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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656297 (64 seq.)
>W1710797311
LJSY01000025
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
566
492
-
Gln
TTG
[ENA]
¡û
>W1711127915
LURC01000145
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
211
285
+
Gln
TTG
[ENA]
¡û
>W1711572387
MNBL01000041
Alphaproteobacteria
Nioella sediminis JS7-11 [MNBL]
14075
14149
+
Gln
TTG
[ENA]
¡û
>C171072490
CP018076
Alphaproteobacteria
Sulfitobacter alexandrii AM1-D1 [CP018076]
2871641
2871715
+
Gln
TTG
-
¡û
>W131223001
AUBS01000005
Alphaproteobacteria
Pseudodonghicola xiamenensis DSM 18339 [AUBS]
237779
237853
+
Gln
TTG
[ENA]
¡û
>C022610
CP000377
Alphaproteobacteria
Ruegeria sp. TM1040 [CP000377]
572500
572574
+
Gln
TTG
[Ensembl]
¡û
>w027997
ABCR01000003
Alphaproteobacteria
Roseobacter sp. AzwK-3b [ABCR]
338994
339070
+
Gln
TTG
[ENA]
¡û
>w020864
AAVE01000004
Alphaproteobacteria
Dinoroseobacter shibae DFL 12 [AAVE]
175178
175102
-
Gln
TTG
[ENA]
¡û
>w014841
AAOT01000007
Alphaproteobacteria
Oceanicola granulosus HTCC2516 [AAOT]
89274
89198
-
Gln
TTG
[ENA]
¡û
>WENV180210167
OBAL01134313
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
171
97
-
Gln
TTG
[ENA]
¢þ
>WENV180366087
OBOC01126043
[OBOC] marine metagenome; ocean water
158
84
-
Gln
TTG
[ENA]
¢þ
>W141065738
AQQW01000003
Alphaproteobacteria
Roseivivax marinus 22II-s10s [AQQW]
377516
377590
+
Gln
TTG
[ENA]
¡û
>WENV181233995
OFET01000663
[OFET] microbial mat metagenome; enrichment culture HLUCC-A from microbial mat sample; contains cyanobacterium Phormidesmis
113
39
-
Gln
TTG
[ENA]
¢þ
>WENV181234514
OFEU01000244
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
660
586
-
Gln
TTG
[ENA]
¢þ
>C08004204
CP000830
Alphaproteobacteria
Dinoroseobacter shibae DFL 12 = DSM 16493 [CP000830]
573937
573866
-
Gln
TTG
[Ensembl]
¡û
>WENV019547
AACY020534359
Marine microbial communities from Global Ocean Sampling (GOS)
675
599
-
Gln
TTG
[ENA]
>W141284611
JALZ01000008
Alphaproteobacteria
Roseivivax halodurans JCM 10272 [JALZ]
46222
46148
-
Gln
TTG
[ENA]
¡û
>W141284821
JAME01000019
Alphaproteobacteria
Roseivivax isoporae LMG 25204 [JAME]
7074
7000
-
Gln
TTG
[ENA]
¡û
>WENV170229019
CEQG01064539
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
572
646
+
Gln
TTG
[ENA]
¢þ
>WENV170229129
CEQG01077336
[CEQG] marine metagenome genome assembly TARA_076_MES_0.45-0.8 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
655
581
-
Gln
TTG
[ENA]
¢þ
>WENV170742143
LULU01002123
[LULU] marine metagenome; Red Sea water column Station 108 - depth 50m
211
285
+
Gln
TTG
[ENA]
¢þ
>WENV170759094
LUMS01002248
[LUMS] marine metagenome; Red Sea water column Station 192 - depth 25m
277
351
+
Gln
TTG
[ENA]
¢þ
>WENV170762767
LUMW01036567
[LUMW] marine metagenome; Red Sea water column Station 192 - depth 500m
490
564
+
Gln
TTG
[ENA]
¢þ
>C191184429
CP040932
Alphaproteobacteria
Oceanicola sp. D3 [CP040932]
967898
967824
-
Gln
TTG
-
¡û
>W141562489
JHZF01000015
Alphaproteobacteria
Pseudooceanicola nanhaiensis DSM 18065 [JHZF]
202711
202637
-
Gln
TTG
[ENA]
¡û
>W09101522
AAFG02000003
Alphaproteobacteria
Ruegeria sp. TM1040 TM1040 [AAFG]
41164
41090
-
Gln
TTG
[ENA]
¡û
>W1910442658
FWFK01000001
Alphaproteobacteria
Roseivivax jejudonensis CECT 8625 [FWFK]
418441
418367
-
Gln
TTG
[ENA]
¡û
>W1910442928
FWFQ01000002
Alphaproteobacteria
Pseudoruegeria aquimaris CECT 7680 [FWFQ]
154611
154685
+
Gln
TTG
[ENA]
¡û
>W1910443350
FWFZ01000037
Alphaproteobacteria
Roseisalinus antarcticus CECT 7023 [FWFZ]
30543
30617
+
Gln
TTG
[ENA]
¡û
>W1910584235
JXTF01000040
Alphaproteobacteria
Roseovarius sp. JS7-11 [JXTF]
14075
14149
+
Gln
TTG
[ENA]
¡û
>W1911239550
NSDV01000010
Alphaproteobacteria
Paracoccaceae bacterium La 6 [NSDV]
1410154
1410228
+
Gln
TTG
[ENA]
¡û
>W1911653492
