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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
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Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655455 (130 seq.)
>A171000840
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
2000954
2000882
-
Ala
GGC
-
¡û
>A171001163
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
1103584
1103656
+
Ala
GGC
-
¡û
>A171001164
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
1104454
1104526
+
Ala
GGC
-
¡û
>A171001388
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
1048559
1048630
+
Ala
GGC
-
¡û
>A171002637
CP002921
Euryarchaeota
Haloarcula hispanica ATCC 33960 CGMCC 1.2049 [CP002921, CP002922]
1937115
1937044
-
Ala
GGC
-
¡û
>A171003053
CP003372
Euryarchaeota
Natrinema pellirubrum DSM 15624 [CP003372]
2744779
2744850
+
Ala
GGC
-
¡û
>A171003177
CP003412
Euryarchaeota
Natrinema sp. J7-2 [CP003412]
2791693
2791622
-
Ala
GGC
-
¡û
>A171003970
CP006884
Euryarchaeota
Haloarcula hispanica N601 [CP006884, CP006885]
1948548
1948477
-
Ala
GGC
-
¡û
>A171005827
CP010529
Euryarchaeota
Haloarcula sp. CBA1115 [CP010529]
533099
533028
-
Ala
GGC
-
¡û
>A171006198
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
1061451
1061522
+
Ala
GGC
-
¡û
>A171006199
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
1062911
1062982
+
Ala
GGC
-
¡û
>A171007147
FR746099
Euryarchaeota
Haloquadratum walsbyi C23 DSM 16854 [FR746099]
1615720
1615793
+
Ala
GGC
-
¡û
>WENV170009131
APHM01021421
[APHM] hypersaline lake metagenome; filtered surface water from Lake Tyrrell
191300
191371
+
Ala
GGC
[ENA]
¢þ
>At0779
AY596297
Euryarchaeota
Haloarcula marismortui ATCC 43049 [AY596297, AY596298]
1263995
1263924
-
Ala
GGC
[Ensembl]
¡û
>At0850
AM180088
Euryarchaeota
Haloquadratum walsbyi DSM 16790 DSM 16790 [AM180088]
1604298
1604369
+
Ala
GGC
[Ensembl]
¡û
>WENV170680285
LFCJ01007106
[LFCJ] soda lake metagenome; sample B1-Br-g2; brine of Lake Bitter-1
73
2
-
Ala
GGC
[ENA]
¢þ
>WENV170702183
LKMJ01000786
[LKMJ] soda lake metagenome; sample PL-Br10; brine of Picturesque Lake
14717
14789
+
Ala
GGC
[ENA]
¢þ
>W1910006710
BBJO01000031
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
112721
112650
-
Ala
GGC
[ENA]
¡û
>W1910175114
BIXZ01000004
Euryarchaeota
Haloarcula mannanilytica MD-130 MD130-1 [BIXZ]
125959
126030
+
Ala
GGC
[ENA]
¡û
>W1910186252
CCDK010000005
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
613327
613398
+
Ala
GGC
[ENA]
¡û
>W1910186253
CCDK010000005
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
615027
615098
+
Ala
GGC
[ENA]
¡û
>W1910193558
CSTE01000002
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
986083
986011
-
Ala
GGC
[ENA]
¡û
>W1910226678
FMZP01000002
Euryarchaeota
Natrinema hispanicum CDM_1 [FMZP]
151589
151517
-
Ala
GGC
[ENA]
¡û
>W1910226996
FNHL01000001
Euryarchaeota
Halogranum gelatinilyticum CGMCC 1.10119 [FNHL]
1104585
1104514
-
Ala
GGC
[ENA]
¡û
>W1910228398
FNOF01000012
Euryarchaeota
Haloarcula vallismortis DSM 3756 [FNOF]
110039
110110
+
Ala
GGC
[ENA]
¡û
>W1910229604
FOAD01000001
Euryarchaeota
Haloferax larsenii CDM_5 [FOAD]
764530
764601
+
Ala
GGC
[ENA]
¡û
>W1910229605
FOAD01000001
Euryarchaeota
Haloferax larsenii CDM_5 [FOAD]
765358
765429
+
Ala
GGC
[ENA]
¡û
>W1910229743
FODV01000002
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
20874
20946
+
Ala
GGC
[ENA]
¡û
>W1910229744
FODV01000002
Euryarchaeota
Halogranum amylolyticum CGMCC 1.10121 [FODV]
23389
23460
+
Ala
GGC
[ENA]
¡û
>W1910229801
FOFD01000002
Euryarchaeota
Natrinema salaciae DSM 25055 [FOFD]
883586
883658
+
Ala
GGC
[ENA]
¡û
>W1910229879
FOIC01000001
Euryarchaeota
Natrinema hispanicum CDM_6 [FOIC]
172607
172535
