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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655301 (63 seq.)
>W1710913059
LNSD01000005
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
150862
150788
-
Thr
GGT
[ENA]
¡û
>W1710913098
LNSE01000003
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
88401
88327
-
Thr
GGT
[ENA]
¡û
>W1710913144
LNSF01000003
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
150862
150788
-
Thr
GGT
[ENA]
¡û
>W1710913189
LNSG01000003
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
150862
150788
-
Thr
GGT
[ENA]
¡û
>W1710913224
LNSH01000001
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
34027
33953
-
Thr
GGT
[ENA]
¡û
>W1710913276
LNSI01000002
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
88405
88331
-
Thr
GGT
[ENA]
¡û
>W1710913310
LNSJ01000001
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
51846
51920
+
Thr
GGT
[ENA]
¡û
>W1710913381
LNSK01000003
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
279642
279716
+
Thr
GGT
[ENA]
¡û
>W131100421
AOUN01000006
Alphaproteobacteria
Sphingopyxis sp. MC1 [AOUN]
332965
332891
-
Thr
GGT
[ENA]
¡û
>W1711127850
LURA01000049
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
16362
16288
-
Thr
GGT
[ENA]
¡û
>W1711127886
LURB01000021
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
7206
7132
-
Thr
GGT
[ENA]
¡û
>W1711127938
LURE01000006
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
47612
47686
+
Thr
GGT
[ENA]
¡û
>W1711128034
LURH01000020
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
26250
26324
+
Thr
GGT
[ENA]
¡û
>W1711128053
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
620066
620140
+
Thr
GGT
[ENA]
¡û
>W1711503959
MKUC01000043
Alphaproteobacteria
Sphingopyxis sp. 65-8 [MKUC]
24161
24087
-
Thr
GGT
[ENA]
¡û
>WENV181166985
OEIU01005510
[OEIU] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
2110
2036
-
Thr
GGT
[ENA]
¢þ
>WENV181402276
OFTY01000410
[OFTY] sludge metagenome; sludge
1756
1830
+
Thr
GGT
[ENA]
¢þ
>WENV183729196
PJTQ01010092
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
1237
1163
-
Thr
GGT
[ENA]
¢þ
>WENV170229084
CEQG01073463
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
990
916
-
Thr
GGT
[ENA]
¢þ
>WENV170727452
LULE01000103
[LULE] marine metagenome; Red Sea water column Station 192 - depth 10m
16534
16460
-
Thr
GGT
[ENA]
¢þ
>WENV170729052
LULF01006206
[LULF] marine metagenome; Red Sea water column Station 169 - depth 500m
1191
1265
+
Thr
GGT
[ENA]
¢þ
>WENV170732009
LULI01010658
[LULI] marine metagenome; Red Sea water column Station 169 - depth 50m
51
125
+
Thr
GGT
[ENA]
¢þ
>WENV170732884
LULJ01001858
[LULJ] marine metagenome; Red Sea water column Station 169 - depth 25m
5673
5747
+
Thr
GGT
[ENA]
¢þ
>WENV170734538
LULK01009349
[LULK] marine metagenome; Red Sea water column Station 169 - depth 10m
1677
1751
+
Thr
GGT
[ENA]
¢þ
>WENV170735579
LULL01004537
[LULL] marine metagenome; Red Sea water column Station 149 - depth 500m
2308
2380
+
Thr
GGT
[ENA]
¢þ
>WENV170736290
LULM01000741
[LULM] marine metagenome; Red Sea water column Station 149 - depth 200m
6450
6524
+
Thr
GGT
[ENA]
¢þ
>WENV170737526
LULO01000474
[LULO] marine metagenome; Red Sea water column Station 149 - depth 50m
6855
6781
-
Thr
GGT
[ENA]
¢þ
>WENV170738332
LULP01000003
[LULP] marine metagenome; Red Sea water column Station 149 - depth 25m
47612
47686
+
Thr
GGT
[ENA]
¢þ
>WENV170739648
LULQ01006354
[LULQ] marine metagenome; Red Sea water column Station 149 - depth 10m
3124
3198
+
Thr
GGT
[ENA]
¢þ
>WENV170741096
LULS01007128
[LULS] marine metagenome; Red Sea water column Station 108 - depth 200m
1103
1177
+
Thr
GGT
[ENA]
¢þ
>WENV170742571
LULU01040246
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
779
705
-
Thr
GGT
[ENA]
¢þ
>WENV170742642
LULV01000014
