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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655822 (99 seq.)
>W1710932027
LOHU01000080
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
425253
425179
-
Val
GAC
[ENA]
¡û
>W1711744310
MUHR01000017
Alphaproteobacteria
Planktotalea arctica IMCC9565 [MUHR]
27503
27577
+
Val
GAC
[ENA]
¡û
>C171092033
CP019307
Alphaproteobacteria
Phaeobacter inhibens DOK1-1 [CP019307]
2043136
2043210
+
Val
GAC
-
¡û
>C171108656
CP020474
Alphaproteobacteria
Roseovarius mucosus SMR3 [CP020474]
749606
749680
+
Val
GAC
-
¡û
>w027759
ABCL01000008
Alphaproteobacteria
Roseovarius sp. TM1035 [ABCL]
156270
156346
+
Val
GAC
[ENA]
¡û
>w012871
AAMV01000006
Alphaproteobacteria
Roseovarius sp. 217 [AAMV]
123310
123234
-
Val
GAC
[ENA]
¡û
>WENV180103476
OAPA01045761
[OAPA] marine metagenome; ENVO:00002010
411
337
-
Val
GAC
[ENA]
¢þ
>WENV180209483
OBAL01001532
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
1738
1812
+
Val
GAC
[ENA]
¢þ
>WENV180357304
OBNN01001206
[OBNN] marine metagenome; Coastal water
319
245
-
Val
GAC
[ENA]
¢þ
>WENV180391644
OBPN01014968
[OBPN] marine metagenome; seawater
206
132
-
Val
GAC
[ENA]
¢þ
>WENV180394583
OBPS01021055
[OBPS] marine metagenome; ENVO:00002010 seawater
458
532
+
Val
GAC
[ENA]
¢þ
>WENV180636657
OCRF01030382
[OCRF] marine metagenome; niskin bottle
322
396
+
Val
GAC
[ENA]
¢þ
>W141151453
AXBB01000002
Alphaproteobacteria
Phaeobacter inhibens DSM 16374 [AXBB]
428624
428550
-
Val
GAC
[ENA]
¡û
>W08005825
ABIE01000019
Alphaproteobacteria
Phaeobacter inhibens 2.1 [ABIE]
34504
34433
-
Val
GAC
[ENA]
¡û
>W08005871
ABIF01000009
Alphaproteobacteria
Phaeobacter inhibens BS107 [ABIF]
141483
141557
+
Val
GAC
[ENA]
¡û
>WENV182549145
OJBX01026288
[OJBX] seawater metagenome; Sea water
666
740
+
Val
GAC
[ENA]
¢þ
>WENV182591844
OJIO01007480
[OJIO] seawater metagenome; Sea water
722
796
+
Val
GAC
[ENA]
¢þ
>WENV170112077
CEGC01017092
[CEGC] microbial mat metagenome; grass silage
1
75
+
Val
GAC
[ENA]
¢þ
>WENV170260352
CEQZ01016143
[CEQZ] marine metagenome genome assembly TARA_070_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
959
885
-
Val
GAC
[ENA]
¢þ
>WENV170266983
CERE01167177
[CERE] marine metagenome genome assembly TARA_070_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
96
22
-
Val
GAC
[ENA]
¢þ
>WENV170269114
CERH01049519
[CERH] marine metagenome genome assembly TARA_072_MES_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
706
780
+
Val
GAC
[ENA]
¢þ
>WENV170468065
CEVF01008037
[CEVF] marine metagenome genome assembly TARA_124_SRF_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
1056
1130
+
Val
GAC
[ENA]
¢þ
>WENV170634484
FYBJ01001451
[FYBJ] marine metagenome; marine
14846
14772
-
Val
GAC
[ENA]
¢þ
>WENV170668378
LADL02003416
[LADL] rock porewater metagenome; Opalinus Clay rock porewater BRC-3 borehole
