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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656202 (64 seq.)
>W1710870836
LMKV01000012
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
419710
419784
+
Gln
TTG
[ENA]
¡û
>W1710912895
LNRZ01000008
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
69413
69339
-
Gln
TTG
[ENA]
¡û
>W1711082188
LSTR01000033
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
5895
5969
+
Gln
TTG
[ENA]
¡û
>W1711083859
LSVG01000031
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
60488
60562
+
Gln
TTG
[ENA]
¡û
>W1711146758
LVJD01000090
Alphaproteobacteria
Sphingobium yanoikuyae [LVJD]
134
208
+
Gln
TTG
[ENA]
¡û
>W1711259781
LYVN01000047
Alphaproteobacteria
Sphingopyxis sp. KK2 [LYVN]
24462
24536
+
Gln
TTG
[ENA]
¡û
>W1712076953
NGUN01000003
Alphaproteobacteria
Sphingobium sp. GW456-12-10-14-TSB1 [NGUN]
406345
406419
+
Gln
TTG
[ENA]
¡û
>W1712105769
NISJ01000003
Alphaproteobacteria
Sphingopyxis witflariensis [NISJ]
285915
285841
-
Gln
TTG
[ENA]
¡û
>PL171001453
CP020539
Alphaproteobacteria
Sphingobium herbicidovorans MH plasmid:pMSHV
497835
497761
-
Gln
TTG
[ENA]
¡û
>C171049888
CP016456
Alphaproteobacteria
Sphingobium sp. RAC03 [CP016456]
2402703
2402629
-
Gln
TTG
-
¡û
>C171094575
CP019449
Alphaproteobacteria
Sphingopyxis sp. QXT-31 [CP019449]
2475683
2475609
-
Gln
TTG
-
¡û
>W131002987
AGZU01000006
Alphaproteobacteria
Sphingobium yanoikuyae ATCC 51230 [AGZU]
170188
170114
-
Gln
TTG
[ENA]
¡û
>W131052367
AMYX01000009
Alphaproteobacteria
alpha proteobacterium LLX12A [AMYX]
70583
70509
-
Gln
TTG
[ENA]
¡û
>W131241105
BARE01000001
Alphaproteobacteria
Sphingobium xenophagum NBRC 107872 [BARE]
87805
87731
-
Gln
TTG
[ENA]
¡û
>W131251320
CAVK010000198
Alphaproteobacteria
Sphingobium indicum BiD32 [CAVK]
42598
42524
-
Gln
TTG
[ENA]
¡û
>WENV180040634
LLBZ010003295
[LLBZ] soil metagenome; soil from tomato rhizosphere
2901
2975
+
Gln
TTG
[ENA]
¢þ
>WENV180285228
OBID01282667
[OBID] metagenome; sludge
61
135
+
Gln
TTG
[ENA]
¢þ
>WENV181227759
OFDN01040436
[OFDN] hot springs metagenome; Water
537
463
-
Gln
TTG
[ENA]
¢þ
>WENV181367237
OFPW01005981
[OFPW] freshwater metagenome; Freshwater Lake
38
112
+
Gln
TTG
[ENA]
¢þ
>W141191325
AYOY01000043
Alphaproteobacteria
Sphingobium sp. C100 [AYOY]
7011
6937
-
Gln
TTG
[ENA]
¡û
>WENV183729714
PJTR01000028
[PJTR] soil metagenome; Soil (2) enriched on wood chips: beechwood xylan treatment
74741
74667
-
Gln
TTG
[ENA]
¢þ
>WENV183730446
PJTS01000022
[PJTS] soil metagenome; Soil (2) enriched on wood chips: alkali lignin treatment
165886
165960
+
Gln
TTG
[ENA]
¢þ
>WENV183732555
PJTX01002022
[PJTX] soil metagenome; Soil enriched (2) on filter paper: beechwood xylan treatment
1697
1771
+
Gln
TTG
[ENA]
¢þ
>WENV183733162
PJTY01000157
[PJTY] soil metagenome; Soil enriched (2) on filter paper: alkali lignin treatment
26591
26665
+
Gln
TTG
[ENA]
¢þ
>WENV183734199
PJTZ01000186
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
18751
18677
-
Gln
TTG
[ENA]
¢þ
>WENV183734273
PJTZ01000782
[PJTZ] soil metagenome; Soil enriched (2) on filter paper
5407
5481
+
Gln
TTG
[ENA]
¢þ
>WENV183737083
PJUD01000367
[PJUD] feces metagenome; Chicken feces (3) enriched on wood chips: beechwood xylan treatment
5045
5119
+
Gln
TTG
[ENA]
¢þ
>WENV170136549
CENV01047563
[CENV] marine metagenome genome assembly TARA_031_SRF_0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
342
268
-
Gln
TTG
[ENA]
¢þ
>W141426712
JEMV01000001
Alphaproteobacteria
Sphingobium sp. Ant17 [JEMV]
165100
165174
+
Gln
TTG
[ENA]
¡û
>W141484984
JFZA02000007
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [JFZA]
83072
82998
-
Gln
TTG
[ENA]
¡û
>C181047598
CP020925
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [CP020925]
4406553
4406479
-
Gln
TTG
-
¡û
>C181072093
CP022745
