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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655458 (90 seq.)
>A171000758
CP001687
Euryarchaeota
Halorhabdus utahensis DSM 12940 [CP001687]
788395
788323
-
Ala
CGC
-
¡û
>A171000830
CP001690
Euryarchaeota
Halogeometricum borinquense DSM 11551 PR 3 [CP001690]
2679773
2679702
-
Ala
CGC
-
¡û
>A171001157
CP001868
Euryarchaeota
Haloferax mediterranei ATCC 33500 CGMCC 1.2087 [CP001868]
327612
327683
+
Ala
CGC
-
¡û
>A171001382
CP001956
Euryarchaeota
Haloferax volcanii DS2 [CP001956]
329507
329578
+
Ala
CGC
-
¡û
>A171006192
CP011947
Euryarchaeota
Haloferax gibbonsii ARA6 [CP011947]
312106
312177
+
Ala
CGC
-
¡û
>A171007260
HF571520
Euryarchaeota
Halorhabdus tiamatea SARL4B type strain: SARL4B [HF571520]
650320
650248
-
Ala
CGC
-
¡û
>WENV170661038
JXWU01087921
[JXWU] soil metagenome; rice field; organic control Plot
396
325
-
Ala
CGC
[ENA]
¢þ
>W1910006688
BBJO01000003
Euryarchaeota
Halobellus rufus CBA1103 [BBJO]
210767
210696
-
Ala
CGC
[ENA]
¡û
>W1910186232
CCDK010000002
Euryarchaeota
Haloferax prahovense Arc-Hr [CCDK]
927633
927704
+
Ala
CGC
[ENA]
¡û
>W1910193551
CSTE01000002
Euryarchaeota
Haloferax massiliensis Arc-Hr [CSTE]
1729515
1729443
-
Ala
CGC
[ENA]
¡û
>W1910226805
FNBO01000023
Euryarchaeota
Halorubrum xinjiangense CGMCC 1.3527 [FNBO]
15776
15704
-
Ala
CGC
[ENA]
¡û
>W1910227115
FNKQ01000003
Euryarchaeota
Halopelagius longus CGMCC 1.12397 [FNKQ]
439132
439061
-
Ala
CGC
[ENA]
¡û
>W1910228466
FNPC01000002
Euryarchaeota
Halopenitus persicus DC30,IBRC 10041,KCTC 4046 [FNPC]
419238
419167
-
Ala
CGC
[ENA]
¡û
>W1910229356
FNWU01000001
Euryarchaeota
Halopenitus malekzadehii IBRC-M10418 [FNWU]
283214
283142
-
Ala
CGC
[ENA]
¡û
>W1910229621
FOAD01000002
Euryarchaeota
Haloferax larsenii CDM_5 [FOAD]
21790
21718
-
Ala
CGC
[ENA]
¡û
>W1910230652
FOYN01000002
Euryarchaeota
Halorubrum sodomense RD 26 [FOYN]
213403
213475
+
Ala
CGC
[ENA]
¡û
>W1910230681
FOYS01000001
Euryarchaeota
Halogeometricum limi CGMCC 1.8711 [FOYS]
486464
486535
+
Ala
CGC
[ENA]
¡û
>W1910230728
FOYT01000001
Euryarchaeota
Halogeometricum rufum CGMCC 1.7736 [FOYT]
527000
527072
+
Ala
CGC
[ENA]
¡û
>W1910546987
FZNK01000007
Euryarchaeota
Halorubrum ezzemoulense DSM 19316 [FZNK]
39109
39180
+
Ala
CGC
[ENA]
¡û
>W1910573483
JPES01000073
Euryarchaeota
Haloferax sp. ATB1 [JPES]
10729
10801
+
Ala
CGC
[ENA]
¡û
>W1910573493
JPES01000108
Euryarchaeota
Haloferax sp. ATB1 [JPES]
4542
4613
+
Ala
CGC
[ENA]
¡û
>W1910617572
LIST01000005
Euryarchaeota