996
1070
+
Val
GAC
[ENA]
¢þ
>WENV170742268
LULU01007705
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
1639
1565
-
Val
GAC
[ENA]
¢þ
>WENV170759154
LUMS01004350
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
2163
2089
-
Val
GAC
[ENA]
¢þ
>W09112102
ABXM01000012
Alphaproteobacteria
Ruegeria sp. R11 [ABXM]
208292
208366
+
Val
GAC
[ENA]
¡û
>WENV170897966
MDTD01119145
[MDTD] marine metagenome; seawater
1156
1230
+
Val
GAC
[ENA]
¢þ
>WENV170927298
MDTG01114835
[MDTG] marine metagenome; seawater
2356
2282
-
Val
GAC
[ENA]
¢þ
>C181008440
CP010588
Alphaproteobacteria
Phaeobacter gallaeciensis P11 [CP010588]
3362849
3362923
+
Val
GAC
-
¡û
>C181008484
CP010595
Alphaproteobacteria
Phaeobacter inhibens P10 [CP010595]
3417325
3417399
+
Val
GAC
-
¡û
>C181008554
CP010599
Alphaproteobacteria
Phaeobacter inhibens P83 [CP010599]
3404350
3404424
+
Val
GAC
-
¡û
>C181008597
CP010610
Alphaproteobacteria
Phaeobacter inhibens P92 [CP010610]
3339598
3339672
+
Val
GAC
-
¡û
>C181008654
CP010617
Alphaproteobacteria
Phaeobacter inhibens P30 [CP010617]
3287178
3287252
+
Val
GAC
-
¡û
>C181008711
CP010623
Alphaproteobacteria
Phaeobacter inhibens P51 [CP010623]
3238607
3238681
+
Val
GAC
-
¡û
>C181008784
CP010629
Alphaproteobacteria
Phaeobacter inhibens P78 [CP010629]
3174968
3175042
+
Val
GAC
-
¡û
>C181008830
CP010636
Alphaproteobacteria
Phaeobacter gallaeciensis P73 [CP010636]
3361682
3361756
+
Val
GAC
-
¡û
>C181008884
CP010643
Alphaproteobacteria
Phaeobacter piscinae P36 [CP010643]
3193231
3193305
+
Val
GAC
-
¡û
>C181008941
CP010650
Alphaproteobacteria
Phaeobacter inhibens P54 [CP010650]
3294325
3294399
+
Val
GAC
-
¡û
>C181009013
CP010656
Alphaproteobacteria
Phaeobacter piscinae P71 [CP010656]
3168918
3168992
+
Val
GAC
-
¡û
>C181009055
CP010661
Alphaproteobacteria
Phaeobacter inhibens P74 [CP010661]
3341274
3341348
+
Val
GAC
-
¡û
>C181009112
CP010668
Alphaproteobacteria
Phaeobacter inhibens P57 [CP010668]
3237133
3237207
+
Val
GAC
-
¡û
>C181009185
CP010673
Alphaproteobacteria
Phaeobacter gallaeciensis P75 [CP010673]
3397101
3397175
+
Val
GAC
-
¡û
>C181009227
CP010681
Alphaproteobacteria
Phaeobacter piscinae P14 [CP010681]
3187326
3187400
+
Val
GAC
-
¡û
>C181009284
CP010689
Alphaproteobacteria
Phaeobacter piscinae P42 [CP010689]
3193231
3193305
+
Val
GAC
-
¡û
>C181009341
CP010696
Alphaproteobacteria
Phaeobacter inhibens P24 [CP010696]
3290458
3290532
+
Val
GAC
-
¡û
>C181009414
CP010705
Alphaproteobacteria
Phaeobacter inhibens P66 [CP010705]
3449140
3449214
+
Val
GAC
-
¡û
>C181009457
CP010715
Alphaproteobacteria
Phaeobacter piscinae P18 [CP010715]
3152564
3152638
+
Val
GAC
-
¡û
>C181009514
CP010725
Alphaproteobacteria
Phaeobacter inhibens P88 [CP010725]
3434315
3434389
+
Val
GAC
-
¡û
>C181009570
CP010735
Alphaproteobacteria
Phaeobacter inhibens P72 [CP010735]