-
Ala
GGC
[ENA]
¡û
>W1910568492
JDTG01000005
Euryarchaeota
Natrinema thermotolerans A29 [JDTG]
93886
93958
+
Ala
GGC
[ENA]
¡û
>W1910569080
JHUT02000008
Euryarchaeota
Natrinema mahii H13 [JHUT]
138135
138063
-
Ala
GGC
[ENA]
¡û
>W1910572716
JNCS01000006
Euryarchaeota
Natrinema altunense AJ2 [JNCS]
160194
160265
+
Ala
GGC
[ENA]
¡û
>W1910573497
JPES01000120
Euryarchaeota
Haloferax sp. ATB1 [JPES]
17435
17363
-
Ala
GGC
[ENA]
¡û
>W1910617608
LIUF01000005
Euryarchaeota
Haloarcula rubripromontorii SL3 [LIUF]
125621
125692
+
Ala
GGC
[ENA]
¡û
>W1910646118
LWLN01000001
Euryarchaeota
Natrinema saccharevitans AB14 [LWLN]
2231659
2231731
+
Ala
GGC
[ENA]
¡û
>W1911433970
NXNI01000001
Euryarchaeota
Natrinema ejinorense JCM 13890 [NXNI]
456516
456588
+
Ala
GGC
[ENA]
¡û
>W1911629774
PSYS01000001
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
546663
546592
-
Ala
GGC
[ENA]
¡û
>W1911629775
PSYS01000001
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
546111
546040
-
Ala
GGC
[ENA]
¡û
>W1911629807
PSYT01000001
Euryarchaeota
Haloferax sp. Atlit-24N [PSYT]
1106431
1106503
+
Ala
GGC
[ENA]
¡û
>W1911629808
PSYT01000001
Euryarchaeota
Haloferax sp. Atlit-24N [PSYT]
1107255
1107326
+
Ala
GGC
[ENA]
¡û
>W1911629877
PSYU01000002
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
557237
557166
-
Ala
GGC
[ENA]
¡û
>W1911629878
PSYU01000002
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
555537
555465
-
Ala
GGC
[ENA]
¡û
>W1911629905
PSYV01000001
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
816957
817028
+
Ala
GGC
[ENA]
¡û
>W1911629906
PSYV01000001
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
818657
818728
+
Ala
GGC
[ENA]
¡û
>W1911629970
PSYW01000001
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
315598
315527
-
Ala
GGC
[ENA]
¡û
>W1911629971
PSYW01000001
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
313277
313206
-
Ala
GGC
[ENA]
¡û
>W1911630005
PSYX01000001
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
816957
817028
+
Ala
GGC
[ENA]
¡û
>W1911630006
PSYX01000001
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
818657
818728
+
Ala
GGC
[ENA]
¡û
>W1911630057
PSYY01000001
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
1183874
1183945
+
Ala
GGC
[ENA]
¡û
>W1911630058
PSYY01000001
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
1186785
1186856
+
Ala
GGC
[ENA]
¡û
>W1911655695
QEQI01000001
Euryarchaeota
Haloferax sp. Atlit-48N [QEQI]
543697
543625
-
Ala
GGC
[ENA]
¡û
>W1911655696
QEQI01000001
Euryarchaeota
Haloferax sp. Atlit-48N [QEQI]
542874
542803
-
Ala
GGC
[ENA]
¡û
>W1911655741
QEQJ01000001
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
576950
576879
-
Ala
GGC
[ENA]
¡û
>W1911655742
QEQJ01000001
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
575490
575419
-
Ala
GGC
[ENA]
¡û
>W1911682232
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
1235681
1235610
-
Ala
GGC
[ENA]
¡û
>W1911709173
QPHM01000001
Euryarchaeota
Haloplanus salinus JCM 18368 [QPHM]
2525814
2525742
-
Ala
GGC
[ENA]
¡û
>W1911709458
QPLN01000001
Euryarchaeota
Haloarcula sp. Atlit-120R [QPLN]
115700
115629
-
Ala
GGC
[ENA]
¡û
>W1911709486
QPLO01000001
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
1106431
1106503
+
Ala
GGC
[ENA]
¡û
>W1911709487
QPLO01000001
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
1107255
1107326
+
Ala
GGC
[ENA]
¡û
>W1911709535
QPLP01000001
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
1106431
1106503
+
Ala
GGC
[ENA]
¡û
>W1911709536
QPLP01000001
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
1107255
1107326
+
Ala
GGC
[ENA]
¡û
>W1911709595
QPLQ01000001
Euryarchaeota
Haloarcula sp. Atlit-47R [QPLQ]
115872
115801
-
Ala
GGC
[ENA]
¡û
>W1911709616
