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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655230 (147 seq.)
>W1710834833
LLJH01000007
Actinomycetota
Cutibacterium avidum [LLJH]
227544
227618
+
Met
CAT
[ENA]
¡û
>W1710834889
LLJI01000004
Actinomycetota
Cutibacterium avidum [LLJI]
226692
226766
+
Met
CAT
[ENA]
¡û
>W1710834926
LLJJ01000007
Actinomycetota
Cutibacterium avidum [LLJJ]
227545
227619
+
Met
CAT
[ENA]
¡û
>W1711055740
LRVD01000020
Actinomycetota
Cutibacterium avidum [LRVD]
42786
42712
-
Met
CAT
[ENA]
¡û
>W1711256140
LYSN01000004
Actinomycetota
Cutibacterium avidum [LYSN]
61237
61163
-
Met
CAT
[ENA]
¡û
>W131206173
ATFM01000003
Actinomycetota
Propionibacterium sp. HGH0353 [ATFM]
64242
64168
-
Met
CAT
[ENA]
¡û
>W131224904
AUDD01000005
Actinomycetota
Acidipropionibacterium jensenii DSM 20535 [AUDD]
120766
120692
-
Met
CAT
[ENA]
¡û
>W131230850
AUHZ01000002
Actinomycetota
Acidipropionibacterium thoenii DSM 20276 [AUHZ]
64373
64447
+
Met
CAT
[ENA]
¡û
>C171054407
CP016954
Actinomycetota
Cutibacterium avidum DPC 6544 [CP016954]
2188700
2188774
+
Met
CAT
-
¡û
>WENV180165460
OAVK01002029
[OAVK] human gut metagenome; faeces
2911
2837
-
Met
CAT
[ENA]
¢þ
>WENV180190676
OAXA01000215
[OAXA] human gut metagenome; faeces
1894
1820
-
Met
CAT
[ENA]
¢þ
>WENV180226704
OBBS01000064
[OBBS] human gut metagenome; Infant 2 DOL 17 gut
57741
57667
-
Met
CAT
[ENA]
¢þ
>WENV180226938
OBBT01000039
[OBBT] human gut metagenome; Infant 2 DOL 16 gut
125706
125632
-
Met
CAT
[ENA]
¢þ
>WENV180227798
OBBV01000045
[OBBV] human gut metagenome; Infant 2 DOL 24 gut
15338
15412
+
Met
CAT
[ENA]
¢þ
>WENV180228079
OBBW01000038
[OBBW] human gut metagenome; Infant 2 DOL 28 gut
15338
15412
+
Met
CAT
[ENA]
¢þ
>WENV180230019
OBCK01000562
[OBCK] human gut metagenome; human gut
1181
1255
+
Met
CAT
[ENA]
¢þ
>WENV180241281
OBDG01000011
[OBDG] human gut metagenome; human gut
21164
21238
+
Met
CAT
[ENA]
¢þ
>WENV180421000
OBVP01001587
[OBVP] human gut metagenome; faeces
1181
1255
+
Met
CAT
[ENA]
¢þ
>WENV180421529
OBVQ01004258
[OBVQ] human gut metagenome; faeces
224
298
+
Met
CAT
[ENA]
¢þ
>WENV180422246
OBVS01002358
[OBVS] human gut metagenome; faeces
386
460
+
Met
CAT
[ENA]
¢þ
>WENV180493757
OBZZ01000293
[OBZZ] human gut metagenome; faeces
9644
9570
-
Met
CAT
[ENA]
¢þ
>WENV180556134
OCJQ01001286
[OCJQ] human gut metagenome; Infant 2 DOL 15 gut
634
708
+
Met
CAT
[ENA]
¢þ
>WENV180556438
OCJS01000029
[OCJS] human gut metagenome; Infant 2 DOL 18 gut
15338
15412
+
Met
CAT
[ENA]
¢þ
>WENV180556690
OCJT01000029
