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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.655983 (49 seq.)
>W1711088977
LSZG01000040
Gammaproteobacteria
Acinetobacter terrae SFC [LSZG]
197858
197932
+
Thr
GGT
[ENA]
¡û
>W1711089044
LSZH01000015
Gammaproteobacteria
Acinetobacter sp. SFB [LSZH]
221704
221778
+
Thr
GGT
[ENA]
¡û
>W1711178323
LWGP01000011
Gammaproteobacteria
Acinetobacter radioresistens [LWGP]
350
276
-
Thr
GGT
[ENA]
¡û
>W1711511581
MLCN01000032
Gammaproteobacteria
Alkanindiges hydrocarboniclasticus H1 [MLCN]
310
236
-
Thr
GGT
[ENA]
¡û
>W1712003238
NEGC01000001
Gammaproteobacteria
Acinetobacter sp. ANC 4470 [NEGC]
452193
452119
-
Thr
GGT
[ENA]
¡û
>W1712003478
NEGF01000006
Gammaproteobacteria
Acinetobacter terrae ANC 4655 [NEGF]
195931
196005
+
Thr
GGT
[ENA]
¡û
>W1712003904
NEGL01000004
Gammaproteobacteria
Acinetobacter sp. ANC 4654 [NEGL]
500
426
-
Thr
GGT
[ENA]
¡û
>W1712003975
NEGM01000004
Gammaproteobacteria
Acinetobacter sp. ANC 4973 [NEGM]
225006
224932
-
Thr
GGT
[ENA]
¡û
>W131042448
AMJJ01000003
Gammaproteobacteria
Acinetobacter radioresistens TG02010 [AMJJ]
83630
83704
+
Thr
GGT
[ENA]
¡û
>W131112837
APOH01000009
Gammaproteobacteria
Acinetobacter bohemicus ANC 3994 [APOH]
144228
144154
-
Thr
GGT
[ENA]
¡û
>W131116187
APQE01000005
Gammaproteobacteria
Acinetobacter radioresistens NIPH 2130 [APQE]
123738
123664
-
Thr
GGT
[ENA]
¡û
>W131116226
APQF01000007
Gammaproteobacteria
Acinetobacter radioresistens DSM 6976 = NBRC 102413 = CIP 103788 [APQF]
83408
83482
+
Thr
GGT
[ENA]
¡û
>WENV181379298
OFRD01000351
[OFRD] wastewater metagenome; Exp Tend CN 100WW
3867
3941
+
Thr
GGT
[ENA]
¢þ
>WENV181414439
OGCL01000387
[OGCL] hot springs metagenome; Hot spring water
310
236
-
Thr
GGT
[ENA]
¢þ
>WENV181836585
OGVJ01012969
[OGVJ] freshwater metagenome; freshwater
356
282
-
Thr
GGT
[ENA]
¢þ
>WENV170022822
BCQK01054993
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
379
453
+
Thr
GGT
[ENA]
¢þ
>W141441910
JEWP01000033
Gammaproteobacteria
Acinetobacter sp. 1461402 1461402 [JEWP]
1427
1353
-
Thr
GGT
[ENA]
¡û
>W141442642
JEWW01000011
Gammaproteobacteria
Acinetobacter sp. 230853 230853 [JEWW]
84689
84763
+
Thr
GGT
[ENA]
¡û
>W141442724
JEWX01000014
Gammaproteobacteria
Acinetobacter sp. 272263 272263 [JEWX]
628
554
-
Thr
GGT
[ENA]
¡û
>W141443709
JEXH01000005
Gammaproteobacteria
Acinetobacter sp. 869535 869535 [JEXH]
83016
83090
+
Thr
GGT
[ENA]
¡û
>W141444519
JEXO01000040
Gammaproteobacteria
Acinetobacter sp. 983759 983759 [JEXO]
682
608
-
Thr
GGT
[ENA]
¡û
>W141445545
JEXZ01000012
Gammaproteobacteria
Acinetobacter sp. 1239920 1239920 [JEXZ]
79294
79368
+
Thr
GGT
[ENA]
¡û
>W141452601
JFCC01000015
Gammaproteobacteria
Acinetobacter sp. 1294596 1294596 [JFCC]
1360
1286
-
Thr
GGT
[ENA]
¡û
>C181150881
CP027365
Gammaproteobacteria
Acinetobacter radioresistens DSSKY-A-001 [CP027365]
216302
216376
+
Thr
GGT
-
¡û
>C181187168
CP030031
Gammaproteobacteria