QPLR01000001
Euryarchaeota
Halobellus sp. Atlit-31R [QPLR]
265419
265490
+
Ala
GGC
[ENA]
¡û
>W1911769960
QXIJ01000001
Euryarchaeota
Halobellus sp. Atlit-38R [QXIJ]
292448
292377
-
Ala
GGC
[ENA]
¡û
>W1911770048
QXIK01000010
Euryarchaeota
Haloarcula sp. Atlit-7R [QXIK]
41666
41737
+
Ala
GGC
[ENA]
¡û
>W1610000781
ABTX01000001
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
385906
385832
-
Ala
GGC
[ENA]
¡û
>W1610004120
AGIN01000002
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AGIN]
40250
40321
+
Ala
GGC
[ENA]
¡û
>W1610005383
AJVG01000014
Euryarchaeota
Natrinema sp. J7-1 [AJVG]
8477
8406
-
Ala
GGC
[ENA]
¡û
>W1610011531
ANPG01000571
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
381
310
-
Ala
GGC
[ENA]
¡û
>W1610011535
ANPG01000669
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
1002
1073
+
Ala
GGC
[ENA]
¡û
>W1610011787
AOHT01000051
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
203218
203292
+
Ala
GGC
[ENA]
¡û
>W1610011816
AOHU01000091
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
222525
222453
-
Ala
GGC
[ENA]
¡û
>W1610011817
AOHU01000091
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
221675
221604
-
Ala
GGC
[ENA]
¡û
>W1610011964
AOHX01000042
Euryarchaeota
Natronorubrum sulfidifaciens JCM 14089 [AOHX]
103893
103965
+
Ala
GGC
[ENA]
¡û
>W1610011973
AOHY01000002
Euryarchaeota
Natronorubrum bangense JCM 10635 [AOHY]
121321
121395
+
Ala
GGC
[ENA]
¡û
>W1610012196
AOID01000007
Euryarchaeota
Natrinema versiforme JCM 10478 [AOID]
10671
10599
-
Ala
GGC
[ENA]
¡û
>W1610012254
AOIE01000076
Euryarchaeota
Natrinema pellirubrum DSM 15624 [AOIE]
158770
158841
+
Ala
GGC
[ENA]
¡û
>W1610012297
AOII01000046
Euryarchaeota
Natrinema pallidum DSM 3751 [AOII]
66185
66257
+
Ala
GGC
[ENA]
¡û
>W1610012364
AOIJ01000085
Euryarchaeota
Natrinema gari JCM 14663 [AOIJ]
8163
8091
-
Ala
GGC
[ENA]
¡û
>W1610012372
AOIK01000006
Euryarchaeota
Natrinema altunense JCM 12890 [AOIK]
5087
5016
-
Ala
GGC
[ENA]
¡û
>W1610012424
AOIL01000028
Euryarchaeota
Natrialba taiwanensis DSM 12281 [AOIL]
65889
65818
-
Ala
GGC
[ENA]
¡û
>W1610012564
AOIO01000033
Euryarchaeota
Natrialba asiatica DSM 12278 [AOIO]
17207
17279
+
Ala
GGC
[ENA]
¡û
>W1610012592
AOIP01000015
Euryarchaeota
Natrialba aegyptia DSM 13077 [AOIP]
106584
106656
+
Ala
GGC
[ENA]
¡û
>W1610012671
AOIR01000046
Euryarchaeota
Natrinema thermotolerans DSM 11522 [AOIR]
38546
38617
+
Ala
GGC
[ENA]
¡û
>W1610012767
AOIT01000017
Euryarchaeota
Natrinema limicola JCM 13563 [AOIT]
9713
9641
-
Ala
GGC
[ENA]
¡û
>W1610013457
AOLD01000018
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
222028
221954
-
Ala
GGC
[ENA]
¡û
>W1610013458
AOLD01000018
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
221292
221221
-
Ala
GGC
[ENA]
¡û
>W1610013529
AOLE01000019
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
364479
364405
-
Ala
GGC
[ENA]
¡û
>W1610013530
AOLE01000019
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
363743
363672
-
Ala
GGC
[ENA]
¡û
>W1610013551
AOLF01000013
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
247464
247538
+
Ala
GGC
[ENA]
¡û
>W1610013552
AOLF01000013
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
248200
248271
+
Ala
GGC
[ENA]
¡û
>W1610013620
AOLG01000012
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
2424
2495
+
Ala
GGC
[ENA]
¡û
>W1610013621
AOLG01000012
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
5337
5409
+
Ala
GGC
[ENA]
¡û
>W1610013676
AOLH01000017
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
104440
104369
-
Ala
GGC
[ENA]
¡û
>W1610013678
AOLH01000017
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
103241
103170
-
Ala
GGC
[ENA]
¡û
>W1610013702
AOLI01000007