[OCJT] human gut metagenome; Infant 2 DOL 19 gut
15338
15412
+
Met
CAT
[ENA]
¢þ
>WENV180557190
OCJV01000074
[OCJV] human gut metagenome; Infant 2 DOL 20 gut
15338
15412
+
Met
CAT
[ENA]
¢þ
>WENV180557435
OCJW01000047
[OCJW] human gut metagenome; Infant 2 DOL 21 gut
15338
15412
+
Met
CAT
[ENA]
¢þ
>WENV180557736
OCJX01000040
[OCJX] human gut metagenome; Infant 2 DOL 22 gut
15338
15412
+
Met
CAT
[ENA]
¢þ
>WENV180558865
OCKA01000052
[OCKA] human gut metagenome; Infant 2 DOL 25 gut
15338
15412
+
Met
CAT
[ENA]
¢þ
>WENV180559186
OCKB01005907
[OCKB] human gut metagenome; Infant 2 DOL 23 gut
15
89
+
Met
CAT
[ENA]
¢þ
>WENV180559343
OCKC01000045
[OCKC] human gut metagenome; Infant 2 DOL 26 gut
15338
15412
+
Met
CAT
[ENA]
¢þ
>WENV180559712
OCKD01000050
[OCKD] human gut metagenome; Infant 2 DOL 27 gut
15338
15412
+
Met
CAT
[ENA]
¢þ
>WENV180562037
OCLA01000017
[OCLA] human gut metagenome; human gut
13562
13636
+
Met
CAT
[ENA]
¢þ
>WENV180564472
OCLE01000011
[OCLE] human gut metagenome; human gut
13562
13636
+
Met
CAT
[ENA]
¢þ
>WENV180566370
OCLI01000753
[OCLI] human gut metagenome; human gut
1844
1770
-
Met
CAT
[ENA]
¢þ
>WENV180568707
OCLN01000166
[OCLN] human gut metagenome; human gut
5785
5859
+
Met
CAT
[ENA]
¢þ
>WENV180568876
OCLO01000194
[OCLO] human gut metagenome; human gut
1499
1425
-
Met
CAT
[ENA]
¢þ
>W141055834
AOSS01000343
Actinomycetota
Cutibacterium granulosum DSM 20700 [AOSS]
5890
5964
+
Met
CAT
[ENA]
¡û
>W141055838
AOST01000005
Actinomycetota
Cutibacterium granulosum TM11 [AOST]
15002
14928
-
Met
CAT
[ENA]
¡û
>W141056227
AOUA01000103
Actinomycetota
Cutibacterium avidum TM16 [AOUA]
6932
6858
-
Met
CAT
[ENA]
¡û
>WENV180623701
OCQF01000346
[OCQF] human gut metagenome; Infant 2 DOL 14 gut
2752
2826
+
Met
CAT
[ENA]
¢þ
>WENV180624979
OCQI01000016
[OCQI] human gut metagenome; human gut
87214
87140
-
Met
CAT
[ENA]
¢þ
>WENV180625081
OCQJ01000008
[OCQJ] human gut metagenome; human gut
21164
21238
+
Met
CAT
[ENA]
¢þ
>WENV180639257
OCRJ01000072
[OCRJ] human gut metagenome; human gut
5675
5601
-
Met
CAT
[ENA]
¢þ
>WENV180745644
ODHL01001402
[ODHL] human metagenome; G_DNA_L_Retroauricular crease
2944
2871
-
Met
CAT
[ENA]
¢þ
>WENV180765637
ODIC01017753
[ODIC] human metagenome; G_DNA_R_Retroauricular crease
628
701
+
Met
CAT
[ENA]
¢þ
>WENV181326529
OFLM01000006
[OFLM] metagenome; faeces
224516
224442
-
Met
CAT
[ENA]
¢þ
>WENV181327005
OFLO01000044
[OFLO] metagenome; faeces
12594
12668
+
Met
CAT
[ENA]
¢þ
>WENV181328565
OFLU01000101
[OFLU] metagenome; faeces
12682
12756
+
Met
CAT
[ENA]
¢þ