Acinetobacter radioresistens LH6 [CP030031]
210959
211033
+
Thr
GGT
-
¡û
>C181197129
CP031222
Gammaproteobacteria
Aquirhabdus parva HYN0046 [CP031222]
2503745
2503671
-
Thr
GGT
-
¡û
>W09135546
ACVR01000073
Gammaproteobacteria
Acinetobacter radioresistens SK82 [ACVR]
223
149
-
Thr
GGT
[ENA]
¡û
>C191157218
CP038022
Gammaproteobacteria
Acinetobacter radioresistens DD78 [CP038022]
216242
216316
+
Thr
GGT
-
¡û
>W141557167
JHUX01000007
Gammaproteobacteria
Alkanindiges illinoisensis DSM 15370 [JHUX]
185068
185142
+
Thr
GGT
[ENA]
¡û
>W141564839
JIBB01000007
Gammaproteobacteria
Acinetobacter sp. UNC436CL71CviS28 [JIBB]
83487
83561
+
Thr
GGT
[ENA]
¡û
>W141705492
JMNM01000037
Gammaproteobacteria
Acinetobacter sp. 263903-1 263903-1 [JMNM]
682
608
-
Thr
GGT
[ENA]
¡û
>W1911812229
QZDR01000002
Gammaproteobacteria
Acinetobacter radioresistens B62 [QZDR]
83535
83609
+
Thr
GGT
[ENA]
¡û
>W1810149277
PISK01000028
Gammaproteobacteria
Acinetobacter radioresistens 50v1 [PISK]
103681
103607
-
Thr
GGT
[ENA]
¡û
>W1810378532
PXJD01000016
Gammaproteobacteria
Acinetobacter radioresistens A154 [PXJD]
83445
83519
+
Thr
GGT
[ENA]
¡û
>W1810378573
PXJE01000036
Gammaproteobacteria
Acinetobacter radioresistens A145 [PXJE]
28635
28709
+
Thr
GGT
[ENA]
¡û
>C151096097
CP012608
Gammaproteobacteria
Acinetobacter sp. TTH0-4 [CP012608]
1974054
1974128
+
Thr
GGT
-
¡û
>W10102540
ACPO01000033
Gammaproteobacteria
Acinetobacter radioresistens SH164 [ACPO]
83278
83352
+
Thr
GGT
[ENA]
¡û
>W11102696
ACPO01000033
Gammaproteobacteria
Acinetobacter radioresistens SH164 [ACPO]
83278
83352
+
Thr
GGT
[ENA]
¡û
>W1511500967
JXBK01000001
Gammaproteobacteria
Acinetobacter harbinensis HITLi 7 [JXBK]
207330
207256
-
Thr
GGT
[ENA]
¡û
>W1511583239
LATS01000007
Gammaproteobacteria
Acinetobacter radioresistens CM38 [LATS]
83318
83392
+
Thr
GGT
[ENA]
¡û
>W121046849
AIDZ01000006
Gammaproteobacteria
Acinetobacter radioresistens DSM 6976 = NBRC 102413 [AIDZ]
83552
83626
+
Thr
GGT
[ENA]
¡û
>W121110832
ALIR01000005
Gammaproteobacteria
Acinetobacter radioresistens WC-A-157 [ALIR]
375638
375564
-
Thr
GGT
[ENA]
¡û
>W121126395
BAGY01000028
Gammaproteobacteria
Acinetobacter radioresistens DSM 6976 = NBRC 102413 [BAGY]
83280
83354
+
Thr
GGT
[ENA]
¡û
>W1610516109
FMBK01000008
Gammaproteobacteria
Acinetobacter albensis [FMBK]
187112
187186
+
Thr
GGT
[ENA]
¡û
>W1610923355
LSZG01000040
Gammaproteobacteria
Acinetobacter terrae SFC [LSZG]
197858
197932
+
Thr
GGT
[ENA]
¡û
>W1610923422
LSZH01000015
Gammaproteobacteria
Acinetobacter sp. SFB [LSZH]
221704
221778
+
Thr
GGT
[ENA]
¡û
>W1710501400
FMBK01000008
Gammaproteobacteria
Acinetobacter albensis [FMBK]
187112
187186
+
Thr
GGT
[ENA]
¡û
>W1710531283
FNPK01000048
Gammaproteobacteria
Acinetobacter kyonggiensis [FNPK]
326
252
-
Thr
GGT
[ENA]
¡û
>W1710576146
FOZU01000016
Gammaproteobacteria
Acinetobacter bohemicus [FOZU]
79865
79939
+
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK