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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655401 (41 seq.)
>W1710989552
LPWA01000001
Alphaproteobacteria
Mesorhizobium loti [LPWA]
228626
228700
+
Val
GAC
[ENA]
¡û
>W1711257268
LYTM01000054
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
178457
178531
+
Val
GAC
[ENA]
¡û
>W1711257357
LYTP01000023
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
158230
158156
-
Val
GAC
[ENA]
¡û
>W131219391
ATYO01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3224 [ATYO]
267530
267604
+
Val
GAC
[ENA]
¡û
>W1711353176
MDDT01000024
Alphaproteobacteria
Mesorhizobium sp. LCM 4576 [MDDT]
484856
484782
-
Val
GAC
[ENA]
¡û
>W1711353206
MDDU01000002
Alphaproteobacteria
Mesorhizobium sp. LCM 4577 [MDDU]
248839
248913
+
Val
GAC
[ENA]
¡û
>W1711354764
MDFL01000159
Alphaproteobacteria
Mesorhizobium sp. ORS 3428 ORS3428 [MDFL]
90719
90645
-
Val
GAC
[ENA]
¡û
>WENV180020014
FTCV01000541
[FTCV] metagenome; soil
1847
1921
+
Val
GAC
[ENA]
¢þ
>W141266666
CCMY01000013
Alphaproteobacteria
Mesorhizobium sp. ORS 3324 ORS3324 [CCMY]
13605
13531
-
Val
GAC
[ENA]
¡û
>W141266748
CCMZ01000075
Alphaproteobacteria
Mesorhizobium plurifarium [CCMZ]
121270
121196
-
Val
GAC
[ENA]
¡û
>W141266763
CCNA01000006
Alphaproteobacteria
Mesorhizobium sp. SOD10 [CCNA]
449850
449924
+
Val
GAC
[ENA]
¡û
>W141266835
CCNB01000043
Alphaproteobacteria
Mesorhizobium plurifarium [CCNB]
486823
486897
+
Val
GAC
[ENA]
¡û
>W141266849
CCNC01000046
Alphaproteobacteria
Mesorhizobium sp. ORS 3359 ORS3359 [CCNC]
301761
301687
-
Val
GAC
[ENA]
¡û
>W141266898
CCNE01000012
Alphaproteobacteria
Mesorhizobium plurifarium [CCNE]
280807
280881
+
Val
GAC
[ENA]
¡û
>C191125552
CP034444
Alphaproteobacteria
Mesorhizobium sp. M1D.F.Ca.ET.043.01.1.1 [CP034444]
5054095
5054021
-
Val
GAC
-
¡û
>C191125573
CP034445
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.02.1.1 [CP034445]
1560421
1560495
+
Val
GAC
-
¡û
>C191125660
CP034446
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.043.05.1.1 [CP034446]
46094
46020
-
Val
GAC
-
¡û
>C191125704
CP034447
Alphaproteobacteria
Mesorhizobium sp. M1E.F.Ca.ET.045.02.1.1 [CP034447]
3169195
3169121
-
Val
GAC
-
¡û
>C191125759
CP034448
Alphaproteobacteria
Mesorhizobium sp. M1B.F.Ca.ET.045.04.1.1 [CP034448]
2419477
2419403
-
Val
GAC
-
¡û
>C191125804
CP034449
Alphaproteobacteria
Mesorhizobium sp. M2A.F.Ca.ET.046.03.2.1 [CP034449]
4841702
4841628
-
Val
GAC
-
¡û
>C191125838
CP034451
Alphaproteobacteria
Mesorhizobium sp. M3A.F.Ca.ET.080.04.2.1 [CP034451]
4851767
4851841
+
Val
GAC
-
¡û
>W1911242448
NSFT01000003
Alphaproteobacteria
Mesorhizobium sp. WSM4313 [NSFT]
118716
118642
-
Val
GAC
[ENA]
¡û
>W1911242678
NSFY01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3882 [NSFY]
463020
463094
+
Val
GAC
[ENA]
¡û
>W1911242724
NSFZ01000001
Alphaproteobacteria
Mesorhizobium sp. WSM3879 [NSFZ]
454451
454525
+
Val
GAC
[ENA]
¡û
>W1911242795
NSGA01000005
Alphaproteobacteria
Mesorhizobium sp. WSM3876 [NSGA]
107121
107047
-
Val
GAC
[ENA]
¡û
>W1911242827
NSGB01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3868 [NSGB]
12906
12832
-
Val
GAC
[ENA]
¡û
>W1911242884
NSGC01000004
Alphaproteobacteria
Mesorhizobium sp. WSM3866 [NSGC]
245175
245249
+
Val
GAC
[ENA]
¡û
>W1911242931
NSGD01000003
Alphaproteobacteria
Mesorhizobium sp. WSM3864 [NSGD]
344978
345052
+
Val
GAC
[ENA]
¡û
>W1911242974
NSGE01000002
Alphaproteobacteria
Mesorhizobium sp. WSM3862 [NSGE]
324383
324309
-
Val
GAC
[ENA]
¡û
>W1911243035
NSGF01000004
Alphaproteobacteria
Mesorhizobium sp. WSM3860 [NSGF]
130417
130343
-
Val
GAC
[ENA]
¡û
>W1911243087
NSGG01000004
Alphaproteobacteria
Mesorhizobium sp. WSM3859 [NSGG]
81877
81803
-
Val
GAC
[ENA]
¡û
>W1911695521
QMBQ01000002
Alphaproteobacteria
Mesorhizobium atlanticum CNPSo 3140 [QMBQ]
321551
321477
-
Val
GAC
[ENA]
¡û
>W1911695522
QMBQ01000002
Alphaproteobacteria
Mesorhizobium atlanticum CNPSo 3140 [QMBQ]
309209
309135
-
Val
GAC
[ENA]
¡û
>W1810698985
QMBP01000002
Alphaproteobacteria
Mesorhizobium hawassense AC99b [QMBP]
330858
330932
+
Val
GAC
[ENA]
¡û
>W1610083676
CCND01000017
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
171489
171563
+
Val
GAC
[ENA]
¡û
>W1610844428
LPWA01000001
Alphaproteobacteria
Mesorhizobium loti [LPWA]
228626
228700
+
Val
GAC
[ENA]
¡û
>W1611020244
LYTM01000054
Alphaproteobacteria
Mesorhizobium sp. WSM3873 [LYTM]
178457
178531
+
Val
GAC
[ENA]
¡û
>W1611020379
LYTP01000023
Alphaproteobacteria
Mesorhizobium sp. AA23 [LYTP]
158230
158156
-
Val
GAC
[ENA]
¡û
>W1710088693
CCND01000017
Alphaproteobacteria
Mesorhizobium plurifarium [CCND]
171489
171563
+
Val
GAC
[ENA]
¡û
>W1710567085
FOSL01000007
Alphaproteobacteria
Mesorhizobium albiziae [FOSL]
190481
190407
-
Val
GAC
[ENA]
¡û
>W1710571233
FOVT01000002
Alphaproteobacteria
Mesorhizobium sp. NFR06 [FOVT]
464091
464165
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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