[LULV] marine metagenome; Red Sea water column Station 108 - depth 25m
7206
7132
-
Thr
GGT
[ENA]
¢þ
>WENV170743466
LULW01000129
[LULW] marine metagenome; Red Sea water column Station 108 - depth 10m
16362
16288
-
Thr
GGT
[ENA]
¢þ
>WENV170759504
LUMT01000002
[LUMT] marine metagenome; Red Sea water column Station 192 - depth 50m
620066
620140
+
Thr
GGT
[ENA]
¢þ
>WENV170761392
LUMV01000185
[LUMV] marine metagenome; Red Sea water column Station 192 - depth 200m
8461
8535
+
Thr
GGT
[ENA]
¢þ
>W1910501779
FYAT01000016
Alphaproteobacteria
Sphingopyxis sp. P1IMeth2 [FYAT]
166381
166307
-
Thr
GGT
[ENA]
¡û
>W1910549128
FZPA01000016
Alphaproteobacteria
Sphingopyxis indica DS15 [FZPA]
5897
5971
+
Thr
GGT
[ENA]
¡û
>W1910934237
NIWD01000003
Alphaproteobacteria
Sphingopyxis sp. GW247-27LB [NIWD]
22513
22439
-
Thr
GGT
[ENA]
¡û
>W1911411575
NWUR01000012
Alphaproteobacteria
Sphingopyxis terrae DSM 24316 [NWUR]
18251
18325
+
Thr
GGT
[ENA]
¡û
>W1810107971
PHFW01000002
Alphaproteobacteria
Sphingopyxis lindanitolerans WS5A3p [PHFW]
177228
177154
-
Thr
GGT
[ENA]
¡û
>W1810594374
QFZL01000003
Alphaproteobacteria
Sphingosinithalassobacter portus FM6 [QFZL]
557075
557001
-
Thr
GGT
[ENA]
¡û
>C151051492
CP009452
Alphaproteobacteria
Sphingopyxis sp. 113P3 [CP009452]
1389090
1389164
+
Thr
GGT
-
¡û
>C161021408
CP009429
Alphaproteobacteria
Sphingopyxis macrogoltabida 203 [CP009429]
2984972
2984898
-
Thr
GGT
[Ensembl]
¡û
>C161043673
CP012700
Alphaproteobacteria
Sphingopyxis macrogoltabida EY-1 [CP012700]
2255795
2255721
-
Thr
GGT
[Ensembl]
¡û
>C161055605
CP013342
Alphaproteobacteria
Sphingopyxis terrae subsp. terrae NBRC 15098 203-1 [CP013342]
2800410
2800484
+
Thr
GGT
[Ensembl]
¡û
>C161055672
CP013344
Alphaproteobacteria
Sphingopyxis macrogoltabida 203N [CP013344]
3178948
3178874
-
Thr
GGT
-
¡û
>W1610077674
BCZQ01000010
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
4684
4758
+
Thr
GGT
[ENA]
¡û
>W1610771418
LNSD01000005
Alphaproteobacteria
Sphingopyxis sp. H057 [LNSD]
150862
150788
-
Thr
GGT
[ENA]
¡û
>W1610771457
LNSE01000003
Alphaproteobacteria
Sphingopyxis sp. H067 [LNSE]
88401
88327
-
Thr
GGT
[ENA]
¡û
>W1610771503
LNSF01000003
Alphaproteobacteria
Sphingopyxis sp. H071 [LNSF]
150862
150788
-
Thr
GGT
[ENA]
¡û
>W1610771548
LNSG01000003
Alphaproteobacteria
Sphingopyxis sp. H073 [LNSG]
150862
150788
-
Thr
GGT
[ENA]
¡û
>W1610771583
LNSH01000001
Alphaproteobacteria
Sphingopyxis sp. H081 [LNSH]
34027
33953
-
Thr
GGT
[ENA]
¡û
>W1610771635
LNSI01000002
Alphaproteobacteria
Sphingopyxis sp. H100 [LNSI]
88405
88331
-
Thr
GGT
[ENA]
¡û
>W1610771669
LNSJ01000001
Alphaproteobacteria
Sphingopyxis sp. H107 [LNSJ]
51846
51920
+
Thr
GGT
[ENA]
¡û
>W1610771740
LNSK01000003
Alphaproteobacteria
Sphingopyxis sp. A083 [LNSK]
279642
279716
+
Thr
GGT
[ENA]
¡û
>W1610938964
LURA01000049
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S22_B5 [LURA]
16362
16288
-
Thr
GGT
[ENA]
¡û
>W1610939000
LURB01000021
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S23_B6 [LURB]
7206
7132
-
Thr
GGT
[ENA]
¡û
>W1610939052
LURE01000006
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S29_B3 [LURE]
47612
47686
+
Thr
GGT
[ENA]
¡û
>W1610939148
LURH01000020
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S40_B6 [LURH]
26250
26324
+
Thr
GGT
[ENA]
¡û
>W1610939167
LURI01000004
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S42_B3 [LURI]
620066
620140
+
Thr
GGT
[ENA]
¡û
>W1710075312
BCZQ01000010
Alphaproteobacteria
Sphingopyxis terrae NBRC 15098 [BCZQ]
4684
4758
+
Thr
GGT
[ENA]
¡û
>W1710602865
FUYP01000001
Alphaproteobacteria
Sphingopyxis flava [FUYP]
230022
229948
-
Thr
GGT
[ENA]
¡û
>W1710609447
FXWL01000003
Alphaproteobacteria
Sphingopyxis terrae ummariensis [FXWL]
18345
18419
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK