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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655300 (104 seq.)
>W1710864993
LMGI01000001
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
798355
798429
+
Asn
GTT
[ENA]
¡û
>W1710867411
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
421745
421671
-
Asn
GTT
[ENA]
¡û
>W1710912508
LNRR01000003
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
244459
244533
+
Asn
GTT
[ENA]
¡û
>W1710912577
LNRS01000006
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
204410
204336
-
Asn
GTT
[ENA]
¡û
>W1710912612
LNRT01000006
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
36832
36906
+
Asn
GTT
[ENA]
¡û
>W1710912647
LNRU01000003
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
291819
291893
+
Asn
GTT
[ENA]
¡û
>W1710912685
LNRV01000004
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
35946
36020
+
Asn
GTT
[ENA]
¡û
>W1710912738
LNRW01000005
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
36826
36900
+
Asn
GTT
[ENA]
¡û
>W1710912785
LNRX01000005
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
36843
36917
+
Asn
GTT
[ENA]
¡û
>W1710912817
LNRY01000001
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
193067
192993
-
Asn
GTT
[ENA]
¡û
>W1710912888
LNRZ01000005
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
158626
158552
-
Asn
GTT
[ENA]
¡û
>W1710912965
LNSB01000016
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
70573
70647
+
Asn
GTT
[ENA]
¡û
>W1710913023
LNSC01000039
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
13359
13433
+
Asn
GTT
[ENA]
¡û
>W1710913058
LNSD01000005
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
238152
238226
+
Asn
GTT
[ENA]
¡û
>W1710913093
LNSE01000003
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
175691
175765
+
Asn
GTT
[ENA]
¡û
>W1710913139
LNSF01000003
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
238152
238226
+
Asn
GTT
[ENA]
¡û
>W1710913184
LNSG01000003
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
238152
238226
+
Asn
GTT
[ENA]
¡û
>W1710913221
LNSH01000001
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
121322
121396
+
Asn
GTT
[ENA]
¡û
>W1710913271
LNSI01000002
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
175695
175769
+
Asn
GTT
[ENA]
¡û
>W1710913319
LNSJ01000003
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
35416
35490
+
Asn
GTT
[ENA]
¡û
>W1710913384
LNSK01000003
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
52937
52863
-
Asn
GTT
[ENA]
¡û
>W131100400
AOUN01000002
Alphaproteobacteria
Sphingopyxis sp. MC1 [AOUN]
219081
219155
+
Asn
GTT
[ENA]
¡û
>W1711127843
LURA01000039
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
7590
7516
-
Asn
GTT
[ENA]
¡û
>W1711127910
LURB01000117
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
85759
85685
-
Asn
GTT
[ENA]
¡û
>W1711127923
LURC01000385
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
345
271
-
Asn
GTT
[ENA]
¡û
>W1711127960
LURE01000031
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
65453
65379
-
Asn
GTT
[ENA]
¡û
>W1711127974
LURF01000080
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S34_B10 [LURF]
740
814
+
Asn
GTT
[ENA]
¡û
>W1711128005
LURG01000280
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S38_B16 [LURG]
1865
1791
-
Asn
GTT
[ENA]
¡û
>W1711128010
LURH01000001
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
133276
133350
+
Asn
GTT
[ENA]
¡û
>W1711128075
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
320951
320877
-
Asn
GTT
[ENA]
¡û
>W1711503952
MKUC01000026
Alphaproteobacteria
Sphingopyxis sp. 65-8 [MKUC]
16813
16887
+
Asn
GTT
[ENA]
¡û
>W1712105801
NISK01000001
Alphaproteobacteria
Sphingopyxis bauzanensis [NISK]
219483
219557
+
Asn
GTT
[ENA]
¡û
>C171128447
LT598653
Alphaproteobacteria
uncultured Sphingopyxis sp. [LT598653]
497138
497064
-
Asn
GTT
-
¡û
>WENV180297837
OBJA01097146
[OBJA] soil metagenome; sediment, water from around vicinity
156
82
-
Asn
GTT
[ENA]
¢þ
>WENV181166977
OEIU01005238