3401820
3401894
+
Val
GAC
-
¡û
>C181009627
CP010741
Alphaproteobacteria
Phaeobacter inhibens P59 [CP010741]
3303403
3303477
+
Val
GAC
-
¡û
>C181009684
CP010745
Alphaproteobacteria
Phaeobacter inhibens P48 [CP010745]
3316068
3316142
+
Val
GAC
-
¡û
>C181009741
CP010749
Alphaproteobacteria
Phaeobacter inhibens P70 [CP010749]
3339597
3339671
+
Val
GAC
-
¡û
>C181009813
CP010756
Alphaproteobacteria
Phaeobacter inhibens P80 [CP010756]
3404354
3404428
+
Val
GAC
-
¡û
>C181009856
CP010767
Alphaproteobacteria
Phaeobacter piscinae P13 [CP010767]
3177871
3177945
+
Val
GAC
-
¡û
>C181009929
CP010784
Alphaproteobacteria
Phaeobacter gallaeciensis P63 [CP010784]
3361683
3361757
+
Val
GAC
-
¡û
>C181009971
CP010805
Alphaproteobacteria
Phaeobacter piscinae P23 [CP010805]
3193231
3193305
+
Val
GAC
-
¡û
>C181048988
CP021040
Alphaproteobacteria
Phaeobacter gallaeciensis P129 [CP021040]
3292315
3292389
+
Val
GAC
-
¡û
>C181049045
CP021047
Alphaproteobacteria
Phaeobacter gallaeciensis P128 [CP021047]
3292315
3292389
+
Val
GAC
-
¡û
>C181187986
CP030099
Alphaproteobacteria
Roseovarius sp. AK1035 [CP030099]
3675570
3675644
+
Val
GAC
-
¡û
>C191083142
CP031948
Alphaproteobacteria
Phaeobacter inhibens BS107 [CP031948]
3368082
3368156
+
Val
GAC
-
¡û
>C191083197
CP031952
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP031952]
3346114
3346188
+
Val
GAC
-
¡û
>C191083245
CP031956
Alphaproteobacteria
Phaeobacter sp. LSS9 [CP031956]
2290626
2290700
+
Val
GAC
-
¡û
>W141818749
JQLS01000008
Alphaproteobacteria
Roseovarius sp. MCTG156(2b) [JQLS]
1073129
1073055
-
Val
GAC
[ENA]
¡û
>W1910442639
FWFJ01000046
Alphaproteobacteria
Roseovarius gaetbuli CECT 8370 [FWFJ]
22042
21968
-
Val
GAC
[ENA]
¡û
>W1910442706
FWFL01000002
Alphaproteobacteria
Roseovarius litorisediminis CECT 8287 [FWFL]
518507
518433
-
Val
GAC
[ENA]
¡û
>W1910442860
FWFO01000003
Alphaproteobacteria
Falsiruegeria litorea R37 CECT 7639 [FWFO]
14896
14970
+
Val
GAC
[ENA]
¡û
>C141011192
CP006966
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [CP006966]
3362716
3362790
+
Val
GAC
[Ensembl]
¡û
>W1911539801
ONZG01000001
Alphaproteobacteria
Falsiruegeria mediterranea M15O_3 CECT 7615 [ONZG]
35621
35695
+
Val
GAC
[ENA]
¡û
>W1810112308
PHJF01000005
Alphaproteobacteria
Epibacterium ulvae U95 [PHJF]
246249
246175
-
Val
GAC
[ENA]
¡û
>W1810364790
PVTN01000003
Alphaproteobacteria
Marivita geojedonensis DSM 29432 [PVTN]
107210
107136
-
Val
GAC
[ENA]
¡û
>W1810532461
QCYH01000003
Alphaproteobacteria
Pelagivirga sediminicola BH-SD19 [QCYH]
33801
33875
+
Val
GAC
[ENA]
¡û
>W1810570018
QEHM01000003
Alphaproteobacteria
Albibacillus kandeliae J95 [QEHM]
13696
13622
-
Val
GAC
[ENA]
¡û
>W1510650457
CVQZ01000029
Alphaproteobacteria
Phaeobacter italicus CECT 7645 [CVQZ]
151427
151353
-
Val
GAC
[ENA]
¡û
>W1510650748
CVRL01000041
Alphaproteobacteria