Halorubrum tropicale 5 [LIST]
72869
72941
+
Ala
CGC
[ENA]
¡û
>W1910873639
NDWV01000005
Euryarchaeota
Halorubrum ezzemoulense DSM 19316 [NDWV]
38931
39002
+
Ala
CGC
[ENA]
¡û
>W1910880427
NEDJ01000006
Euryarchaeota
Halorubrum ezzemoulense DSM 17463 [NEDJ]
73588
73517
-
Ala
CGC
[ENA]
¡û
>W1910891340
NEWI01000046
Euryarchaeota
Halorubrum sp. SD612 [NEWI]
2116
2187
+
Ala
CGC
[ENA]
¡û
>W1910891413
NEWJ01000056
Euryarchaeota
Halorubrum sp. SD683 [NEWJ]
7934
7863
-
Ala
CGC
[ENA]
¡û
>W1910911693
NHNZ01000085
Euryarchaeota
Halorubrum sp. C191 [NHNZ]
7290
7219
-
Ala
CGC
[ENA]
¡û
>W1910911795
NHOB01001124
Euryarchaeota
Halorubrum sp. C3 [NHOB]
579
508
-
Ala
CGC
[ENA]
¡û
>W1910911949
NHOV01000730
Euryarchaeota
Halorubrum ezzemoulense LG1 [NHOV]
2631
2560
-
Ala
CGC
[ENA]
¡û
>W1910912115
NHOZ01000022
Euryarchaeota
Halorubrum ezzemoulense Ga36 [NHOZ]
26477
26406
-
Ala
CGC
[ENA]
¡û
>W1910912159
NHPA01000038
Euryarchaeota
Halorubrum ezzemoulense Ga2p [NHPA]
119319
119248
-
Ala
CGC
[ENA]
¡û
>W1910912219
NHPB01000081
Euryarchaeota
Halorubrum ezzemoulense G37 [NHPB]
40551
40622
+
Ala
CGC
[ENA]
¡û
>W1910912289
NHPD01000058
Euryarchaeota
Halorubrum ezzemoulense Ec15 [NHPD]
82412
82341
-
Ala
CGC
[ENA]
¡û
>W1911629768
PSYS01000001
Euryarchaeota
Haloferax sp. Atlit-47N [PSYS]
1277364
1277293
-
Ala
CGC
[ENA]
¡û
>W1911629801
PSYT01000001
Euryarchaeota
Haloferax sp. Atlit-24N [PSYT]
403515
403586
+
Ala
CGC
[ENA]
¡û
>W1911629884
PSYU01000003
Euryarchaeota
Haloferax sp. Atlit-19N [PSYU]
601995
601924
-
Ala
CGC
[ENA]
¡û
>W1911629899
PSYV01000001
Euryarchaeota
Haloferax sp. Atlit-16N [PSYV]
78417
78489
+
Ala
CGC
[ENA]
¡û
>W1911629964
PSYW01000001
Euryarchaeota
Haloferax sp. Atlit-12N [PSYW]
1120847
1120776
-
Ala
CGC
[ENA]
¡û
>W1911629999
PSYX01000001
Euryarchaeota
Haloferax sp. Atlit-10N [PSYX]
78417
78489
+
Ala
CGC
[ENA]
¡û
>W1911630051
PSYY01000001
Euryarchaeota
Haloferax sp. Atlit-4N [PSYY]
392322
392393
+
Ala
CGC
[ENA]
¡û
>W1911655689
QEQI01000001
Euryarchaeota
Haloferax sp. Atlit-48N [QEQI]
1258919
1258848
-
Ala
CGC
[ENA]
¡û
>W1911655735
QEQJ01000001
Euryarchaeota
Haloferax sp. Atlit-6N [QEQJ]
1356171
1356099
-
Ala
CGC
[ENA]
¡û
>W1911682225
QKMU01000001
Euryarchaeota
Halogeometricum sp. wsp3 [QKMU]
2099163
2099092
-
Ala
CGC
[ENA]
¡û
>W1911709480
QPLO01000001
Euryarchaeota
Haloferax sp. Atlit-109R [QPLO]
403515
403586
+
Ala
CGC
[ENA]
¡û
>W1911709529
QPLP01000001
Euryarchaeota
Haloferax sp. Atlit-105R [QPLP]
403515
403586
+
Ala
CGC
[ENA]
¡û
>W1911709698
QPLS01000006