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
53165
53236
+
Ala
GGC
[ENA]
¡û
>W1610013703
AOLI01000007
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
53798
53869
+
Ala
GGC
[ENA]
¡û
>W1610013799
AOLJ01000025
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
11959
11885
-
Ala
GGC
[ENA]
¡û
>W1610013800
AOLJ01000025
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
10499
10428
-
Ala
GGC
[ENA]
¡û
>W1610013821
AOLK01000015
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
258550
258621
+
Ala
GGC
[ENA]
¡û
>W1610013822
AOLK01000015
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
265621
265692
+
Ala
GGC
[ENA]
¡û
>W1610013859
AOLL01000010
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
22092
22021
-
Ala
GGC
[ENA]
¡û
>W1610013860
AOLL01000010
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
21168
21097
-
Ala
GGC
[ENA]
¡û
>W1610013861
AOLL01000010
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
21079
21006
-
Ala
GGC
[ENA]
¡û
>W1610013913
AOLM01000003
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
127759
127833
+
Ala
GGC
[ENA]
¡û
>W1610013914
AOLM01000003
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
128609
128680
+
Ala
GGC
[ENA]
¡û
>W1610014002
AOLN01000018
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
214379
214307
-
Ala
GGC
[ENA]
¡û
>W1610014003
AOLN01000018
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
213743
213671
-
Ala
GGC
[ENA]
¡û
>W1610014013
AOLO01000006
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
118920
118848
-
Ala
GGC
[ENA]
¡û
>W1610014014
AOLO01000006
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
118050
117976
-
Ala
GGC
[ENA]
¡û
>W1610014102
AOLP01000019
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
70443
70369
-
Ala
GGC
[ENA]
¡û
>W1610014153
AOLQ01000067
Euryarchaeota
Haloarcula vallismortis ATCC 29715 [AOLQ]
109945
110016
+
Ala
GGC
[ENA]
¡û
>W1610014164
AOLR01000002
Euryarchaeota
Haloarcula sinaiiensis ATCC 33800 [AOLR]
103409
103338
-
Ala
GGC
[ENA]
¡û
>W1610014206
AOLS01000008
Euryarchaeota
Haloarcula californiae ATCC 33799 [AOLS]
104410
104339
-
Ala
GGC
[ENA]
¡û
>W1610014289
AOLW01000050
Euryarchaeota
Haloarcula amylolytica JCM 13557 [AOLW]
72918
72989
+
Ala
GGC
[ENA]
¡û
>W1610014342
AOLX01000027
Euryarchaeota
Haloarcula argentinensis DSM 12282 [AOLX]
138314
138385
+
Ala
GGC
[ENA]
¡û
>W1610014377
AOLY01000009
Euryarchaeota
Haloarcula japonica DSM 6131 [AOLY]
235457
235528
+
Ala
GGC
[ENA]
¡û
>W1610019091
ARPX01000176
Euryarchaeota
Haloquadratum walsbyi J07HQW1 [ARPX]
46827
46898
+
Ala
GGC
[ENA]
¡û
>W1610024383
ATYM01000002
Euryarchaeota
Haloplanus natans DSM 17983 [ATYM]
269617
269546
-
Ala
GGC
[ENA]
¡û
>W1610061922
BCNA01000001
Euryarchaeota
Haloarcula sp. CBA1128 [BCNA]
1251449
1251378
-
Ala
GGC
[ENA]
¡û
>W1610061943
BCNB01000006
Euryarchaeota
Haloarcula sp. CBA1127 [BCNB]
1689928
1689999
+
Ala
GGC
[ENA]
¡û
>W1610682200
LKMM01000103
Euryarchaeota
Natrialbaceae archaeon B1-Br10_E2g27 [LKMM]
73
2
-
Ala
GGC
[ENA]
¡û
>W1610784322
LOEP01000056
Euryarchaeota
Haloferax sp. Q22 [LOEP]
87594
87522
-
Ala
GGC
[ENA]
¡û
>W1610784323
LOEP01000056
Euryarchaeota
Haloferax sp. Q22 [LOEP]
85940
85869
-
Ala
GGC
[ENA]
¡û
>W1610799863
LOPV01000612
Euryarchaeota
Haloferax profundi SB29 [LOPV]
6053
6127
+
Ala
GGC
[ENA]
¡û
>W1610799883
LOPW01000028
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
113907
113978
+
Ala
GGC
[ENA]
¡û
>W1610799884
LOPW01000028
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
116209
116281
+
Ala
GGC
[ENA]
¡û
>W1610881020
LRHL01000012
Euryarchaeota
Haloarcula sp. K1 [LRHL]
11134
11063
-
Ala
GGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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