Phaeobacter italicus CECT 7321 [CVRL]
227652
227578
-
Val
GAC
[ENA]
¡û
>W1510650806
CVRM01000034
Alphaproteobacteria
Phaeobacter italicus CECT 7645 [CVRM]
151427
151353
-
Val
GAC
[ENA]
¡û
>W1511388755
JSWJ01000004
Alphaproteobacteria
Phaeobacter sp. S60 [JSWJ]
1338
1412
+
Val
GAC
[ENA]
¡û
>W1511388804
JSWK01000003
Alphaproteobacteria
Phaeobacter piscinae S26 [JSWK]
190791
190717
-
Val
GAC
[ENA]
¡û
>W1511564677
LADY01000011
Alphaproteobacteria
Roseovarius sp. BRH_c41 [LADY]
11713
11787
+
Val
GAC
[ENA]
¡û
>W1511583813
LAUK01000008
Alphaproteobacteria
Nautella sp. ECSMB14104 [LAUK]
11594
11668
+
Val
GAC
[ENA]
¡û
>C121003786
CP002972
Alphaproteobacteria
Phaeobacter inhibens 2.10 [CP002972]
3346055
3346129
+
Val
GAC
[Ensembl]
¡û
>C121003845
CP002976
Alphaproteobacteria
Phaeobacter inhibens DSM 17395 [CP002976]
3407046
3407120
+
Val
GAC
-
¡û
>W1610014797
AONH01000016
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
570493
570419
-
Val
GAC
[ENA]
¡û
>W1610016174
AOQA01000011
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
426342
426268
-
Val
GAC
[ENA]
¡û
>W1610789496
LOHU01000080
Alphaproteobacteria
Phaeobacter inhibens [LOHU]
425253
425179
-
Val
GAC
[ENA]
¡û
>W1710011688
AONH01000016
Alphaproteobacteria
Roseovarius mucosus DSM 17069 [AONH]
570493
570419
-
Val
GAC
[ENA]
¡û
>W1710013065
AOQA01000011
Alphaproteobacteria
Phaeobacter gallaeciensis DSM 26640 [AOQA]
426342
426268
-
Val
GAC
[ENA]
¡û
>W1710015339
AQQP01000001
Alphaproteobacteria
Phaeobacter sp. 22II1-1F12B [AQQP]
488245
488171
-
Val
GAC
[ENA]
¡û
>W1710508624
FMWG01000006
Alphaproteobacteria
Epibacterium ulvae [FMWG]
247298
247224
-
Val
GAC
[ENA]
¡û
>W1710531631
FNPR01000003
Alphaproteobacteria
Lentibacter algarum [FNPR]
185654
185728
+
Val
GAC
[ENA]
¡û
>W1710543587
FOAC01000001
Alphaproteobacteria
Roseovarius nanhaiticus [FOAC]
2096272
2096198
-
Val
GAC
[ENA]
¡û
>W1710543739
FOAG01000006
Alphaproteobacteria
Roseovarius azorensis [FOAG]
87188
87114
-
Val
GAC
[ENA]
¡û
>W1710562491
FOOZ01000007
Alphaproteobacteria
Phaeobacter italicus italica [FOOZ]
151728
151654
-
Val
GAC
[ENA]
¡û
>W1710571070
FOVP01000016
Alphaproteobacteria
Roseovarius lutimaris [FOVP]
50713
50787
+
Val
GAC
[ENA]
¡û
>W1710591162
FRBN01000015
Alphaproteobacteria
Roseovarius marisflavi [FRBN]
32478
32552
+
Val
GAC
[ENA]
¡û
>W1710591914
FRCB01000010
Alphaproteobacteria
Roseovarius litoreus [FRCB]
93961
93887
-
Val
GAC
[ENA]
¡û
>W1710598191
FTNV01000001
Alphaproteobacteria
Roseovarius nanhaiticus [FTNV]
14806
14880
+
Val
GAC
[ENA]
¡û
>W1710616678
JFKC01000002
Alphaproteobacteria
Marivita geojedonensis [JFKC]
188220
188146
-
Val
GAC
[ENA]
¡û
>W1710616723
JFKD01000003
Alphaproteobacteria
Marivita cryptomonadis [JFKD]
258316
258390
+
Val
GAC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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