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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655629 (89 seq.)
>W1710892572
LNDW01000018
Betaproteobacteria
Betaproteobacteria bacterium Ga0077527 [LNDW]
121141
121067
-
Val
CAC
[ENA]
¡û
>W1711135973
LUZR01000011
Betaproteobacteria
Burkholderiales bacterium Beta_02 [LUZR]
7031
6957
-
Val
CAC
[ENA]
¡û
>W1711385757
MEEO01000056
Betaproteobacteria
Nitrosomonadales bacterium SCN 54-20 [MEEO]
39455
39381
-
Val
CAC
[ENA]
¡û
>W1711387426
MEGQ01000006
Betaproteobacteria
Thiomonas sp. SCN 64-16 [MEGQ]
34907
34833
-
Val
CAC
[ENA]
¡û
>W1711505609
MKVR01000052
Betaproteobacteria
Nitrosospira sp. 56-18 [MKVR]
139853
139927
+
Val
CAC
[ENA]
¡û
>W1711744339
MUHU01000008
Betaproteobacteria
Derxia lacustris [MUHU]
170772
170846
+
Val
CAC
[ENA]
¡û
>C171103248
CP020046
Betaproteobacteria
Thiomonas intermedia ATCC 15466 [CP020046]
3127717
3127643
-
Val
CAC
-
¡û
>W131249852
CAUA01000084
Betaproteobacteria
Nitrosospira lacus APG3 [CAUA]
25711
25637
-
Val
CAC
[ENA]
¡û
>C015154
CP000103
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 [CP000103]
1840080
1840154
+
Val
CAC
[Ensembl]
¡û
>WENV180018294
FSYV01000349
[FSYV] metagenome; soil
6622
6548
-
Val
CAC
[ENA]
¢þ
>WENV180099482
NMRC01007877
[NMRC] plant metagenome; fluid collected inside the plant's pitcher
835
909
+
Val
CAC
[ENA]
¢þ
>WENV180692285
OCZS010446790
[OCZS] soil metagenome; soil
199
273
+
Val
CAC
[ENA]
¢þ
>WENV181188269
OEOE01064486
[OEOE] activated sludge metagenome; Activated Sludge
207
281
+
Val
CAC
[ENA]
¢þ
>WENV181189557
OEOF01086201
[OEOF] activated sludge metagenome; Activated Sludge
201
127
-
Val
CAC
[ENA]
¢þ
>WENV181230850
OFEK01004234
[OFEK] activated sludge metagenome; Anaerobic digester
3125
3199
+
Val
CAC
[ENA]
¢þ
>WENV181295777
OFHJ01000556
[OFHJ] soil metagenome; Clay
10370
10296
-
Val
CAC
[ENA]
¢þ
>WENV181295859
OFHJ01001356
[OFHJ] soil metagenome; Clay
5894
5820
-
Val
CAC
[ENA]
¢þ
>WENV181380762
OFRE01005512
[OFRE] wastewater metagenome; Exp Tend NO 50WW
449
375
-
Val
CAC
[ENA]
¢þ
>W141169876
AXWS01000008
Betaproteobacteria
Derxia gummosa DSM 723 [AXWS]
371073
371147
+
Val
CAC
[ENA]
¡û
>WENV183666880
ORJL010593269
[ORJL] groundwater metagenome; groundwater
5071
5145
+
Val
CAC
[ENA]
¢þ
>WENV183676515
ORJL011634165
[ORJL] groundwater metagenome; groundwater
7
81
+
Val
CAC
[ENA]
¢þ
>WENV183682086
ORMF010396039
[ORMF] groundwater metagenome; groundwater
69087
69161
+
Val
CAC
[ENA]
¢þ
>WENV183683706
ORMF010610414
[ORMF] groundwater metagenome; groundwater
333
407
+
Val
CAC
[ENA]
¢þ
>WENV170009834
APMI01003669
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
14157
14231
+
Val
CAC
[ENA]
¢þ
>WENV170553894
CXWK01036772
[CXWK] wastewater metagenome; activated sludge
1566
1492
-
Val
CAC
[ENA]
¢þ
>WENV170635017
JAHE01178775
[JAHE] sediment metagenome; lake sediment
112
186
+
Val
CAC
[ENA]
¢þ
>WENV170705418
LNAO01000260
[LNAO] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
6378
6304
-
Val
CAC
[ENA]
¢þ
>WENV170705869
LNAP01000536
[LNAP] soil metagenome; Soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
7428
7502
+
Val
CAC
[ENA]
¢þ
>WENV170708761
LNAQ01000701
[LNAQ] soil metagenome; soil samples (1 kg each in a 20% v/v slurry with milli Q water) were incubated in the dark with
4353
4279
-
Val
CAC
[ENA]
¢þ
>WENV170709095
LNFM01000104
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
192695
192621
-
Val
CAC
[ENA]
