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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655386 (70 seq.)
>W1710797090
LJST01000040
Gammaproteobacteria
Halomonas sp. HL-93 [LJST]
17
91
+
Gln
TTG
[ENA]
¡û
>W1710805063
LJZS01000004
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
250203
250129
-
Gln
TTG
[ENA]
¡û
>W1710805084
LJZS01000011
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
21185
21111
-
Gln
TTG
[ENA]
¡û
>W1711221611
LXRG01000110
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
15204
15278
+
Gln
TTG
[ENA]
¡û
>W1711261930
LYXG01000021
Gammaproteobacteria
Halomonas sp. G11 [LYXG]
14716
14790
+
Gln
TTG
[ENA]
¡û
>W1711261952
LYXG01000043
Gammaproteobacteria
Halomonas sp. G11 [LYXG]
82591
82665
+
Gln
TTG
[ENA]
¡û
>W1711434596
MINL01000001
Gammaproteobacteria
Halomonas sp. QHL1 [MINL]
1591197
1591271
+
Gln
TTG
[ENA]
¡û
>W1711434623
MINL01000001
Gammaproteobacteria
Halomonas sp. QHL1 [MINL]
2065340
2065266
-
Gln
TTG
[ENA]
¡û
>W1711959299
NBYR01000011
Gammaproteobacteria
Halomonas sp. CSM-2 [NBYR]
140439
140365
-
Gln
TTG
[ENA]
¡û
>W131095888
AOPO01000025
Gammaproteobacteria
Halomonas titanicae BH1 [AOPO]
27566
27492
-
Gln
TTG
[ENA]
¡û
>WENV181233752
OFET01000070
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
83073
82999
-
Gln
TTG
[ENA]
¢þ
>WENV181233818
OFET01000118
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
96556
96482
-
Gln
TTG
[ENA]
¢þ
>WENV181234486
OFEU01000209
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
16844
16770
-
Gln
TTG
[ENA]
¢þ
>WENV181234596
OFEU01000513
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
14511
14585
+
Gln
TTG
[ENA]
¢þ
>W141252175
CBRE010000079
Gammaproteobacteria
Halomonas sp. A3H3 [CBRE]
15609
15683
+
Gln
TTG
[ENA]
¡û
>WENV182547963
OJBU01005272
[OJBU] seawater metagenome; Sea water
1042
968
-
Gln
TTG
[ENA]
¢þ
>WENV182567220
OJEN01016715
[OJEN] seawater metagenome; Sea water
517
443
-
Gln
TTG
[ENA]
¢þ
>WENV182568047
OJEP01020059
[OJEP] seawater metagenome; Sea water
659
733
+
Gln
TTG
[ENA]
¢þ
>WENV182568524
OJEV01000526
[OJEV] seawater metagenome; Sea water
1861
1787
-
Gln
TTG
[ENA]
¢þ
>WENV182572633
OJFM01000083
[OJFM] seawater metagenome; Sea water
4044
3970
-
Gln
TTG
[ENA]
¢þ
>WENV182575877
OJFX01000082
[OJFX] seawater metagenome; Sea water
8322
8248
-
Gln
TTG
[ENA]
¢þ
>WENV182575996
OJFX01001220
[OJFX] seawater metagenome; Sea water
8563
8637
+
Gln
TTG
[ENA]
¢þ
>WENV182577486
OJGF01004619
[OJGF] seawater metagenome; Sea water
562
636
+
Gln
TTG
[ENA]
¢þ
>WENV182577798
OJGI01001336
[OJGI] seawater metagenome; Sea water
1524
1598
+
Gln
TTG
[ENA]
¢þ
>WENV182585128
OJHH01001822
[OJHH] seawater metagenome; Sea water
4835
4909
+
Gln
TTG
[ENA]
¢þ
>WENV182591144
OJIL01000033
[OJIL] seawater metagenome; Sea water
10567
10493
-
Gln
TTG
[ENA]
¢þ
>WENV182591155
OJIL01000081
[OJIL] seawater metagenome; Sea water
3838
3764
-
Gln
TTG
[ENA]
¢þ
>WENV182591501
OJIO01000219
[OJIO] seawater metagenome; Sea water
29906
29832
-
Gln
TTG
[ENA]
¢þ
>W141275920
JADJ01000031
Gammaproteobacteria
Halomonas sp. 23_GOM-1509m [JADJ]
27913
27839
-
Gln
TTG
[ENA]
¡û
>WENV170014190
AXCI01000390
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
104799
104725
-
Gln
TTG
[ENA]
¢þ
>WENV170014252
AXCI01003297
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
5230
5156
-
Gln
TTG
[ENA]
¢þ
>WENV170014287
AXCI01004438
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
3002
2928
-
Gln
TTG
[ENA]
¢þ
>WENV170014293
AXCI01004540
[AXCI] groundwater metagenome; Mt. Simon Sandstone pore water sample D5872 at 1.8km depth, Illinois-Basin Decatur Project
1081
1155
+
Gln
TTG
[ENA]
¢þ
>WENV170112254
CEGE01000295
[CEGE] microbial mat metagenome; grass silage
9347
9273
-
Gln
TTG
[ENA]
¢þ
>WENV170692396
LGOV01005533
[LGOV] marine sediment metagenome; sample #5579, elevator 3A push core 41 containing 12 cm of sediment, collected at Hydrate Ridge
15125
15199