Alphaproteobacteria
Sphingobium xenophagum C1 [CP022745, CP022746]
2177956
2178030
+
Gln
TTG
-
¡û
>C181089702
CP023741
Alphaproteobacteria
Sphingobium yanoikuyae S72 [CP023741]
3189172
3189098
-
Gln
TTG
-
¡û
>C191002759
AP018518
Alphaproteobacteria
Sphingobium sp. YG1 [AP018518, AP018519]
1779947
1779873
-
Gln
TTG
-
¡û
>W141520447
JGVR01000009
Alphaproteobacteria
Sphingobium yanoikuyae [JGVR]
189010
188936
-
Gln
TTG
[ENA]
¡û
>C191063615
CP029335
Alphaproteobacteria
Sphingobium sp. LF-16 [CP029335]
654228
654302
+
Gln
TTG
-
¡û
>C191103903
CP033230
Alphaproteobacteria
Sphingobium yanoikuyae SJTF8 [CP033230]
2267766
2267692
-
Gln
TTG
-
¡û
>C191163678
CP039248
Alphaproteobacteria
Sphingobium sp. PAMC28499 [CP039248]
2197896
2197970
+
Gln
TTG
-
¡û
>W141807767
JPOU01000052
Alphaproteobacteria
Sphingobium yanoikuyae [JPOU]
62629
62703
+
Gln
TTG
[ENA]
¡û
>W141808046
JPPQ01000069
Alphaproteobacteria
Sphingobium sp. ba1 [JPPQ]
2526941
2526867
-
Gln
TTG
[ENA]
¡û
>W1910006986
BBQY01000001
Alphaproteobacteria
Sphingobium xenophagum OW59 [BBQY]
1108851
1108925
+
Gln
TTG
[ENA]
¡û
>W1910744286
MIAK01000009
Alphaproteobacteria
Sphingomonadales bacterium RIFCSPLOWO2_12_FULL_63_15 [MIAK]
97896
97970
+
Gln
TTG
[ENA]
¡û
>W1910744377
MIAM01000014
Alphaproteobacteria
Sphingopyxis sp. RIFCSPHIGHO2_12_FULL_65_19 [MIAM]
198172
198098
-
Gln
TTG
[ENA]
¡û
>W1911075006
NMUA01000008
Alphaproteobacteria
Sphingobium sp. D43FB [NMUA]
13423
13349
-
Gln
TTG
[ENA]
¡û
>W1911688304
QLJK01000015
Alphaproteobacteria
Sphingomonas sp. S-NIH.Pt3_0716 [QLJK]
88039
88113
+
Gln
TTG
[ENA]
¡û
>W1911722429
QRAL01000008
Alphaproteobacteria
Sphingobium yanoikuyae SK-NIH.Env6_1116 [QRAL]
139822
139896
+
Gln
TTG
[ENA]
¡û
>W1911746108
QVRA01000024
Alphaproteobacteria
Sphingobium terrigena EO9 [QVRA]
34403
34329
-
Gln
TTG
[ENA]
¡û
>W1810400857
PYGL01000002
Alphaproteobacteria
Sphingobium sp. AEW4 [PYGL]
255833
255759
-
Gln
TTG
[ENA]
¡û
>W1510015807
BBRO01000002
Alphaproteobacteria
Sphingopyxis sp. C-1 [BBRO]
277878
277804
-
Gln
TTG
[ENA]
¡û
>W1510941330
JFFT01000008
Alphaproteobacteria
Sphingobium yanoikuyae SHJ [JFFT]
59655
59729
+
Gln
TTG
[ENA]
¡û
>W11176446
AFXE01000116
Alphaproteobacteria
Sphingobium yanoikuyae XLDN2-5 [AFXE]
20720
20794
+
Gln
TTG
[ENA]
¡û
>C161003436
CP005189
Alphaproteobacteria
Sphingobium sp. MI1205 [CP005188, CP005189]
369834
369908
+
Gln
TTG
-
¡û
>W1610076958
BCZD01000022
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
22440
22514
+
Gln
TTG
[ENA]
¡û
>W121068946
AJVL01000024
Alphaproteobacteria
Sphingobium sp. AP49 [AJVL]
40267
40193
-
Gln
TTG
[ENA]
¡û
>W121084337
AKIB01000049
Alphaproteobacteria
Sphingobium xenophagum QYY [AKIB]
422
348
-
Gln
TTG
[ENA]
¡û
>W1610733182
LMKV01000012
Alphaproteobacteria
Sphingobium sp. Leaf26 [LMKV]
419710
419784
+
Gln
TTG
[ENA]
¡û
>W1610771254
LNRZ01000008
Alphaproteobacteria
Sphingopyxis sp. H050 [LNRZ]
69413
69339
-
Gln
TTG
[ENA]
¡û
>W1610920973
LSTR01000033
Alphaproteobacteria
Sphingobium yanoikuyae [LSTR]
5895
5969
+
Gln
TTG
[ENA]
¡û
>W1610922612
LSVG01000031
Alphaproteobacteria
Sphingobium yanoikuyae [LSVG]
60488
60562
+
Gln
TTG
[ENA]
¡û
>W1710074647
BCZD01000022
Alphaproteobacteria
Sphingobium herbicidovorans NBRC 16415 [BCZD]
22440
22514
+
Gln
TTG
[ENA]
¡û
>W1710540061
FNWK01000003
Alphaproteobacteria
Sphingopyxis sp. YR583 [FNWK]
307352
307278
-
Gln
TTG
[ENA]
¡û
>W1710542203
FNYZ01000001
Alphaproteobacteria
Sphingobium sp. AP50 [FNYZ]
862542
862616
+
Gln
TTG
[ENA]
¡û
>W1710551567
FOGE01000003
Alphaproteobacteria
Sphingobium sp. YR768 [FOGE]
297986
297912
-
Gln
TTG
[ENA]
¡û
>W1710592154
FRCG01000003
Alphaproteobacteria
Sphingobium sp. YR657 [FRCG]
165394
165320
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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