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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
|
BLAST
|
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656407 (53 seq.)
>W1710890925
LNCE01000072
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
15799
15873
+
Arg
TCT
[ENA]
¡û
>W1710924018
LOCQ01000052
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
64346
64272
-
Arg
TCT
[ENA]
¡û
>W1711033426
LRHW01000083
Betaproteobacteria
Janthinobacterium lividum [LRHW]
50672
50598
-
Arg
TCT
[ENA]
¡û
>W1711033449
LRHX01000006
Betaproteobacteria
Janthinobacterium sp. MP5059B [LRHX]
204699
204773
+
Arg
TCT
[ENA]
¡û
>W1711033513
LRHY01000035
Betaproteobacteria
Janthinobacterium sp. HH100 [LRHY]
61667
61593
-
Arg
TCT
[ENA]
¡û
>W1711033577
LRHZ01000005
Betaproteobacteria
Janthinobacterium sp. HH102 [LRHZ]
242529
242603
+
Arg
TCT
[ENA]
¡û
>W1711033641
LRIA01000044
Betaproteobacteria
Janthinobacterium sp. HH103 [LRIA]
4089
4015
-
Arg
TCT
[ENA]
¡û
>W1711033725
LRIB01000043
Betaproteobacteria
Janthinobacterium sp. HH104 [LRIB]
235793
235867
+
Arg
TCT
[ENA]
¡û
>W1711033785
LRIC01000061
Betaproteobacteria
Janthinobacterium sp. HH106 [LRIC]
34916
34990
+
Arg
TCT
[ENA]
¡û
>W1711033799
LRID01000029
Betaproteobacteria
Janthinobacterium sp. HH107 [LRID]
36194
36120
-
Arg
TCT
[ENA]
¡û
>W1711308641
MAQB02000009
Betaproteobacteria
Janthinobacterium lividum [MAQB]
37408
37334
-
Arg
TCT
[ENA]
¡û
>W1712004483
NEGX01000058
Betaproteobacteria
Janthinobacterium sp. GW460W [NEGX]
2387
2313
-
Arg
TCT
[ENA]
¡û
>W1712004562
NEGY01000063
Betaproteobacteria
Janthinobacterium sp. GW460P [NEGY]
3206
3132
-
Arg
TCT
[ENA]
¡û
>W1712004653
NEGZ01000088
Betaproteobacteria
Janthinobacterium sp. GW458P [NEGZ]
2281
2207
-
Arg
TCT
[ENA]
¡û
>W1712004715
NEHA01000075
Betaproteobacteria
Janthinobacterium sp. GW456W [NEHA]
2232
2158
-
Arg
TCT
[ENA]
¡û
>W1712004805
NEHB01000028
Betaproteobacteria
Janthinobacterium sp. GW456P [NEHB]
22973
23047
+
Arg
TCT
[ENA]
¡û
>C171010535
CP011319
Betaproteobacteria
Janthinobacterium sp. 1_2014MBL_MicDiv [CP011319]
3674638
3674564
-
Arg
TCT
-
¡û
>C171094986
CP019510
Betaproteobacteria
Janthinobacterium sp. LM6 [CP019510]
2702225
2702299
+
Arg
TCT
-
¡û
>WENV180024832
FTIJ01097591
[FTIJ] metagenome; soil
332
258
-
Arg
TCT
[ENA]
¢þ
>WENV180024834
FTIJ01103064
[FTIJ] metagenome; soil
2
76
+
Arg
TCT
[ENA]
¢þ
>W141484484
JFYR01000034
Betaproteobacteria
Janthinobacterium lividum [JFYR]
211743
211817
+
Arg
TCT
[ENA]
¡û
>C181081123
CP023422
Betaproteobacteria
Janthinobacterium svalbardensis PAMC 27463 [CP023422]
2774105
2774179
+
Arg
TCT
-
¡û
>C191098119
CP033019
Betaproteobacteria
Janthinobacterium agaricidamnosum BHSEK [CP033019]
2044826
2044900
+
Arg
TCT
-
¡û
>C191188123
CP041185
Betaproteobacteria
Janthinobacterium tructae SNU WT3 [CP041185]
234337
234411
+
Arg
TCT
-
¡û
>W141821496
JQNP01000001
Betaproteobacteria
Janthinobacterium sp. RA13 [JQNP]
363521
363595
+
Arg
TCT
[ENA]
¡û
>W1910942562
NJGY01000001
Betaproteobacteria
Janthinobacterium sp. PC23-8 [NJGY]
205337
205263
-
Arg
TCT
[ENA]
¡û
>W1911199885
NRDQ01000079
Betaproteobacteria