¢þ
>WENV170713697
LNFM01039168
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
16
90
+
Val
CAC
[ENA]
¢þ
>WENV170714010
LNFM01050672
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
2828
2754
-
Val
CAC
[ENA]
¢þ
>WENV170714327
LNFM01068000
[LNFM] activated carbon metagenome; dual media filters at the Ann Arbor, Michigan drinking water treatment plant
16
90
+
Val
CAC
[ENA]
¢þ
>WENV170961810
MLJW01001664
[MLJW] mine drainage metagenome; sample collected from the inflow into an acid mine drainage treatment plant; enriched for
2026
1952
-
Val
CAC
[ENA]
¢þ
>C181049314
CP021106
Betaproteobacteria
Nitrosospira lacus APG3 [CP021106]
2386513
2386587
+
Val
CAC
-
¡û
>W141558410
JHVX01000002
Betaproteobacteria
Nitrosospira briensis C-128 [JHVX]
304019
304093
+
Val
CAC
[ENA]
¡û
>W1910183543
BJNV01000008
Betaproteobacteria
Zoogloea ramigera NBRC 15342 [BJNV]
3864
3790
-
Val
CAC
[ENA]
¡û
>W1910228573
FNVK01000028
Betaproteobacteria
Nitrosospira multiformis ATCC 25196 Nl13 [FNVK]
611
537
-
Val
CAC
[ENA]
¡û
>W1910744080
MHZX01000091
Betaproteobacteria
Rhodocyclales bacterium RIFCSPLOWO2_02_FULL_63_24 [MHZX]
32800
32726
-
Val
CAC
[ENA]
¡û
>W1910828080
MWUM01000015
Betaproteobacteria
Zoogloea sp. LCSB751 [MWUM]
99820
99894
+
Val
CAC
[ENA]
¡û
>W1911496919
OCMZ01000002
Betaproteobacteria
Nitrosovibrio sp. Nv4 [OCMZ]
623126
623200
+
Val
CAC
[ENA]
¡û
>W1810463586
PZZR01000002
Betaproteobacteria
Nitrosospira sp. Nsp22 [PZZR]
399455
399529
+
Val
CAC
[ENA]
¡û
>W1810464063
QAAC01000001
Betaproteobacteria
Nitrosospira sp. Nsp6 [QAAC]
120165
120091
-
Val
CAC
[ENA]
¡û
>W1810476967
QAOK01000036
Betaproteobacteria
Nitrosospira multiformis Nl12 [QAOK]
2019
1945
-
Val
CAC
[ENA]
¡û
>W1810477250
QAOR01000001
Betaproteobacteria
Nitrosospira sp. Nsp5 [QAOR]
120165
120091
-
Val
CAC
[ENA]
¡û
>W1810477407
QAOU01000001
Betaproteobacteria
Nitrosospira sp. Nsp2 [QAOU]
843957
843883
-
Val
CAC
[ENA]
¡û
>W1810503424
QBKC01000006
Betaproteobacteria
Nitrosospira sp. Nsp37 [QBKC]
27240
27314
+
Val
CAC
[ENA]
¡û
>W1810696178
QLTB01000006
Betaproteobacteria
Nitrosospira multiformis Nl15 [QLTB]
86225
86299
+
Val
CAC
[ENA]
¡û
>W1810696234
QLTC01000015
Betaproteobacteria
Nitrosospira multiformis Nsp16 [QLTC]
43195
43121
-
Val
CAC
[ENA]
¡û
>W1810696270
QLTD01000003
Betaproteobacteria
Nitrosospira multiformis Nl8 [QLTD]
155171
155097
-
Val
CAC
[ENA]
¡û
>C151000915
AP012547
Betaproteobacteria
Sulfuritalea hydrogenivorans sk43H DSM 22779 [AP012547]
2445142
2445216
+
Val
CAC
[Ensembl]
¡û
>C151071221
CP010554
Betaproteobacteria
Rugosibacter aromaticivorans Ca6 [CP010554]
1506080
1506006
-
Val
CAC
[Ensembl]
¡û
>C151094461
CP012371
Betaproteobacteria
Nitrosospira briensis C-128 [CP012371]
3038270
3038196
-
Val
CAC
-
¡û
>W10105794
ACXV01000014
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
43384
43458
+
Val
CAC
[ENA]
¡û
>C10113358
CP002021
Betaproteobacteria
Thiomonas intermedia [CP002021]
1462624
1462550
-
Val
CAC
[Ensembl]
¡û
>W11108114
ACXV01000014
Betaproteobacteria
Thiomonas intermedia K12 [ACXV]
43384
43458
+
Val
CAC
[ENA]
¡û
>W1510741285
CYHF01000007
Betaproteobacteria
Thiomonas bhubaneswarensis DSM 18181 [CYHF]
28997
29071
+
Val
CAC
[ENA]
¡û
>C121016374
FP475956
Betaproteobacteria
Thiomonas arsenitoxydans 3As [FP475956]
1678557
1678483
-
Val
CAC
[Ensembl]
¡û
>W1610085394
CTRI01000023
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
119086
119160
+
Val
CAC
[ENA]
¡û