>WENV181328826
OFLV01000027
[OFLV] metagenome; faeces
117918
117844
-
Met
CAT
[ENA]
¢þ
>WENV181329234
OFLW01000085
[OFLW] metagenome; faeces
21205
21279
+
Met
CAT
[ENA]
¢þ
>W141155745
AXMF01000001
Actinomycetota
Propionibacterium sp. KPL2005 [AXMF]
562455
562381
-
Met
CAT
[ENA]
¡û
>W141155854
AXMH01000001
Actinomycetota
Propionibacterium sp. KPL2000 [AXMH]
262419
262345
-
Met
CAT
[ENA]
¡û
>W141155930
AXMJ01000001
Actinomycetota
Propionibacterium sp. KPL1852 [AXMJ]
273254
273180
-
Met
CAT
[ENA]
¡û
>W141156082
AXMM01000002
Actinomycetota
Propionibacterium sp. KPL1844 [AXMM]
76724
76650
-
Met
CAT
[ENA]
¡û
>W141156121
AXMN01000004
Actinomycetota
Propionibacterium sp. KPL1838 [AXMN]
90618
90692
+
Met
CAT
[ENA]
¡û
>WENV181804403
OGSF01000405
[OGSF] human gut metagenome; fecal sample 3 from infant 5
10859
10933
+
Met
CAT
[ENA]
¢þ
>WENV181806394
OGSK01003550
[OGSK] human gut metagenome; fecal sample 2 from infant 5
1028
954
-
Met
CAT
[ENA]
¢þ
>WENV181806660
OGSL01000462
[OGSL] human gut metagenome; fecal sample 6 from infant 5
2706
2632
-
Met
CAT
[ENA]
¢þ
>WENV181814227
OGTF01001168
[OGTF] human gut metagenome; fecal sample 5 from infant 5
478
405
-
Met
CAT
[ENA]
¢þ
>WENV181814379
OGTG01000070
[OGTG] human gut metagenome; fecal sample 1 from infant 4
67475
67401
-
Met
CAT
[ENA]
¢þ
>WENV181818505
OGTS01006093
[OGTS] human gut metagenome; fecal sample 4 from infant 4
325
399
+
Met
CAT
[ENA]
¢þ
>WENV181821419
OGUE01002753
[OGUE] human gut metagenome; fecal sample 1 from infant 5
655
729
+
Met
CAT
[ENA]
¢þ
>WENV182635969
OJKZ01000057
[OJKZ] metagenome; surface
21069
20996
-
Met
CAT
[ENA]
¢þ
>WENV182640091
OJLB01000223
[OJLB] metagenome; surface
14764
14837
+
Met
CAT
[ENA]
¢þ
>WENV182643056
OJLS01000309
[OJLS] metagenome; surface
2829
2756
-
Met
CAT
[ENA]
¢þ
>WENV182643563
OJLW01000075
[OJLW] metagenome; surface
12837
12764
-
Met
CAT
[ENA]
¢þ
>WENV182644604
OJLY01000040
[OJLY] metagenome; surface
60177
60250
+
Met
CAT
[ENA]
¢þ
>WENV182645746
OJLZ01001696
[OJLZ] metagenome; surface
975
902
-
Met
CAT
[ENA]
¢þ
>WENV182799928
OJTY01000011
[OJTY] human gut metagenome; human gut
12665
12738
+
Met
CAT
[ENA]
¢þ
>WENV182800741
OJUF01001637
[OJUF] human gut metagenome; human gut
1756
1683
-
Met
CAT
[ENA]
¢þ
>WENV182804175
OJUT01000002
[OJUT] human gut metagenome; human gut
21183
21257
+
Met
CAT
[ENA]
¢þ
>WENV182804561
OJUV01001047
[OJUV] human gut metagenome; human gut
1029
1102
+
Met
CAT
[ENA]
¢þ
>WENV182804841
OJUX01002537
[OJUX] human gut metagenome; human gut
56
130
+
Met
CAT
[ENA]
¢þ