Euryarchaeota
Halorubrum sp. Atlit-28R [QPLS]
96565
96493
-
Ala
CGC
[ENA]
¡û
>W1911709713
QPLT01000001
Euryarchaeota
Halorubrum sp. Atlit-26R [QPLT]
230042
230114
+
Ala
CGC
[ENA]
¡û
>W1911709788
QPLU01000003
Euryarchaeota
Halorubrum sp. Atlit-9R [QPLU]
222082
222153
+
Ala
CGC
[ENA]
¡û
>W1911709842
QPLV01000004
Euryarchaeota
Halorubrum sp. Atlit-8R [QPLV]
219908
219979
+
Ala
CGC
[ENA]
¡û
>W1911717769
QQRR01000001
Euryarchaeota
Haloprofundus halophilus NK23 [QQRR]
1375675
1375746
+
Ala
CGC
[ENA]
¡û
>W1911717839
QQST01000001
Euryarchaeota
Halopelagius longus BC12-B1 [QQST]
1460969
1460898
-
Ala
CGC
[ENA]
¡û
>W1911749397
QWGG01000001
Euryarchaeota
Halosimplex salinum YPL4 [QWGG]
21159
21088
-
Ala
CGC
[ENA]
¡û
>W1610000771
ABTX01000001
Euryarchaeota
Halogeometricum borinquense DSM 11551 [ABTX]
1065828
1065757
-
Ala
CGC
[ENA]
¡û
>W1610000857
ABTZ01000001
Euryarchaeota
Halorhabdus utahensis DSM 12940 [ABTZ]
1517593
1517519
-
Ala
CGC
[ENA]
¡û
>W1610003261
AFNT02000006
Euryarchaeota
Halorhabdus tiamatea SARL4B [AFNT]
106445
106373
-
Ala
CGC
[ENA]
¡û
>W1610005959
ALWQ01000008
Euryarchaeota
Halorubrum sp. T3 [ALWQ]
233917
233989
+
Ala
CGC
[ENA]
¡û
>W1610011509
ANPG01000133
Euryarchaeota
Haloferax sp. BAB-2207 BAB2207 [ANPG]
1487
1561
+
Ala
CGC
[ENA]
¡û
>W1610011748
AOHT01000005
Euryarchaeota
Halogeometricum borinquense DSM 11551 [AOHT]
5977
5906
-
Ala
CGC
[ENA]
¡û
>W1610011834
AOHU01000102
Euryarchaeota
Haloferax volcanii DS2 [AOHU]
32137
32063
-
Ala
CGC
[ENA]
¡û
>W1610012832
AOIU01000036
Euryarchaeota
Halosimplex carlsbadense 2002/9/1 [AOIU]
184516
184445
-
Ala
CGC
[ENA]
¡û
>W1610012865
AOIV01000026
Euryarchaeota
Halogeometricum pallidum JCM 14848 [AOIV]
33956
34030
+
Ala
CGC
[ENA]
¡û
>W1610012911
AOIW01000064
Euryarchaeota
Halorubrum terrestre JCM 10247 [AOIW]
232217
232288
+
Ala
CGC
[ENA]
¡û
>W1610012957
AOJD01000047
Euryarchaeota
Halorubrum tebenquichense DSM 14210 [AOJD]
77348
77419
+
Ala
CGC
[ENA]
¡û
>W1610013031
AOJF01000034
Euryarchaeota
Halorubrum litoreum JCM 13561 [AOJF]
50884
50813
-
Ala
CGC
[ENA]
¡û
>W1610013207
AOJJ01000057
Euryarchaeota
Halorubrum arcis JCM 13916 [AOJJ]
193880
193809
-
Ala
CGC
[ENA]
¡û
>W1610013271
AOJK01000064
Euryarchaeota
Halorubrum californiense DSM 19288 [AOJK]
108318
108390
+
Ala
CGC
[ENA]
¡û
>W1610013285
AOJL01000007
Euryarchaeota
Halorubrum coriense DSM 10284 [AOJL]
28789
28860
+
Ala
CGC
[ENA]
¡û
>W1610013355
AOJM01000072
Euryarchaeota
Halorubrum distributum JCM 9100 [AOJM]
1862
1933
+
Ala
CGC
[ENA]
¡û
>W1610013408
