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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655371 (59 seq.)
>A171001578
CP002062
Euryarchaeota
Halalkalicoccus jeotgali B3 [CP002062]
2014149
2014221
+
Ala
GGC
-
¡û
>A171002698
CP003050
Euryarchaeota
Halovivax ruber XH-70 [CP003050]
867049
867120
+
Ala
GGC
-
¡û
>A171003471
CP003929
Euryarchaeota
Natronococcus occultus SP4 [CP003929]
821011
821082
+
Ala
GGC
-
¡û
>A171004156
CP007055
Euryarchaeota
Halostagnicola larsenii XH-48 [CP007055]
931204
931133
-
Ala
GGC
-
¡û
>A171006694
CP016070
Euryarchaeota
Halodesulfurarchaeum formicicum HTSR1 [CP016070]
1178451
1178523
+
Ala
GGC
-
¡û
>A171006735
CP016804
Euryarchaeota
Halodesulfurarchaeum formicicum HSR6 [CP016804]
1265887
1265959
+
Ala
GGC
-
¡û
>WENV180273634
OBEU01002111
[OBEU] marine metagenome; marine
634
563
-
Ala
GGC
[ENA]
¢þ
>WENV180318419
OBKM01000766
[OBKM] metagenome; water
9871
9800
-
Ala
GGC
[ENA]
¢þ
>WENV170679839
LFCJ01000785
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
20642
20571
-
Ala
GGC
[ENA]
¢þ
>WENV170679846
LFCJ01000870
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
19829
19758
-
Ala
GGC
[ENA]
¢þ
>WENV170679943
LFCJ01001801
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
14935
14863
-
Ala
GGC
[ENA]
¢þ
>WENV170680065
LFCJ01003396
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
74
2
-
Ala
GGC
[ENA]
¢þ
>WENV170680067
LFCJ01003423
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
5734
5663
-
Ala
GGC
[ENA]
¢þ
>WENV170680069
LFCJ01003459
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
35
107
+
Ala
GGC
[ENA]
¢þ
>WENV170680142
LFCJ01004822
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
9710
9636
-
Ala
GGC
[ENA]
¢þ
>WENV170680384
LFCJ01009994
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
6605
6533
-
Ala
GGC
[ENA]
¢þ
>WENV170681129
LFFM01000096
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
22069
21998
-
Ala
GGC
[ENA]
¢þ
>WENV170681168
LFFM01000154
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
9800
9872
+
Ala
GGC
[ENA]
¢þ
>WENV170681365
LFFM01000596
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
24366
24440
+
Ala
GGC
[ENA]
¢þ
>WENV170681520
LFFM01001197
[LFFM] soda lake metagenome; sample Tc-Br; brine of Tanatar trona crystallizer
13186
13260
+
Ala
GGC
[ENA]
¢þ
>WENV170702138
LKMJ01000612
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
27584
27655
+
Ala
GGC
[ENA]
¢þ
>WENV170703221
LKMJ01008116
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
9801
9872
+
Ala
GGC
[ENA]
¢þ
>WENV170703277
LKMJ01008825
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6589
6660
+
Ala
GGC
[ENA]
¢þ
>WENV170703422
LKMJ01011352
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
1083
1012
-
Ala
GGC
[ENA]
¢þ
>WENV170703430
LKMJ01011475
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
405
334
-
Ala
GGC
[ENA]
¢þ
>WENV170703913
LKMJ01018626
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
6040
5968
-
Ala
GGC
[ENA]
¢þ
>WENV170703916
LKMJ01018696
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
5746
5672
-
Ala
GGC
[ENA]
¢þ
>WENV170704122
LKMJ01023166
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
4281
4355
+
Ala
GGC
[ENA]
¢þ
>W1910006867
BBMO01000001
Euryarchaeota
Halapricum salinum CBA1105 [BBMO]
1181581
1181510
-
Ala
GGC
[ENA]
¡û
>W1910193557
CSTE01000002
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
