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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655530 (49 seq.)
>W1711326602
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
231643
231717
+
Thr
GGT
[ENA]
¡û
>W1711326629
MBFM01000004
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
214559
214485
-
Thr
GGT
[ENA]
¡û
>W1711394656
MEQN01000009
Betaproteobacteria
Betaproteobacteria bacterium RBG_16_58_11 [MEQN]
7012
7086
+
Thr
GGT
[ENA]
¡û
>C171085154
CP018839
Betaproteobacteria
Thauera chlorobenzoica 3CB1 [CP018839]
1873551
1873625
+
Thr
GGT
-
¡û
>C171116308
CP021138
Betaproteobacteria
Sulfuriferula sp. AH1 [CP021138]
2422432
2422358
-
Thr
GGT
-
¡û
>W131050859
AMXD01000003
Betaproteobacteria
Thauera aminoaromatica S2 [AMXD]
30021
30095
+
Thr
GGT
[ENA]
¡û
>W131050954
AMXF01000002
Betaproteobacteria
Thauera phenylacetica B4P [AMXF]
30540
30614
+
Thr
GGT
[ENA]
¡û
>W131169672
AREX01000003
Betaproteobacteria
Uliginosibacterium gangwonense DSM 18521 [AREX]
403980
404054
+
Thr
GGT
[ENA]
¡û
>W131176299
ARJX01000048
Betaproteobacteria
Aromatoleum toluclasticum ATCC 700605 [ARJX]
119846
119920
+
Thr
GGT
[ENA]
¡û
>C001306
AM406670
Betaproteobacteria
Azoarcus olearius BH72 [AM406670]
3760760
3760686
-
Thr
GGT
[Ensembl]
¡û
>WENV180000106
CZVZ01000142
[CZVZ] metagenome; unknown
1170
1244
+
Thr
GGT
[ENA]
¢þ
>WENV180295727
OBIZ01269253
[OBIZ] soil metagenome; soil
147
221
+
Thr
GGT
[ENA]
¢þ
>WENV180298098
OBJA01166972
[OBJA] soil metagenome; sediment, water from around vicinity
277
351
+
Thr
GGT
[ENA]
¢þ
>WENV180351427
OBLQ010055700
[OBLQ] soil metagenome; soil
165
91
-
Thr
GGT
[ENA]
¢þ
>WENV181173188
OEIV011262800
[OEIV] activated sludge metagenome; Wastewater treatment plant of a petroleum refinery complex
192
118
-
Thr
GGT
[ENA]
¢þ
>W08007995
ABKT01000005
Betaproteobacteria
Thauera sp. MZ1T [ABKT] MZ1T [ABKT]
16417
16346
-
Thr
GGT
[ENA]
¡û
>WENV170000197
AERA01022797
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
28
102
+
Thr
GGT
[ENA]
¢þ
>WENV170650437
JRYE01000344
[JRYE] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 4 ppm DO
436
362
-
Thr
GGT
[ENA]
¢þ
>WENV170652543
JRYH01005587
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
1395
1469
+
Thr
GGT
[ENA]
¢þ
>WENV170652548
JRYH01005615
[JRYH] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater generated at dyes and
429
355
-
Thr
GGT
[ENA]
¢þ
>WENV170653016
JRYI01000849
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
6523
6597
+
Thr
GGT
[ENA]
¢þ
>WENV170653160
JRYI01008633
[JRYI] activated sludge metagenome; activated biomass in a lab-scale reactor treating industrial wastewater at 1 ppm DO
1607
1681
+
Thr
GGT
[ENA]
¢þ
>WENV170658110
JTFP01055677
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
202
276
+
Thr
GGT
[ENA]
¢þ
>WENV170658354
JTFP01092113
[JTFP] activated sludge metagenome; sludge from laboratory unaugmented bioreactor treating industrial wastewater
180
106
-
Thr
GGT
[ENA]
¢þ
>WENV170961583
MLJW01000182
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
52394
52468
+
Thr
GGT
[ENA]
¢þ
>C181081471
CP023439
Betaproteobacteria
Thauera sp. K11 [CP023439]
3330495
3330421
-
Thr
GGT
-
¡û
>C181121176
CP025682
Betaproteobacteria
Pseudazoarcus pumilus SY39 [CP025682]
616513
616587
+
Thr
GGT
-
¡û
>C181164184
CP028339
Betaproteobacteria
Thauera aromatica K172 [CP028339]
2930702
2930628
-
Thr
GGT
-
¡û
>C191019174
CP021731
Betaproteobacteria
Azoarcus sp. DN11 [CP021731]
4217822
4217748
-
Thr
GGT
-
¡û
>C191022903
CP022958
Betaproteobacteria
Azoarcus sp. DD4 [CP022958]
4521586
4521512
-
Thr
GGT
-
¡û
>W1910126446
BGOW01000039
Betaproteobacteria
Sulfuriferula multivorans TTN [BGOW]
17422
17496
+
Thr
GGT
[ENA]
¡û
>W1910128288
BHGL01000003
Betaproteobacteria
Sulfuriferula thiophila mst6 [BHGL]
183
109
-
Thr
GGT
[ENA]
¡û
>W1910698932
MEQR01000110
Betaproteobacteria
Betaproteobacteria bacterium RBG_19FT_COMBO_58_11 [MEQR]
1064
990
-
Thr
GGT
[ENA]
¡û
>W1810444924
PZKC01000013
Betaproteobacteria
Pseudothauera lacus D20 [PZKC]
67659
67585
-
Thr
GGT
[ENA]
¡û
>W1810679131
QKOE01000001
Betaproteobacteria
Parazoarcus communis SWub3 [QKOE]
318386
318460
+
Thr
GGT
[ENA]
¡û
>C151076188
CP011072
Betaproteobacteria
Azoarcus sp. CIB [CP011072]
4508468
4508394
-
Thr
GGT
-
¡û
>C10113197
CP001281
Betaproteobacteria
Thauera aminoaromatica MZ1T [CP001281]
3662094
3662020
-
Thr
GGT
[Ensembl]
¡û
>WENV11100555
AERA01022797
[AERA] activated sludge metagenome; activated biomass of an industrial wastewater treatment plant
28
102
+
Thr
GGT
[ENA]
¡û
>W1511398302
JTDM01000018
Betaproteobacteria
Thauera sp. SWB20 [JTDM]
246905
246831
-
Thr
GGT
[ENA]
¡û
>W1511580986
LARU01000002
Betaproteobacteria
Azoarcus sp. PA01 [LARU]
2001119
2001193
+
Thr
GGT
[ENA]
¡û
>W11185924
CACR01001752
Betaproteobacteria
Thauera selenatis AX [CACR]
214
140
-
Thr
GGT
[ENA]
¡û
>C161095094
CP016210
Betaproteobacteria
Azoarcus olearius DQS-4 [CP016210]
3847399
3847325
-
Thr
GGT
-
¡û
>W1610042941
BAZL01001277
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
614
688
+
Thr
GGT
[ENA]
¡û
>C131000316
AP012304
Betaproteobacteria
Azoarcus sp. KH32C [AP012304]
4440040
4439966
-
Thr
GGT
[Ensembl]
¡û
>W1611063338
MBFM01000003
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
231643
231717
+
Thr
GGT
[ENA]
¡û
>W1611063365
MBFM01000004
Betaproteobacteria
Thauera phenolivorans ZV-1-C [MBFM]
214559
214485
-
Thr
GGT
[ENA]
¡û
>W1710040101
BAZL01001277
Betaproteobacteria
Thauera sp. DNT-1 [BAZL]
614
688
+
Thr
GGT
[ENA]
¡û
>W1710539472
FNVJ01000020
Betaproteobacteria
Thauera chlorobenzoica [FNVJ]
50352
50426
+
Thr
GGT
[ENA]
¡û
>W1710595750
FTMD01000016
Betaproteobacteria
Aromatoleum tolulyticum tolulyticus [FTMD]
105854
105928
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK