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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655561 (31 seq.)
>WENV180124093
OASX01001889
[OASX] human gut metagenome; faeces
4357
4283
-
Gly
TCC
[ENA]
¢þ
>WENV183063015
OLIF01000415
[OLIF] metagenome; faeces
3845
3919
+
Gly
TCC
[ENA]
¢þ
>C181099007
CP024282
Gammaproteobacteria
Escherichia albertii 2014C-4356 [CP024282]
3291162
3291236
+
Gly
TCC
-
¡û
>C181192778
CP030781
Gammaproteobacteria
Escherichia albertii 07-3866 [CP030781]
2026665
2026591
-
Gly
TCC
-
¡û
>C181192873
CP030783
Gammaproteobacteria
Escherichia albertii 2012EL-1823B [CP030783]
2310728
2310654
-
Gly
TCC
-
¡û
>C191120591
CP034162
Gammaproteobacteria
Escherichia albertii 06-3542 [CP034162]
630277
630351
+
Gly
TCC
-
¡û
>C191120762
CP034166
Gammaproteobacteria
Escherichia albertii 2014C-4015 [CP034166]
703100
703026
-
Gly
TCC
-
¡û
>W1910038451
BEGZ01000005
Gammaproteobacteria
Escherichia albertii Hiroshima3582 [BEGZ]
1611
1537
-
Gly
TCC
[ENA]
¡û
>W1910175863
BJCT01000059
Gammaproteobacteria
Escherichia albertii ZAH-1-3 [BJCT]
4708
4782
+
Gly
TCC
[ENA]
¡û
>W1910176007
BJCV01000106
Gammaproteobacteria
Escherichia albertii ZAI-52-1 [BJCV]
1886
1812
-
Gly
TCC
[ENA]
¡û
>W1910176092
BJCW01000051
Gammaproteobacteria
Escherichia albertii U350-1 [BJCW]
1748
1674
-
Gly
TCC
[ENA]
¡û
>W1910176176
BJCX01000118
Gammaproteobacteria
Escherichia albertii AZK-6-2 [BJCX]
1886
1812
-
Gly
TCC
[ENA]
¡û
>W1910176627
BJDD01000057
Gammaproteobacteria
Escherichia albertii Mkr3965 [BJDD]
4708
4782
+
Gly
TCC
[ENA]
¡û
>W1910176708
BJDE01000028
Gammaproteobacteria
Escherichia albertii Esc18014 [BJDE]
1886
1812
-
Gly
TCC
[ENA]
¡û
>W1810308963
PTSQ01000005
Gammaproteobacteria
Escherichia albertii MOD1-EC5952 [PTSQ]
267208
267282
+
Gly
TCC
[ENA]
¡û
>W1610054847
BBVE01000009
Gammaproteobacteria
Escherichia albertii [BBVE]
1811
1737
-
Gly
TCC
[ENA]
¡û
>W1610055125
BBVI01000034
Gammaproteobacteria
Escherichia albertii [BBVI]
1649
1575
-
Gly
TCC
[ENA]
¡û
>W1610055181
BBVJ01000075
Gammaproteobacteria
Escherichia albertii [BBVJ]
3605
3679
+
Gly
TCC
[ENA]
¡û
>W1610055379
BBVN01000010
Gammaproteobacteria
Escherichia albertii [BBVN]
176341
176415
+
Gly
TCC
[ENA]
¡û
>W1610055536
BBVP01000042
Gammaproteobacteria
Escherichia albertii [BBVP]
1654
1580
-
Gly
TCC
[ENA]
¡û
>W1610055730
BBVS01000054
Gammaproteobacteria
Escherichia albertii [BBVS]
1583
1509
-
Gly
TCC
[ENA]
¡û
>W1610055791
BBVT01000057
Gammaproteobacteria
Escherichia albertii [BBVT]
2104
2030
-
Gly
TCC
[ENA]
¡û
>W1610056175
BBWA01000002
Gammaproteobacteria
Escherichia albertii [BBWA]
570360
570434
+
Gly
TCC
[ENA]
¡û
>W1710051546
BBVE01000009
Gammaproteobacteria
Escherichia albertii [BBVE]
1811
1737
-
Gly
TCC
[ENA]
¡û
>W1710051824
BBVI01000034
Gammaproteobacteria
Escherichia albertii [BBVI]
1649
1575
-
Gly
TCC
[ENA]
¡û
>W1710051880
BBVJ01000075
Gammaproteobacteria
Escherichia albertii [BBVJ]
3605
3679
+
Gly
TCC
[ENA]
¡û
>W1710052078
BBVN01000010
Gammaproteobacteria
Escherichia albertii [BBVN]
176341
176415
+
Gly
TCC
[ENA]
¡û
>W1710052235
BBVP01000042
Gammaproteobacteria
Escherichia albertii [BBVP]
1654
1580
-
Gly
TCC
[ENA]
¡û
>W1710052429
BBVS01000054
Gammaproteobacteria
Escherichia albertii [BBVS]
1583
1509
-
Gly
TCC
[ENA]
¡û
>W1710052490
BBVT01000057
Gammaproteobacteria
Escherichia albertii [BBVT]
2104
2030
-
Gly
TCC
[ENA]
¡û
>W1710052874
BBWA01000002
Gammaproteobacteria
Escherichia albertii [BBWA]
570360
570434
+
Gly
TCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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