+
Gln
TTG
[ENA]
¢þ
>WENV170699906
LGVF01679383
[LGVF] marine sediment metagenome; combined push core samples #3730, #5133, and #5579 collected at Hydrate Ridge
3680
3606
-
Gln
TTG
[ENA]
¢þ
>C191165459
CP039374
Gammaproteobacteria
Halomonas titanicae ANRCS81 [CP039374]
2778357
2778431
+
Gln
TTG
-
¡û
>W141564682
JIAY01000027
Gammaproteobacteria
Halomonas sp. 19A_GOM-1509m [JIAY]
27947
27873
-
Gln
TTG
[ENA]
¡û
>W141703433
JMMC01000009
Gammaproteobacteria
Halomonas sp. HL-48 [JMMC]
355699
355773
+
Gln
TTG
[ENA]
¡û
>W141703457
JMMC01000014
Gammaproteobacteria
Halomonas sp. HL-48 [JMMC]
312173
312247
+
Gln
TTG
[ENA]
¡û
>W141754427
JNVS01000006
Gammaproteobacteria
Halomonas sp. KO116 [JNVS]
8343
8269
-
Gln
TTG
[ENA]
¡û
>W141754447
JNVS01000018
Gammaproteobacteria
Halomonas sp. KO116 [JNVS]
160856
160782
-
Gln
TTG
[ENA]
¡û
>W141818908
JQLV01000002
Gammaproteobacteria
Halomonas sp. TG39a [JQLV]
365068
365142
+
Gln
TTG
[ENA]
¡û
>W141818911
JQLV01000002
Gammaproteobacteria
Halomonas sp. TG39a [JQLV]
949862
949788
-
Gln
TTG
[ENA]
¡û
>W1910006965
BBQX01000043
Gammaproteobacteria
Halomonas sp. MBEE15 [BBQX]
24563
24489
-
Gln
TTG
[ENA]
¡û
>W1910377565
FUKM01000038
Gammaproteobacteria
Halomonas sp. JB380 [FUKM]
5358
5284
-
Gln
TTG
[ENA]
¡û
>W1911148537
NPEY01000003
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
15446
15520
+
Gln
TTG
[ENA]
¡û
>W1911148574
NPEY01000009
Gammaproteobacteria
Halomonas boliviensis LC1 [NPEY]
117529
117603
+
Gln
TTG
[ENA]
¡û
>W1810156473
PJBI01000044
Gammaproteobacteria
Halomonas sp. Choline-3u-9 [PJBI]
15235
15309
+
Gln
TTG
[ENA]
¡û
>W1810157183
PJBT01000015
Gammaproteobacteria
Halomonas sp. MES3-P3E [PJBT]
22378
22452
+
Gln
TTG
[ENA]
¡û
>W1810157203
PJBT01000084
Gammaproteobacteria
Halomonas sp. MES3-P3E [PJBT]
225
151
-
Gln
TTG
[ENA]
¡û
>W1810722039
QNTU01000003
Gammaproteobacteria
Halomonas sulfidaeris SST4 [QNTU]
14824
14898
+
Gln
TTG
[ENA]
¡û
>C151075834
CP011052
Gammaproteobacteria
Halomonas sp. KO116 [CP011052]
1023529
1023603
+
Gln
TTG
[Ensembl]
¡û
>C151075888
CP011052
Gammaproteobacteria
Halomonas sp. KO116 [CP011052]
1565174
1565100
-
Gln
TTG
[Ensembl]
¡û
>C151104126
LN813019
Gammaproteobacteria
Halomonas sp. R57-5 [LN813019]
1066716
1066790
+
Gln
TTG
-
¡û
>C151104182
LN813019
Gammaproteobacteria
Halomonas sp. R57-5 [LN813019]
1681427
1681353
-
Gln
TTG
-
¡û
>W1511479221
JWHY01000017
Gammaproteobacteria
Halomonas sp. KHS3 [JWHY]
39671
39597
-
Gln
TTG
[ENA]
¡û
>W11180579
AGIB01000030
Gammaproteobacteria
Halomonas sp. HAL1 [AGIB]
9427
9501
+
Gln
TTG
[ENA]
¡û
>W11180591
AGIB01000042
Gammaproteobacteria
Halomonas sp. HAL1 [AGIB]
1374
1300
-
Gln
TTG
[ENA]
¡û
>C161109465
LT593974
Gammaproteobacteria
Halomonas sp. HL-93 [LT593974]
3550888
3550814
-
Gln
TTG
-
¡û
>W121016456
AGQZ01000049
Gammaproteobacteria
Halomonas boliviensis LC1 [AGQZ]
159894
159968
+
Gln
TTG
[ENA]
¡û
>W121016471
AGQZ01000060
Gammaproteobacteria
Halomonas boliviensis LC1 [AGQZ]
40075
40001
-
Gln
TTG
[ENA]
¡û
>W1610661047
LJST01000040
Gammaproteobacteria
Halomonas sp. HL-93 [LJST]
17
91
+
Gln
TTG
[ENA]
¡û
>W1610668920
LJZS01000004
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
250203
250129
-
Gln
TTG
[ENA]
¡û
>W1610668941
LJZS01000011
Gammaproteobacteria
Halomonas sp. HL-48 [LJZS]
21185
21111
-
Gln
TTG
[ENA]
¡û
>W1611006080
LXRG01000110
Gammaproteobacteria
Halomonas sp. ALS9 [LXRG]
15204
15278
+
Gln
TTG
[ENA]
¡û
>W1611023853
LYXG01000021
Gammaproteobacteria
Halomonas sp. G11 [LYXG]
14716
14790
+
Gln
TTG
[ENA]
¡û
>W1611023875
LYXG01000043
Gammaproteobacteria
Halomonas sp. G11 [LYXG]
82591
82665
+
Gln
TTG
[ENA]
¡û
>W1710518758
FNEF01000029
Gammaproteobacteria
Halomonas titanicae DSM 26667 [FNEF]
66382
66308
-
Gln
TTG
[ENA]
¡û
>W1710523951
FNII01000024
Gammaproteobacteria
Halomonas arcis [FNII]
23694
23620
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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