Janthinobacterium sp. AD80 [NRDQ]
2118
2044
-
Arg
TCT
[ENA]
¡û
>W1810068199
PDZI01000014
Betaproteobacteria
Janthinobacterium sp. BJB303 [PDZI]
107142
107216
+
Arg
TCT
[ENA]
¡û
>W1810068231
PDZJ01000001
Betaproteobacteria
Janthinobacterium sp. BJB301 [PDZJ]
714625
714699
+
Arg
TCT
[ENA]
¡û
>W1810068312
PDZK01000001
Betaproteobacteria
Janthinobacterium sp. BJB446 [PDZK]
735049
735123
+
Arg
TCT
[ENA]
¡û
>W1810068427
PDZL01000014
Betaproteobacteria
Janthinobacterium sp. BJB426 [PDZL]
26341
26267
-
Arg
TCT
[ENA]
¡û
>W1810068493
PDZM01000006
Betaproteobacteria
Janthinobacterium sp. BJB312 [PDZM]
301957
301883
-
Arg
TCT
[ENA]
¡û
>W1810068556
PDZN01000003
Betaproteobacteria
Janthinobacterium sp. BJB304 [PDZN]
84293
84219
-
Arg
TCT
[ENA]
¡û
>W1810068650
PDZO02000010
Betaproteobacteria
Janthinobacterium sp. BJB1 [PDZO]
67050
66976
-
Arg
TCT
[ENA]
¡û
>W1810069782
PEBS01000061
Betaproteobacteria
Janthinobacterium sp. ROICE36 [PEBS]
13394
13468
+
Arg
TCT
[ENA]
¡û
>W1810071342
PEEQ01000001
Betaproteobacteria
Janthinobacterium sp. 13 [PEEQ]
647108
647034
-
Arg
TCT
[ENA]
¡û
>W1810072840
PEFN01000001
Betaproteobacteria
Janthinobacterium sp. 35 [PEFN]
274960
274886
-
Arg
TCT
[ENA]
¡û
>W1810089371
PGES01000001
Betaproteobacteria
Janthinobacterium sp. 67 [PGES]
392014
392088
+
Arg
TCT
[ENA]
¡û
>W1810121248
PHUG01000001
Betaproteobacteria
Janthinobacterium sp. 64 [PHUG]
133904
133978
+
Arg
TCT
[ENA]
¡û
>W1810172792
PJMQ01000001
Betaproteobacteria
Janthinobacterium sp. 61 [PJMQ]
722752
722826
+
Arg
TCT
[ENA]
¡û
>W1810576785
QENT01000001
Betaproteobacteria
Janthinobacterium sp. 78 [QENT]
2721839
2721913
+
Arg
TCT
[ENA]
¡û
>W1511355721
JRRH01000063
Betaproteobacteria
Janthinobacterium lividum MTR [JRRH]
42604
42530
-
Arg
TCT
[ENA]
¡û
>W1511588758
LBCO01000020
Betaproteobacteria
Janthinobacterium sp. KBS0711 [LBCO]
201060
201134
+
Arg
TCT
[ENA]
¡û
>W1610751321
LNCE01000072
Betaproteobacteria
Janthinobacterium sp. Ant5-2-1 [LNCE]
15799
15873
+
Arg
TCT
[ENA]
¡û
>W1610781664
LOCQ01000052
Betaproteobacteria
Janthinobacterium psychrotolerans S3-2 [LOCQ]
64346
64272
-
Arg
TCT
[ENA]
¡û
>W1611056230
MAQB01000007
Betaproteobacteria
Janthinobacterium lividum [MAQB]
24604
24530
-
Arg
TCT
[ENA]
¡û
>W1710509368
FMXD01000005
Betaproteobacteria
Janthinobacterium sp. 551a [FMXD]
41432
41358
-
Arg
TCT
[ENA]
¡û
>W1710517059
FNDA01000004
Betaproteobacteria
Janthinobacterium sp. YR213 [FNDA]
399178
399252
+
Arg
TCT
[ENA]
¡û
>W1710522195
FNHA01000004
Betaproteobacteria
Janthinobacterium sp. OK676 [FNHA]
391847
391921
+
Arg
TCT
[ENA]
¡û
>W1710556765
FOKL01000007
Betaproteobacteria
Janthinobacterium sp. 344 [FOKL]
376764
376838
+
Arg
TCT
[ENA]
¡û
>W1710581715
FPKH01000003
Betaproteobacteria
Janthinobacterium lividum [FPKH]
174315
174241
-
Arg
TCT
[ENA]
¡û
>W1710596874
FTMV01000013
Betaproteobacteria
Janthinobacterium sp. TND4EL3 [FTMV]
168138
168212
+
Arg
TCT
[ENA]
¡û
>W1710720651
LFKP01000008
Betaproteobacteria
Janthinobacterium lividum [LFKP]
1179362
1179288
-
Arg
TCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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