>WENV182806804
OJVS01000155
[OJVS] human gut metagenome; human gut
6815
6741
-
Met
CAT
[ENA]
¢þ
>WENV182807381
OJVW01000168
[OJVW] human gut metagenome; human gut
1013
939
-
Met
CAT
[ENA]
¢þ
>WENV182807585
OJVY01000028
[OJVY] human gut metagenome; human gut
14435
14508
+
Met
CAT
[ENA]
¢þ
>WENV182809088
OJWM01001112
[OJWM] human gut metagenome; human gut
662
735
+
Met
CAT
[ENA]
¢þ
>WENV182809677
OJWS01000027
[OJWS] human gut metagenome; human gut
63027
62953
-
Met
CAT
[ENA]
¢þ
>WENV182812588
OJXT01000080
[OJXT] human gut metagenome; human gut
12660
12734
+
Met
CAT
[ENA]
¢þ
>WENV182813676
OJYF01000989
[OJYF] human gut metagenome; human gut
1193
1267
+
Met
CAT
[ENA]
¢þ
>WENV182814169
OJYH01000043
[OJYH] human gut metagenome; human gut
100962
101036
+
Met
CAT
[ENA]
¢þ
>WENV182814997
OJYO01000184
[OJYO] human gut metagenome; human gut
4440
4366
-
Met
CAT
[ENA]
¢þ
>WENV182815313
OJYQ01000534
[OJYQ] human gut metagenome; human gut
2026
2100
+
Met
CAT
[ENA]
¢þ
>WENV182815494
OJYR01000159
[OJYR] human gut metagenome; human gut
18533
18459
-
Met
CAT
[ENA]
¢þ
>WENV182815840
OJYV01000002
[OJYV] human gut metagenome; human gut
21183
21257
+
Met
CAT
[ENA]
¢þ
>WENV182816412
OJZA01000408
[OJZA] human gut metagenome; human gut
4020
3947
-
Met
CAT
[ENA]
¢þ
>WENV182817727
OJZM01000365
[OJZM] human gut metagenome; human gut
21150
21224
+
Met
CAT
[ENA]
¢þ
>WENV182821393
OKAW01000468
[OKAW] human gut metagenome; human gut
2164
2238
+
Met
CAT
[ENA]
¢þ
>WENV182821722
OKBA01000256
[OKBA] human gut metagenome; human gut
1251
1177
-
Met
CAT
[ENA]
¢þ
>WENV182823188
OKBS01000243
[OKBS] human gut metagenome; human gut
14205
14132
-
Met
CAT
[ENA]
¢þ
>WENV182825895
OKCO01000024
[OKCO] human gut metagenome; human gut
21183
21257
+
Met
CAT
[ENA]
¢þ
>WENV182826479
OKCS01000006
[OKCS] human gut metagenome; human gut
14927
14853
-
Met
CAT
[ENA]
¢þ
>WENV182826728
OKCU01000090
[OKCU] human gut metagenome; human gut
12540
12614
+
Met
CAT
[ENA]
¢þ
>WENV182827032
OKCW01003942
[OKCW] human gut metagenome; human gut
191
117
-
Met
CAT
[ENA]
¢þ
>WENV182827407
OKCZ01000044
[OKCZ] human gut metagenome; human gut
12660
12734
+
Met
CAT
[ENA]
¢þ
>WENV182830456
OKDZ01000023
[OKDZ] human gut metagenome; human gut
55867
55793
-
Met
CAT
[ENA]
¢þ
>WENV182831992
OKEJ01000021
[OKEJ] human gut metagenome; human gut
67412
67338
-
Met
CAT
[ENA]
¢þ
>WENV182835552
OKFO01000102
[OKFO] human gut metagenome; human gut
3636
3563
-
Met
CAT
[ENA]
¢þ
>WENV182837404
OKGH01000005
[OKGH] human gut metagenome; human gut
116943
117016
+
Met
CAT
[ENA]
