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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656348 (63 seq.)
>W1711934394
NAJR01000003
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
179650
179576
-
Gln
TTG
[ENA]
¡û
>W1711934395
NAJR01000003
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
179553
179479
-
Gln
TTG
[ENA]
¡û
>W1711934398
NAJR01000003
Gammaproteobacteria
Shewanella sp. Shew256 [NAJR]
179212
179138
-
Gln
TTG
[ENA]
¡û
>W1712080448
NGZL01000024
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
62066
61992
-
Gln
TTG
[ENA]
¡û
>W1712080451
NGZL01000024
Gammaproteobacteria
Shewanella putrefaciens [NGZL]
61725
61651
-
Gln
TTG
[ENA]
¡û
>WENV013076
AACY020358049
Marine microbial communities from Global Ocean Sampling (GOS)
218
294
+
Gln
TTG
[ENA]
>C022219
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1184439
1184513
+
Gln
TTG
[Ensembl]
¡û
>C022220
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1184536
1184610
+
Gln
TTG
[Ensembl]
¡û
>C022223
CP000469
Gammaproteobacteria
Shewanella sp. ANA-3 [CP000469]
1184893
1184967
+
Gln
TTG
[Ensembl]
¡û
>C022321
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1176861
1176935
+
Gln
TTG
[Ensembl]
¡û
>C022322
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1176958
1177032
+
Gln
TTG
[Ensembl]
¡û
>C022325
CP000446
Gammaproteobacteria
Shewanella sp. MR-4 [CP000446]
1177299
1177373
+
Gln
TTG
[Ensembl]
¡û
>C022417
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1239208
1239282
+
Gln
TTG
[Ensembl]
¡û
>C022418
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1239305
1239379
+
Gln
TTG
[Ensembl]
¡û
>C022421
CP000444
Gammaproteobacteria
Shewanella sp. MR-7 [CP000444]
1239646
1239720
+
Gln
TTG
[Ensembl]
¡û
>C022921
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
1229802
1229876
+
Gln
TTG
[Ensembl]
¡û
>C022922
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
1229898
1229972
+
Gln
TTG
[Ensembl]
¡û
>C022925
AE014299
Gammaproteobacteria
Shewanella oneidensis MR-1 [AE014299]
1230253
1230327
+
Gln
TTG
[Ensembl]
¡û
>WENV180310698
OBJT01013246
[OBJT] soil metagenome; soil
1219
1293
+
Gln
TTG
[ENA]
¢þ
>W141171251
AXZL01000076
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
27999
27925
-
Gln
TTG
[ENA]
¡û
>W141171252
AXZL01000076
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
27902
27828
-
Gln
TTG
[ENA]
¡û
>W141171255
AXZL01000076
Gammaproteobacteria
Shewanella decolorationis S12 [AXZL]
27545
27471
-
Gln
TTG
[ENA]
¡û
>WENV021005
AACY020561423
Marine microbial communities from Global Ocean Sampling (GOS)
371
447
+
Gln
TTG
[ENA]
>C181057582
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
2349311
2349237
-
Gln
TTG
-
¡û
>C181057583
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
2349214
2349140
-
Gln
TTG
-
¡û
>C181057586
CP022089
Gammaproteobacteria
Shewanella sp. FDAARGOS_354 [CP022089]
2348860
2348786
-
Gln
TTG
-
¡û
>C181062987
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3590426
3590352
-
Gln
TTG
-
¡û
>C181062988
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3590329
3590255
-
Gln
TTG
-
¡û
>C181062991
CP022358
Gammaproteobacteria
Shewanella bicestrii JAB-1 [CP022358]
3589972
3589898
-
Gln
TTG
-
¡û
>W141520036
JGVI01000030
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
52806
52880
+
Gln
TTG
[ENA]
¡û
>W141520037
JGVI01000030
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
52902
52976
+
Gln
TTG
[ENA]
¡û
>W141520040