987269
987197
-
Ala
GGC
[ENA]
¡û
>W1910226886
FNFC01000017
Euryarchaeota
Halovenus aranensis IBRC-M10015 [FNFC]
61286
61357
+
Ala
GGC
[ENA]
¡û
>W1910227049
FNIA01000008
Euryarchaeota
Haloarchaeobius iranensis EB21,IBRC-M 10013,KCTC 4048 [FNIA]
131632
131703
+
Ala
GGC
[ENA]
¡û
>W1910227103
FNKQ01000002
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
635217
635145
-
Ala
GGC
[ENA]
¡û
>W1910230702
FOYS01000002
Euryarchaeota
Halogeometricum limi CGMCC 1.8711 [FOYS]
386639
386567
-
Ala
GGC
[ENA]
¡û
>W1910230736
FOYT01000001
Euryarchaeota
Halogeometricum rufum CGMCC 1.7736 [FOYT]
1392176
1392248
+
Ala
GGC
[ENA]
¡û
>W1910230781
FOZK01000001
Euryarchaeota
Halomicrobium zhouii CGMCC 1.10457 [FOZK]
1597867
1597796
-
Ala
GGC
[ENA]
¡û
>W1910230852
FOZS01000002
Euryarchaeota
Halostagnicola kamekurae DSM 22427 [FOZS]
661791
661863
+
Ala
GGC
[ENA]
¡û
>W1910282436
FRAN01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [FRAN]
128691
128762
+
Ala
GGC
[ENA]
¡û
>W1910340467
FTNO01000001
Euryarchaeota
Haladaptatus litoreus CGMCC 1.7737 [FTNO]
1413229
1413158
-
Ala
GGC
[ENA]
¡û
>W1910568545
JDTH01000002
Euryarchaeota
Haladaptatus cibarius D43 [JDTH]
369750
369821
+
Ala
GGC
[ENA]
¡û
>W1910572572
JMIP02000018
Euryarchaeota
Halostagnicola sp. A56 [JMIP]
49424
49353
-
Ala
GGC
[ENA]
¡û
>W1910573496
JPES01000120
Euryarchaeota
Haloferax sp. ATB1 [JPES]
18028
17956
-
Ala
GGC
[ENA]
¡û
>W1910696277
MEIH01000128
Euryarchaeota
Haladaptatus sp. W1 [MEIH]
6723
6652
-
Ala
GGC
[ENA]
¡û
>W1911696806
QNGA01000001
Euryarchaeota
halophilic archaeon H22 [QNGA]
1450780
1450708
-
Ala
GGC
[ENA]
¡û
>W1911709983
QPND01000008
Euryarchaeota
Saliphagus sp. LR7 [QPND]
136441
136369
-
Ala
GGC
[ENA]
¡û
>W1911717847
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
679424
679352
-
Ala
GGC
[ENA]
¡û
>W1610002984
AEMG01000012
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AEMG]
18933
18862
-
Ala
GGC
[ENA]
¡û
>W1610011863
AOHV01000030
Euryarchaeota
Halalkalicoccus jeotgali B3 [AOHV]
28319
28245
-
Ala
GGC
[ENA]
¡û
>W1610012099
AOIA01000160
Euryarchaeota
Natronococcus jeotgali DSM 18795 [AOIA]
8626
8552
-
Ala
GGC
[ENA]
¡û
>W1610012884
AOIV01000045
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
239184
239112
-
Ala
GGC
[ENA]
¡û
>W1610014101
AOLP01000019
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
71099
71027
-
Ala
GGC
[ENA]
¡û
>W1610018865
AQXI01000001
Euryarchaeota
Haladaptatus paucihalophilus DX253 [AQXI]
714215
714144
-
Ala
GGC
[ENA]
¡û
>W1610020303
ASGZ01000049
Euryarchaeota
Candidatus Halobonum tyrrellensis tyrrellensis G22 [ASGZ]
3143
3072
-
Ala
GGC
[ENA]
¡û
>W1610029939
AXZD01000009
Euryarchaeota
Halalkalicoccus jeotgali B3 [AXZD]
4879
4953
+
Ala
GGC
[ENA]
¡û
>W1610041534
BATA01000023
Euryarchaeota
Halarchaeum acidiphilum MH1-52-1 JCM 16109 [BATA]
18036
17965
-
Ala
GGC
[ENA]
¡û
>W1610682564
LKND01000013
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g14 [LKND]
9800
9872
+
Ala
GGC
[ENA]
¡û
>W1610682649
LKNG01000011
Euryarchaeota
Natrialbaceae archaeon Tc-Br11_E2g8 [LKNG]
24366
24440
+
Ala
GGC
[ENA]
¡û
>W1610925057
LTAZ01000005
Euryarchaeota
Halalkalicoccus paucihalophilus DSM 24557 [LTAZ]
186010
185938
-
Ala
GGC
[ENA]
¡û
>W1610986956
LWHG01000028
Euryarchaeota
Haladaptatus sp. R4 [LWHG]
275495
275423
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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