¢þ
>WENV182840950
OKHP01000165
[OKHP] human gut metagenome; human gut
12660
12734
+
Met
CAT
[ENA]
¢þ
>WENV182841420
OKHV01000071
[OKHV] human gut metagenome; human gut
12406
12480
+
Met
CAT
[ENA]
¢þ
>WENV182842606
OKIF01000124
[OKIF] human gut metagenome; human gut
24405
24331
-
Met
CAT
[ENA]
¢þ
>WENV182845574
OKJE01000075
[OKJE] human gut metagenome; human gut
4021
3949
-
Met
CAT
[ENA]
¢þ
>WENV182847805
OKKD01001431
[OKKD] human gut metagenome; human gut
1603
1530
-
Met
CAT
[ENA]
¢þ
>WENV182849459
OKKR01000294
[OKKR] human gut metagenome; human gut
476
403
-
Met
CAT
[ENA]
¢þ
>WENV182849698
OKKT01000682
[OKKT] human gut metagenome; human gut
1444
1371
-
Met
CAT
[ENA]
¢þ
>WENV182851197
OKLL01000016
[OKLL] human gut metagenome; human gut
69023
68949
-
Met
CAT
[ENA]
¢þ
>WENV182851684
OKLR01000038
[OKLR] human gut metagenome; human gut
43757
43684
-
Met
CAT
[ENA]
¢þ
>WENV182852168
OKLW01000060
[OKLW] human gut metagenome; human gut
58624
58697
+
Met
CAT
[ENA]
¢þ
>WENV182852466
OKLY01000329
[OKLY] human gut metagenome; human gut
5268
5341
+
Met
CAT
[ENA]
¢þ
>WENV182853369
OKMK01000223
[OKMK] human gut metagenome; human gut
12540
12614
+
Met
CAT
[ENA]
¢þ
>WENV182857502
OKNX01003711
[OKNX] human gut metagenome; human gut
684
610
-
Met
CAT
[ENA]
¢þ
>WENV182858103
OKOC01000046
[OKOC] human gut metagenome; human gut
38564
38490
-
Met
CAT
[ENA]
¢þ
>WENV182858416
OKOE01000018
[OKOE] human gut metagenome; human gut
75117
75044
-
Met
CAT
[ENA]
¢þ
>WENV182858687
OKOG01000002
[OKOG] human gut metagenome; human gut
25663
25590
-
Met
CAT
[ENA]
¢þ
>WENV182858966
OKOI01005307
[OKOI] human gut metagenome; human gut
164
238
+
Met
CAT
[ENA]
¢þ
>WENV182860042
OKOR01000024
[OKOR] human gut metagenome; human gut
21183
21257
+
Met
CAT
[ENA]
¢þ
>WENV182860569
OKOX01000017
[OKOX] human gut metagenome; human gut
43358
43284
-
Met
CAT
[ENA]
¢þ
>WENV182861336
OKPE01000094
[OKPE] human gut metagenome; human gut
14395
14321
-
Met
CAT
[ENA]
¢þ
>WENV182863265
OKPS01000040
[OKPS] human gut metagenome; human gut
37325
37252
-
Met
CAT
[ENA]
¢þ
>WENV182864563
OKQD01000931
[OKQD] human gut metagenome; human gut
1445
1519
+
Met
CAT
[ENA]
¢þ
>WENV182864824
OKQE01004999
[OKQE] human gut metagenome; human gut
150
76
-
Met
CAT
[ENA]
¢þ
>WENV182941348
OKVG01001264
[OKVG] human gut metagenome; human gut
6352
6426
+
Met
CAT
[ENA]
¢þ
>WENV182944010
OKVI01002159
[OKVI] human gut metagenome; human gut
2315
2389
+
Met
CAT
[ENA]
¢þ
>WENV182960829
OKWK01000018
[OKWK] human gut metagenome; stool
280809
280735
-
Met
CAT