QDFI01000105
Alphaproteobacteria
Phycocomes zhengii LMIT002 [QDFI]
11627
11701
+
Gln
TTG
[ENA]
¡û
>W1810504528
QBKZ01000016
Alphaproteobacteria
Mangrovicoccus ximenensis T1lg56 [QBKZ]
470512
470586
+
Gln
TTG
[ENA]
¡û
>W1810570035
QEHM01000018
Alphaproteobacteria
Albibacillus kandeliae J95 [QEHM]
177
103
-
Gln
TTG
[ENA]
¡û
>W1810596893
QGGW01000008
Alphaproteobacteria
Roseicyclus mahoneyensis DSM 16097 [QGGW]
17060
16986
-
Gln
TTG
[ENA]
¡û
>W1810603220
QGKU01000026
Alphaproteobacteria
Meridianimarinicoccus roseus TG-679 [QGKU]
188513
188587
+
Gln
TTG
[ENA]
¡û
>W1810762288
QPMK01000012
Alphaproteobacteria
Thalassococcus profundi WRAS1 [QPMK]
128120
128046
-
Gln
TTG
[ENA]
¡û
>W1810914898
QVQC01000041
Alphaproteobacteria
Rhodobacteraceae bacterium W635 [QVQC]
294
368
+
Gln
TTG
[ENA]
¡û
>C151006132
CP004372
Alphaproteobacteria
Roseibacterium elongatum DSM 19469 DFL-43 [CP004372]
497474
497548
+
Gln
TTG
[Ensembl]
¡û
>WENV028938
AACY021156965
Marine microbial communities from Global Ocean Sampling (GOS)
290
214
-
Gln
TTG
[ENA]
>WENV032056
AACY021415914
Marine microbial communities from Global Ocean Sampling (GOS)
271
195
-
Gln
TTG
[ENA]
>WENV070861
AACY023825908
Marine microbial communities from Global Ocean Sampling (GOS)
1290
1366
+
Gln
TTG
[ENA]
>WENV071419
AACY023847247
Marine microbial communities from Global Ocean Sampling (GOS)
476
400
-
Gln
TTG
[ENA]
>W1610661268
LJSY01000025
Alphaproteobacteria
Rhodobacteraceae bacterium HLUCCO18 [LJSY]
566
492
-
Gln
TTG
[ENA]
¡û
>W1610939029
LURC01000145
Alphaproteobacteria
Sphingopyxis sp. REDSEA-S24_B7 [LURC]
211
285
+
Gln
TTG
[ENA]
¡û
>W1710015357
AQQP01000006
Alphaproteobacteria
Phaeobacter sp. 22II1-1F12B [AQQP]
371119
371193
+
Gln
TTG
[ENA]
¡û
>W1710015454
AQQR01000012
Alphaproteobacteria
Marinibacterium profundimaris [AQQR]
46624
46698
+
Gln
TTG
[ENA]
¡û
>W1710518511
FNEB01000003
Alphaproteobacteria
Lutimaribacter saemankumensis [FNEB]
2213
2139
-
Gln
TTG
[ENA]
¡û
>W1710524216
FNIO01000001
Alphaproteobacteria
Lutimaribacter pacificus [FNIO]
917742
917816
+
Gln
TTG
[ENA]
¡û
>W1710538991
FNUZ01000001
Alphaproteobacteria
Thalassococcus halodurans [FNUZ]
492052
491978
-
Gln
TTG
[ENA]
¡û
>W1710542576
FNZG01000002
Alphaproteobacteria
Pseudooceanicola nitratireducens [FNZG]
982196
982122
-
Gln
TTG
[ENA]
¡û
>W1710543820
FOAI01000002
Alphaproteobacteria
Roseivivax marinus [FOAI]
5392
5318
-
Gln
TTG
[ENA]
¡û
>W1710546865
FOCM01000004
Alphaproteobacteria
Palleronia pelagia pelagius [FOCM]
288961
289035
+
Gln
TTG
[ENA]
¡û
>W1710558474
FOLX01000001
Alphaproteobacteria
Pseudooceanicola nitratireducens [FOLX]
978854
978780
-
Gln
TTG
[ENA]
¡û
>W1710559524
FOMS01000001
Alphaproteobacteria
Roseivivax sediminis [FOMS]
578510
578436
-
Gln
TTG
[ENA]
¡û
>W1710573898
FOXV01000017
Alphaproteobacteria
Roseivivax halotolerans [FOXV]
4186
4112
-
Gln
TTG
[ENA]
¡û
>W1710574579
FOYI01000014
Alphaproteobacteria
Poseidonocella sedimentorum [FOYI]
60546
60472
-
Gln
TTG
[ENA]
¡û
>W1710575814
FOZM01000003
Alphaproteobacteria
Yoonia litorea [FOZM]
215655
215581
-
Gln
TTG
[ENA]
¡û
>W1710587507
FQYO01000003
Alphaproteobacteria
Wenxinia saemankumensis [FQYO]
125085
125011
-
Gln
TTG
[ENA]
¡û
>W1710588027
FQZA01000004
Alphaproteobacteria
Palleronia salina salinus [FQZA]
293829
293903
+
Gln
TTG
[ENA]
¡û
>W1710589235
FQZZ01000001
Alphaproteobacteria
Lutimaribacter pacificus [FQZZ]
320427
320353
-
Gln
TTG
[ENA]
¡û
>W1710591890
FRCB01000003
Alphaproteobacteria
Roseovarius litoreus [FRCB]
399380
399306
-
Gln
TTG
[ENA]
¡û
>W1710599350
FTOQ01000018
Alphaproteobacteria
Roseivivax lentus [FTOQ]
5630
5556
-
Gln
TTG
[ENA]
¡û
>W1710600134
FTPS01000001
Alphaproteobacteria
Pontibaca methylaminivorans [FTPS]
907283
907357
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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