JGVI01000030
Gammaproteobacteria
Shewanella xiamenensis [JGVI]
53256
53330
+
Gln
TTG
[ENA]
¡û
>C191205219
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3242583
3242657
+
Gln
TTG
-
¡û
>C191205220
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3242680
3242754
+
Gln
TTG
-
¡û
>C191205223
LR134303
Gammaproteobacteria
Shewanella putrefaciens NCTC12093 [LR134303]
3243021
3243095
+
Gln
TTG
-
¡û
>W09104085
AALH01000080
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
92
166
+
Gln
TTG
[ENA]
¡û
>W09104088
AALH01000080
Gammaproteobacteria
Shewanella sp. ANA-3 [AALH]
449
523
+
Gln
TTG
[ENA]
¡û
>W09104637
AALX01000087
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
250
324
+
Gln
TTG
[ENA]
¡û
>W09104638
AALX01000087
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
347
421
+
Gln
TTG
[ENA]
¡û
>W09104641
AALX01000087
Gammaproteobacteria
Shewanella sp. MR-4 [AALX]
688
762
+
Gln
TTG
[ENA]
¡û
>W1910913781
NHRI01000012
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
38032
37958
-
Gln
TTG
[ENA]
¡û
>W1910913782
NHRI01000012
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
37935
37861
-
Gln
TTG
[ENA]
¡û
>W1910913785
NHRI01000012
Gammaproteobacteria
Shewanella sp. BC20 [NHRI]
37578
37504
-
Gln
TTG
[ENA]
¡û
>W1810073431
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
259949
259875
-
Gln
TTG
[ENA]
¡û
>W1810073432
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
259852
259778
-
Gln
TTG
[ENA]
¡û
>W1810073434
PEGD01000002
Gammaproteobacteria
Shewanella xiamenensis AS58 [PEGD]
259697
259623
-
Gln
TTG
[ENA]
¡û
>W1810587769
QFLG01000049
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
4705
4631
-
Gln
TTG
[ENA]
¡û
>W1810587770
QFLG01000049
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
4608
4534
-
Gln
TTG
[ENA]
¡û
>W1810587773
QFLG01000049
Gammaproteobacteria
Shewanella xiamenensis DCB2-1 [QFLG]
4254
4180
-
Gln
TTG
[ENA]
¡û
>W1511403530
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
1090923
1090997
+
Gln
TTG
[ENA]
¡û
>W1511403553
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
2294058
2293984
-
Gln
TTG
[ENA]
¡û
>W1511403554
JTLE01000094
Gammaproteobacteria
Shewanella sp. ZOR0012 [JTLE]
2293961
2293887
-
Gln
TTG
[ENA]
¡û
>W121103354
AKZL01000154
Gammaproteobacteria
Shewanella sp. POL2 [AKZL]
4362
4288
-
Gln
TTG
[ENA]
¡û
>W1610617875
LGYY01000191
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
40984
41058
+
Gln
TTG
[ENA]
¡û
>W1610617876
LGYY01000191
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
41081
41155
+
Gln
TTG
[ENA]
¡û
>W1610617879
LGYY01000191
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
41435
41509
+
Gln
TTG
[ENA]
¡û
>W1710692490
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
97723
97797
+
Gln
TTG
[ENA]
¡û
>W1710692491
JZWJ01000135
Gammaproteobacteria
Shewanella xiamenensis [JZWJ]
97820
97894
+
Gln
TTG
[ENA]
¡û
>W1710706693
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
384612
384538
-
Gln
TTG
[ENA]
¡û
>W1710706694
LDOA01000001
Gammaproteobacteria
Shewanella xiamenensis [LDOA]
384515
384441
-
Gln
TTG
[ENA]
¡û
>W1710744050
LGYY01000191
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
40984
41058
+
Gln
TTG
[ENA]
¡û
>W1710744051
LGYY01000191
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
41081
41155
+
Gln
TTG
[ENA]
¡û
>W1710744054
LGYY01000191
Gammaproteobacteria
Shewanella sp. Sh95 [LGYY]
41435
41509
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK