û
>W1711065270
LSBQ01000010
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
473
399
-
Gly
TCC
[ENA]
¡û
>W1711356895
MDGT01000003
Gammaproteobacteria
Idiomarina sp. MD25a [MDGT]
262811
262885
+
Gly
TCC
[ENA]
¡û
>W131239224
BANL01000009
Gammaproteobacteria
Idiomarina sp. 28-8 [BANL]
634
560
-
Gly
TCC
[ENA]
¡û
>C171118689
CP021425
Gammaproteobacteria
Oleiphilus messinensis ME102 [CP021425]
729333
729407
+
Gly
TCC
-
¡û
>C011009
AE017340
Gammaproteobacteria
Idiomarina loihiensis L2TR [AE017340]
348329
348403
+
Gly
TCC
[Ensembl]
¡û
>WENV170278271
CERQ01074161
[CERQ] marine metagenome genome assembly TARA_065_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
129
55
-
Gly
TCC
[ENA]
¢þ
>WENV170703517
LKMJ01013044
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6818
6892
+
Gly
TCC
[ENA]
¢þ
>WENV170703605
LKMJ01014454
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
346
272
-
Gly
TCC
[ENA]
¢þ
>WENV170880934
MDTC01122594
[MDTC] marine metagenome; seawater
9103
9177
+
Gly
TCC
[ENA]
¢þ
>C181059189
CP022133
Gammaproteobacteria
Idiomarina piscisalsi 10PY1A [CP022133]
2306027
2305953
-
Gly
TCC
-
¡û
>C181110267
CP025000
Gammaproteobacteria
Idiomarina sp. X4 [CP025000]
842612
842538
-
Gly
TCC
-
¡û
>C181146684
CP027188
Gammaproteobacteria
Idiomarina sp. OT37-5b [CP027188]
252005
252079
+
Gly
TCC
-
¡û
>W1910371581
FUFP01000015
Gammaproteobacteria
Halomonas utahensis P-halo [FUFP]
231307
231233
-
Gly
TCC
[ENA]
¡û
>W1911245555
NSKD01000016
Gammaproteobacteria
Halovibrio salipaludis YL5-2 [NSKD]
6470
6544
+
Gly
TCC
[ENA]
¡û
>W1911585184
PIPS01000001
Gammaproteobacteria
Idiomarina aquatica SN-14 [PIPS]
1157520
1157446
-
Gly
TCC
[ENA]
¡û
>W1911585362
PIPV01000008
Gammaproteobacteria
Idiomarina fontislapidosi F23 [PIPV]
96654
96728
+
Gly
TCC
[ENA]
¡û
>W1911585618
PIQA01000016
Gammaproteobacteria
Idiomarina piscisalsi TPS4-2 [PIQA]
29185
29259
+
Gly
TCC
[ENA]
¡û
>W1911585697
PIQC01000004
Gammaproteobacteria
Idiomarina ramblicola R22 [PIQC]
277
203
-
Gly
TCC
[ENA]
¡û
>W1911585857
PIQF01000002
Gammaproteobacteria
Idiomarina seosinensis CL-SP19 [PIQF]
261859
261785
-
Gly
TCC
[ENA]
¡û
>W1810609607
QGUA01000011
Gammaproteobacteria
Idiomarina loihiensis H2.2 [QGUA]
340
266
-
Gly
TCC
[ENA]
¡û
>W1810671403
QJST01000009
Gammaproteobacteria
Idiomarina fontislapidosi CECT 5859 [QJST]
96622
96696
+
Gly
TCC
[ENA]
¡û
>W1810785252
QRBK01000006
Gammaproteobacteria
Idiomarina abyssalis 017G.2 [QRBK]
28628
28702
+
Gly
TCC
[ENA]
¡û
>C131016257
CP005964
Gammaproteobacteria
Idiomarina loihiensis GSL 199 [CP005964]
348444
348518
+
Gly
TCC
[Ensembl]
¡û
>W1610616491
LGOW01000009
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
707
633
-
Gly
TCC
[ENA]
¡û
>W1610621744
LHSG01000003
Gammaproteobacteria
Idiomarina zobellii [LHSG]
130709
130635
-
Gly
TCC
[ENA]
¡û
>W1610800064
LOPZ01000035
Gammaproteobacteria
Idiomarina sp. H105 [LOPZ]
335702
335776
+
Gly
TCC
[ENA]
¡û
>W1610877896
LRFI01000035
Gammaproteobacteria
Idiomarina sp. WRN-38 [LRFI]
335702
335776
+
Gly
TCC
[ENA]
¡û
>W1610906059
LSBQ01000010
Gammaproteobacteria
Idiomarina sp. T82-3 [LSBQ]
473
399
-
Gly
TCC
[ENA]
¡û
>WENV079064
AASZ01000037
Olavius algarvensis microbiome from Mediterranean sea
1226
1300
+
Gly
TCC
[ENA]
>W1710515750
FNCB01000003
Gammaproteobacteria
Idiomarina zobellii [FNCB]
130676
130602
-
Gly
TCC
[ENA]
¡û
>W1710577954
FPBE01000002
Gammaproteobacteria
Idiomarina abyssalis [FPBE]
465
391
-
Gly
TCC
[ENA]
¡û
>W1710741626
LGOW01000009
Gammaproteobacteria
Idiomarina abyssalis [LGOW]
707
633
-
Gly
TCC
[ENA]
¡û
>W1710752617
LHSG01000003
Gammaproteobacteria
Idiomarina zobellii [LHSG]
130709
130635
-
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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