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2423
2349
-
Asn
GTT
[ENA]
¢þ
>WENV181402250
OFTY01000329
[OFTY] sludge metagenome; sludge
37720
37646
-
Asn
GTT
[ENA]
¢þ
>WENV170727392
LULE01000019
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
74255
74181
-
Asn
GTT
[ENA]
¢þ
>WENV170728838
LULF01001318
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
5139
5065
-
Asn
GTT
[ENA]
¢þ
>WENV170729749
LULG01000863
[LULG] marine metagenome; Red Sea water column Station 169 - depth 200m
1865
1791
-
Asn
GTT
[ENA]
¢þ
>WENV170731292
LULH01054335
[LULH] marine metagenome; Red Sea water column Station 169 - depth 100m
168
94
-
Asn
GTT
[ENA]
¢þ
>WENV170732184
LULI01020768
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
311
385
+
Asn
GTT
[ENA]
¢þ
>WENV170732571
LULJ01000128
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
30738
30664
-
Asn
GTT
[ENA]
¢þ
>WENV170734382
LULK01004858
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
740
814
+
Asn
GTT
[ENA]
¢þ
>WENV170735705
LULL01008601
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
829
903
+
Asn
GTT
[ENA]
¢þ
>WENV170736422
LULM01002890
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
1077
1151
+
Asn
GTT
[ENA]
¢þ
>WENV170737481
LULO01000243
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
48961
48887
-
Asn
GTT
[ENA]
¢þ
>WENV170738412
LULP01000145
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
65453
65379
-
Asn
GTT
[ENA]
¢þ
>WENV170739414
LULQ01001023
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
2802
2876
+
Asn
GTT
[ENA]
¢þ
>WENV170741465
LULS01038723
[LULS] marine metagenome; Red Sea water column Station 108 - depth 200m
206
280
+
Asn
GTT
[ENA]
¢þ
>WENV170742098
LULU01000925
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
345
271
-
Asn
GTT
[ENA]
¢þ
>WENV170742680
LULV01000139
[LULV] marine metagenome; Red Sea water column Station 108 - depth 25m
85759
85685
-
Asn
GTT
[ENA]
¢þ
>WENV170743593
LULW01000743
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
7590
7516
-
Asn
GTT
[ENA]
¢þ
>WENV170759268
LUMS01009167
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
906
980
+
Asn
GTT
[ENA]
¢þ
>WENV170759526
LUMT01000002
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
320951
320877
-
Asn
GTT
[ENA]
¢þ
>WENV170761365
LUMV01000060
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
8677
8603
-
Asn
GTT
[ENA]
¢þ
>WENV170762748
LUMW01034037
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
467
393
-
Asn
GTT
[ENA]
¢þ
>WENV170973634
MTKY01049147
[MTKY] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
6731
6657
-
Asn
GTT
[ENA]
¢þ
>C191000357
AP017603
Alphaproteobacteria
Sphingopyxis sp. EG6 [AP017603]
2574776
2574850
+
Asn
GTT
-
¡û
>C191163828
CP039250
Alphaproteobacteria
Sphingopyxis sp. PAMC25046 [CP039250]
1035324
1035250
-
Asn
GTT
-
¡û
>W1910501764
FYAT01000012
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
806044
806118
+
Asn
GTT
[ENA]
¡û
>W1911411572
NWUR01000011
Alphaproteobacteria
Sphingopyxis terrae DSM 24316 [NWUR]
210756
210682
-
Asn
GTT
[ENA]
¡û
>C151044385
CP009122
Alphaproteobacteria
Sphingopyxis fribergensis Kp5.2 [CP009122]
3354246
3354320
+
Asn
GTT
[Ensembl]
¡û
>W1510015784
BBRO01000001
Alphaproteobacteria
Sphingopyxis sp. C-1 [BBRO]
2419743
2419817
+
Asn
GTT
[ENA]
¡û
>W1511221156
JNFC01000010
Alphaproteobacteria
Sphingopyxis sp. LC363 [JNFC]
40406
40332
-
Asn
GTT
[ENA]
¡û
>W1511221212
JNFD01000030
Alphaproteobacteria
Sphingopyxis sp. LC81 [JNFD]
34619
34693
+
Asn
GTT
[ENA]
¡û
>W1511324658
JQFJ01000002
Alphaproteobacteria
Sphingopyxis sp. MWB1 [JQFJ]
1112337
1112411
+
Asn
GTT
[ENA]
¡û
>C161021394
CP009429
Alphaproteobacteria
Sphingopyxis macrogoltabida 203 [CP009429]
3668119
3668193
+
Asn
GTT
[Ensembl]
¡û
>C161043682
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
599040
598966
-
Asn
GTT
[Ensembl]
¡û
>C161055595
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
71019
71093
+
Asn
GTT
[Ensembl]
¡û
>C161055658
CP013344
Alphaproteobacteria