[ENA]
¢þ
>WENV183087404
OLJH01001449
[OLJH] human gut metagenome; human gut
1196
1270
+
Met
CAT
[ENA]
¢þ
>C181224560
LT906441
Actinomycetota
Cutibacterium granulosum NCTC11865 [LT906441]
65827
65754
-
Met
CAT
-
¡û
>C191036535
CP025570
Actinomycetota
Acidipropionibacterium jensenii JS280 [CP025570]
653076
653150
+
Met
CAT
-
¡û
>C191036604
CP025571
Actinomycetota
Acidipropionibacterium jensenii JS279 [CP025571]
2522914
2522840
-
Met
CAT
-
¡û
>C191180508
CP040635
Actinomycetota
Acidipropionibacterium jensenii FAM 19038 [CP040635]
1771609
1771683
+
Met
CAT
-
¡û
>C191211330
LR134473
Actinomycetota
Acidipropionibacterium jensenii NCTC13652 [LR134473]
2482370
2482444
+
Met
CAT
-
¡û
>W1910377720
FUKQ01000012
Actinomycetota
Luteococcus japonicus LSP_Lj1 [FUKQ]
3020
3094
+
Met
CAT
[ENA]
¡û
>W1910852659
NBIO01000001
Actinomycetota
Cutibacterium avidum CI878 [NBIO]
313212
313138
-
Met
CAT
[ENA]
¡û
>W1910852722
NBIP01000005
Actinomycetota
Cutibacterium avidum CI882 [NBIP]
259162
259088
-
Met
CAT
[ENA]
¡û
>W1910852778
NBIQ01000007
Actinomycetota
Cutibacterium avidum CI828 [NBIQ]
97446
97372
-
Met
CAT
[ENA]
¡û
>W1910852801
NBIR01000001
Actinomycetota
Cutibacterium avidum CI855 [NBIR]
259312
259238
-
Met
CAT
[ENA]
¡û
>W1910852869
NBIS01000006
Actinomycetota
Cutibacterium avidum CI853 [NBIS]
21607
21681
+
Met
CAT
[ENA]
¡û
>W1911137685
NOWI01000010
Actinomycetota
Cutibacterium avidum P16-029 [NOWI]
14803
14877
+
Met
CAT
[ENA]
¡û
>W11177555
AGBA01000005
Actinomycetota
Cutibacterium avidum ATCC 25577 [AGBA]
276114
276040
-
Met
CAT
[ENA]
¡û
>C131015004
CP005287
Actinomycetota
Cutibacterium avidum 44067 [CP005287]
331525
331599
+
Met
CAT
[Ensembl]
¡û
>W1610521545
JNBU01000001
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
237655
237729
+
Met
CAT
[ENA]
¡û
>W1610896786
LRVD01000020
Actinomycetota
Cutibacterium avidum [LRVD]
42786
42712
-
Met
CAT
[ENA]
¡û
>W1610958227
LVJK01000056
Actinomycetota
Cutibacterium avidum HL083PV1 [LVJK]
1816
1890
+
Met
CAT
[ENA]
¡û
>W1610958261
LVJL01000023
Actinomycetota
Cutibacterium avidum HL307PV1 [LVJL]
149169
149095
-
Met
CAT
[ENA]
¡û
>W1611019516
LYSN01000004
Actinomycetota
Cutibacterium avidum [LYSN]
61237
61163
-
Met
CAT
[ENA]
¡û
>WENV086048
BABE01001264
Gut microbiome of Human (healthy human sample In-E, Infant, Male)
672
748
+
Met
CAT
[ENA]
>W1710620830
JNBU01000001
Actinomycetota
Cutibacterium granulosum DSM 20700 [JNBU]
237655
237729
+
Met
CAT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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