AOJN01000065
Euryarchaeota
Halorubrum distributum JCM 10118 [AOJN]
67596
67667
+
Ala
CGC
[ENA]
¡û
>W1610013418
AOJO01000024
Euryarchaeota
Halorubrum hochstenium ATCC 700873 [AOJO]
127106
127034
-
Ala
CGC
[ENA]
¡û
>W1610013472
AOLD01000031
Euryarchaeota
Haloferax sp. ATCC BAA-646 [AOLD]
164345
164274
-
Ala
CGC
[ENA]
¡û
>W1610013542
AOLE01000023
Euryarchaeota
Haloferax sp. ATCC BAA-645 [AOLE]
164331
164260
-
Ala
CGC
[ENA]
¡û
>W1610013588
AOLF01000035
Euryarchaeota
Haloferax sp. ATCC BAA-644 [AOLF]
37181
37252
+
Ala
CGC
[ENA]
¡û
>W1610013604
AOLG01000008
Euryarchaeota
Haloferax prahovense DSM 18310 [AOLG]
392620
392691
+
Ala
CGC
[ENA]
¡û
>W1610013692
AOLH01000025
Euryarchaeota
Haloferax lucentense DSM 14919 [AOLH]
180005
179931
-
Ala
CGC
[ENA]
¡û
>W1610013735
AOLI01000025
Euryarchaeota
Haloferax larsenii JCM 13917 [AOLI]
88418
88489
+
Ala
CGC
[ENA]
¡û
>W1610013761
AOLJ01000011
Euryarchaeota
Haloferax gibbonsii ATCC 33959 [AOLJ]
553268
553194
-
Ala
CGC
[ENA]
¡û
>W1610013805
AOLK01000011
Euryarchaeota
Haloferax elongans ATCC BAA-1513 [AOLK]
323140
323211
+
Ala
CGC
[ENA]
¡û
>W1610013883
AOLL01000013
Euryarchaeota
Haloferax alexandrinus JCM 10717 [AOLL]
34455
34381
-
Ala
CGC
[ENA]
¡û
>W1610013934
AOLM01000018
Euryarchaeota
Haloferax sulfurifontis ATCC BAA-897 [AOLM]
202618
202544
-
Ala
CGC
[ENA]
¡û
>W1610013977
AOLN01000011
Euryarchaeota
Haloferax mucosum ATCC BAA-1512 [AOLN]
129082
129008
-
Ala
CGC
[ENA]
¡û
>W1610014026
AOLO01000007
Euryarchaeota
Haloferax mediterranei ATCC 33500 [AOLO]
554345
554274
-
Ala
CGC
[ENA]
¡û
>W1610014063
AOLP01000009
Euryarchaeota
Haloferax denitrificans ATCC 35960 [AOLP]
402439
402510
+
Ala
CGC
[ENA]
¡û
>W1610021313
ATCR02000003
Euryarchaeota
haloarchaeon 3A1-DGR 3A1_DGR [ATCR]
250838
250767
-
Ala
CGC
[ENA]
¡û
>W1610024318
ATXS01000007
Euryarchaeota
Halorubrum ezzemoulense DSM 17463 [ATXS]
38846
38917
+
Ala
CGC
[ENA]
¡û
>W1610675801
LKIR01000139
Euryarchaeota
Haloparvum sedimenti DYS4 [LKIR]
92073
92002
-
Ala
CGC
[ENA]
¡û
>W1610784294
LOEP01000016
Euryarchaeota
Haloferax sp. Q22 [LOEP]
172084
172013
-
Ala
CGC
[ENA]
¡û
>W1610799787
LOPU01000016
Euryarchaeota
Haloprofundus marisrubri SB9 [LOPU]
180266
180195
-
Ala
CGC
[ENA]
¡û
>W1610799833
LOPV01000093
Euryarchaeota
Haloferax profundi SB29 [LOPV]
9131
9057
-
Ala
CGC
[ENA]
¡û
>W1610799895
LOPW01000056
Euryarchaeota
Haloferax marisrubri SB3 [LOPW]
32982
32908
-
Ala
CGC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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