Sphingopyxis macrogoltabida 203N [CP013344]
3862938
3863012
+
Asn
GTT
-
¡û
>WENV056649
AACY023261413
Marine microbial communities from Global Ocean Sampling (GOS)
1125
1201
+
Asn
GTT
[ENA]
>W1610077681
BCZQ01000014
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
111295
111221
-
Asn
GTT
[ENA]
¡û
>W1610727339
LMGI01000001
Alphaproteobacteria
Sphingopyxis sp. Root154 [LMGI]
798355
798429
+
Asn
GTT
[ENA]
¡û
>W1610729757
LMIG01000003
Alphaproteobacteria
Sphingopyxis sp. Root214 [LMIG]
421745
421671
-
Asn
GTT
[ENA]
¡û
>W1610770867
LNRR01000003
Alphaproteobacteria
Sphingopyxis sp. H005 [LNRR]
244459
244533
+
Asn
GTT
[ENA]
¡û
>W1610770936
LNRS01000006
Alphaproteobacteria
Sphingopyxis sp. H012 [LNRS]
204410
204336
-
Asn
GTT
[ENA]
¡û
>W1610770971
LNRT01000006
Alphaproteobacteria
Sphingopyxis sp. H038 [LNRT]
36832
36906
+
Asn
GTT
[ENA]
¡û
>W1610771006
LNRU01000003
Alphaproteobacteria
Sphingopyxis sp. H053 [LNRU]
291819
291893
+
Asn
GTT
[ENA]
¡û
>W1610771044
LNRV01000004
Alphaproteobacteria
Sphingopyxis sp. H077 [LNRV]
35946
36020
+
Asn
GTT
[ENA]
¡û
>W1610771097
LNRW01000005
Alphaproteobacteria
Sphingopyxis sp. H080 [LNRW]
36826
36900
+
Asn
GTT
[ENA]
¡û
>W1610771144
LNRX01000005
Alphaproteobacteria
Sphingopyxis sp. H085 [LNRX]
36843
36917
+
Asn
GTT
[ENA]
¡û
>W1610771176
LNRY01000001
Alphaproteobacteria
Sphingopyxis sp. H093 [LNRY]
193067
192993
-
Asn
GTT
[ENA]
¡û
>W1610771247
LNRZ01000005
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
158626
158552
-
Asn
GTT
[ENA]
¡û
>W1610771324
LNSB01000016
Alphaproteobacteria
Sphingopyxis sp. HIX [LNSB]
70573
70647
+
Asn
GTT
[ENA]
¡û
>W1610771382
LNSC01000039
Alphaproteobacteria
Sphingopyxis sp. HXXIV [LNSC]
13359
13433
+
Asn
GTT
[ENA]
¡û
>W1610771417
LNSD01000005
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
238152
238226
+
Asn
GTT
[ENA]
¡û
>W1610771452
LNSE01000003
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
175691
175765
+
Asn
GTT
[ENA]
¡û
>W1610771498
LNSF01000003
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
238152
238226
+
Asn
GTT
[ENA]
¡û
>W1610771543
LNSG01000003
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
238152
238226
+
Asn
GTT
[ENA]
¡û
>W1610771580
LNSH01000001
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
121322
121396
+
Asn
GTT
[ENA]
¡û
>W1610771630
LNSI01000002
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
175695
175769
+
Asn
GTT
[ENA]
¡û
>W1610771678
LNSJ01000003
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
35416
35490
+
Asn
GTT
[ENA]
¡û
>W1610771743
LNSK01000003
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
52937
52863
-
Asn
GTT
[ENA]
¡û
>W1610938957
LURA01000039
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
7590
7516
-
Asn
GTT
[ENA]
¡û
>W1610939024
LURB01000117
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
85759
85685
-
Asn
GTT
[ENA]
¡û
>W1610939037
LURC01000385
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
345
271
-
Asn
GTT
[ENA]
¡û
>W1610939074
LURE01000031
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
65453
65379
-
Asn
GTT
[ENA]
¡û
>W1610939088
LURF01000080
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S34_B10 [LURF]
740
814
+
Asn
GTT
[ENA]
¡û
>W1610939119
LURG01000280
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S38_B16 [LURG]
1865
1791
-
Asn
GTT
[ENA]
¡û
>W1610939124
LURH01000001
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
133276
133350
+
Asn
GTT
[ENA]
¡û
>W1610939189
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
320951
320877
-
Asn
GTT
[ENA]
¡û
>W1710075319
BCZQ01000014
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
111295
111221
-
Asn
GTT
[ENA]
¡û
>W1710540021
FNWK01000001
Alphaproteobacteria
Sphingopyxis sp. YR583 [FNWK]
534727
534801
+
Asn
GTT
[ENA]
¡û
>W1710609437
FXWL01000002
Alphaproteobacteria
Sphingopyxis terrae ummariensis [FXWL]
215178
215252
+
Asn
GTT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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