>W1610085451
CTRJ01000042
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
119329
119403
+
Val
CAC
[ENA]
¡û
>W1610085469
CTRK01000031
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
95669
95595
-
Val
CAC
[ENA]
¡û
>W1610085510
CTRL01000029
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
95668
95594
-
Val
CAC
[ENA]
¡û
>W1610085548
CTRM01000004
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
34431
34357
-
Val
CAC
[ENA]
¡û
>W1610632426
LIPV01000007
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
28997
29071
+
Val
CAC
[ENA]
¡û
>W1610752838
LNDW01000018
Betaproteobacteria
Betaproteobacteria bacterium Ga0077527 [LNDW]
121141
121067
-
Val
CAC
[ENA]
¡û
>W1610947093
LUZR01000011
Betaproteobacteria
Burkholderiales bacterium Beta_02 [LUZR]
7031
6957
-
Val
CAC
[ENA]
¡û
>WENV080214
AATO01013219
Wastewater EBPR microbial communities from Bioreactor (USA sludge)
189
115
-
Val
CAC
[ENA]
>W1710089983
CTRI01000023
Betaproteobacteria
Thiomonas arsenitoxydans B1 [CTRI]
119086
119160
+
Val
CAC
[ENA]
¡û
>W1710090040
CTRJ01000042
Betaproteobacteria
Thiomonas arsenitoxydans CB6 [CTRJ]
119329
119403
+
Val
CAC
[ENA]
¡û
>W1710090058
CTRK01000031
Betaproteobacteria
Thiomonas arsenitoxydans ACO3 [CTRK]
95669
95595
-
Val
CAC
[ENA]
¡û
>W1710090099
CTRL01000029
Betaproteobacteria
Thiomonas arsenitoxydans ACO7 [CTRL]
95668
95594
-
Val
CAC
[ENA]
¡û
>W1710090137
CTRM01000004
Betaproteobacteria
Thiomonas sp. CB3 [CTRM]
34431
34357
-
Val
CAC
[ENA]
¡û
>W1710505949
FMUF01000003
Betaproteobacteria
Nitrosospira sp. Nsp1 [FMUF]
51342
51416
+
Val
CAC
[ENA]
¡û
>W1710507269
FMVD01000001
Betaproteobacteria
Nitrosospira sp. Nsp13 [FMVD]
692934
693008
+
Val
CAC
[ENA]
¡û
>W1710507925
FMVQ01000001
Betaproteobacteria
Nitrosospira sp. Nl5 [FMVQ]
415211
415137
-
Val
CAC
[ENA]
¡û
>W1710509153
FMWY01000013
Betaproteobacteria
Nitrosospira sp. Nsp18 [FMWY]
74939
74865
-
Val
CAC
[ENA]
¡û
>W1710527343
FNKY01000001
Betaproteobacteria
Nitrosospira multiformis [FNKY]
2515000
2515074
+
Val
CAC
[ENA]
¡û
>W1710527993
FNLO01000014
Betaproteobacteria
Chitinasiproducens palmae JS23 [FNLO]
103461
103535
+
Val
CAC
[ENA]
¡û
>W1710532582
FNQL01000002
Betaproteobacteria
Nitrosospira multiformis [FNQL]
346084
346158
+
Val
CAC
[ENA]
¡û
>W1710547227
FOCT01000006
Betaproteobacteria
Nitrosospira multiformis [FOCT]
193210
193284
+
Val
CAC
[ENA]
¡û
>W1710548567
FODX01000001
Betaproteobacteria
Nitrosovibrio sp. Nv6 [FODX]
620687
620761
+
Val
CAC
[ENA]
¡û
>W1710553121
FOHI01000004
Betaproteobacteria
Nitrosospira multiformis [FOHI]
662
588
-
Val
CAC
[ENA]
¡û
>W1710563652
FOPV01000021
Betaproteobacteria
Nitrosospira sp. Nsp14 [FOPV]
45210
45136
-
Val
CAC
[ENA]
¡û
>W1710570767
FOVJ01000001
Betaproteobacteria
Nitrosospira briensis [FOVJ]
1020152
1020226
+
Val
CAC
[ENA]
¡û
>W1710571476
FOVY01000008
Betaproteobacteria
Nitrosospira briensis [FOVY]
3210
3284
+
Val
CAC
[ENA]
¡û
>W1710578970
FPBZ01000006
Betaproteobacteria
Nitrosospira multiformis [FPBZ]
80976
80902
-
Val
CAC
[ENA]
¡û
>W1710579562
FPIQ01000002
Betaproteobacteria
Nitrosovibrio sp. Nv17 [FPIQ]
63715
63641
-
Val
CAC
[ENA]
¡û
>W1710591601
FRBV01000004
Betaproteobacteria
Nitrosospira sp. Nsp11 [FRBV]
111861
111787
-
Val
CAC
[ENA]
¡û
>W1710766812
LIPV01000007
Betaproteobacteria
Thiomonas bhubaneswarensis [LIPV]
28997
29071
+
Val
CAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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