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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
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1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656721 (121 seq.)
>W1710864186
LMFR01000010
Actinomycetota
Microbacterium sp. Root53 [LMFR]
47659
47585
-
Arg
CCT
[ENA]
¡û
>W1710874129
LMNI01000011
Actinomycetota
Microbacterium sp. Leaf288 [LMNI]
838304
838232
-
Arg
CCT
[ENA]
¡û
>W1710875855
LMOS01000006
Actinomycetota
Curtobacterium sp. Leaf154 [LMOS]
67318
67244
-
Arg
CCT
[ENA]
¡û
>W1710876566
LMPI01000012
Actinomycetota
Microbacterium sp. Leaf347 [LMPI]
153045
152971
-
Arg
CCT
[ENA]
¡û
>W1710876669
LMPK01000038
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
150245
150171
-
Arg
CCT
[ENA]
¡û
>W1711003152
LQGV01000001
Actinomycetota
Microbacterium sp. TNHR37B [LQGV]
1141654
1141580
-
Arg
CCT
[ENA]
¡û
>W131110270
APJN01000021
Actinomycetota
Curtobacterium flaccumfaciens UCD-AKU [APJN]
32949
32875
-
Arg
CCT
[ENA]
¡û
>W1711082386
LSTV01000001
Actinomycetota
Microbacterium oleivorans [LSTV]
394800
394872
+
Arg
CCT
[ENA]
¡û
>W131161924
AQYD01000007
Actinomycetota
Microbacterium sp. 292MF [AQYD]
251646
251718
+
Arg
CCT
[ENA]
¡û
>W131162183
AQYI01000007
Actinomycetota
Microbacterium paraoxydans 77MFTsu3.2 [AQYI]
569525
569451
-
Arg
CCT
[ENA]
¡û
>W131162276
AQYK01000002
Actinomycetota
Leifsonia sp. 109 [AQYK]
704430
704358
-
Arg
CCT
[ENA]
¡û
>W131184650
ARTB01000004
Actinomycetota
Cryocola sp. 340MFSha3.1 [ARTB]
25884
25958
+
Arg
CCT
[ENA]
¡û
>W131218480
ATXT01000015
Actinomycetota
Humibacter albus DSM 18994 [ATXT]
22695
22621
-
Arg
CCT
[ENA]
¡û
>W1711318573
MAYO01000002
Actinomycetota
Microbacterium oleivorans [MAYO]
401903
401975
+
Arg
CCT
[ENA]
¡û
>W1711343391
MCIG01000052
Actinomycetota
Curtobacterium sp. UCD-KPL2560 [MCIG]
10633
10559
-
Arg
CCT
[ENA]
¡û
>W1711386960
MEGA01000116
Actinomycetota
Microbacterium sp. SCN 71-21 [MEGA]
2610
2684
+
Arg
CCT
[ENA]
¡û
>W1711460943
MJGJ01000010
Actinomycetota
Curtobacterium sp. MCBA15_003 [MJGJ]
66857
66783
-
Arg
CCT
[ENA]
¡û
>W1711460995
MJGK01000024
Actinomycetota
Curtobacterium sp. MCBA15_004 [MJGK]
3758
3684
-
Arg
CCT
[ENA]
¡û
>W1711461014
MJGL01000001
Actinomycetota
Curtobacterium sp. MCBA15_005 [MJGL]
60176
60250
+
Arg
CCT
[ENA]
¡û
>W1711461060
MJGM01000001
Actinomycetota
Curtobacterium sp. MCBA15_007 [MJGM]
663718
663792
+
Arg
CCT
[ENA]
¡û
>W1711461127
MJGN01000016
Actinomycetota
Curtobacterium sp. MCBA15_008 [MJGN]
131309
131383
+
Arg
CCT
[ENA]
¡û
>W1711461181
MJGO01000040
Actinomycetota
Curtobacterium sp. MCBA15_009 [MJGO]
26591
26665
+
Arg
CCT
[ENA]
¡û
>W1711461193
MJGP01000002
Actinomycetota
Curtobacterium sp. MCBA15_012 [MJGP]
52073
51999
-
Arg
CCT
[ENA]
¡û
>W1711461252
MJGQ01000006
Actinomycetota
Curtobacterium sp. MCBA15_013 [MJGQ]
79704
79630
-
Arg
CCT
[ENA]
¡û
>W1711461381
MJGT01000002
Actinomycetota
Curtobacterium sp. MMLR14_002 [MJGT]
39722
39650
-
Arg
CCT
[ENA]
¡û
>W1711461459
MJGU01000024
Actinomycetota
Curtobacterium sp. MMLR14_006 [MJGU]
66211
66137
-
Arg
CCT
[ENA]
¡û
>W1711461557
MJGX01000035
Actinomycetota
Curtobacterium sp. MMLR14_014 [MJGX]
47094
47166
+
Arg
CCT
[ENA]
¡û
>W1711501790
MKSA01000006
Actinomycetota
Microbacterium sp. 70-38 [MKSA]
2522
2596
+
Arg
CCT
[ENA]
¡û
>W1711502190
MKSL01000011
Actinomycetota
Microbacterium sp. 71-23 [MKSL]
174787
174861
+
Arg
CCT
[ENA]
¡û
>W1711719884
MTIO01000002
Actinomycetota
Microbacterium oleivorans [MTIO]
172889
172963
+
Arg
CCT
[ENA]
¡û
>C171063800
CP017580
Actinomycetota
Curtobacterium sp. BH-2-1-1 [CP017580]
2184103
2184177
+
Arg
CCT
-
¡û
>C171083620
CP018783
Actinomycetota
Curtobacterium pusillum AA3 [CP018783]
1934988
1934914
-
Arg
CCT
-
¡û
>WENV180029267
FTJI01329143
[FTJI] metagenome; soil
293
219
-
Arg
CCT
[ENA]
¢þ
>WENV180030674
FTJN01002612
[FTJN] metagenome; soil
1972
1898
-
Arg
CCT
[ENA]
¢þ
>WENV180034787
FTKR01325291
[FTKR] metagenome; soil
293
219
-
Arg
CCT
[ENA]
¢þ
>WENV180304743
OBJI01352773
[OBJI] soil metagenome; soil
92
18
-
Arg
CCT
[ENA]
¢þ
>W141041468
AMCB01000847
Actinomycetota
Microbacterium sp. AO20a11 [AMCB]
611
685
+
Arg
CCT
[ENA]
¡û
>WENV180693843
OCZS011663135
[OCZS] soil metagenome; soil
182
110
-
Arg
CCT
[ENA]
¢þ
>W141223138
BACZ01000311
Actinomycetota
Curtobacterium sp. B18 [BACZ]
13132
13058
-
Arg
CCT
[ENA]
¡û
>W141243144
CAJF01000010
Actinomycetota
Microbacterium yannicii PS01 [CAJF]
99686
99612
-
Arg
CCT
[ENA]
¡û
>WENV183728510
PJTQ01000097
[PJTQ] soil metagenome; Soil (3) enriched on wood chips
137649
137721
+
Arg
CCT
[ENA]
¢þ
>WENV183735168
PJUA01001673
[PJUA] soil metagenome; Soil enriched on filter paper: beechwood xylan treatment
3024
2952
-
Arg
CCT
[ENA]
¢þ
>WENV183736300
PJUC01000484
[PJUC] soil metagenome; Soil enriched on filter paper
6792
6864
+
Arg
CCT
[ENA]
¢þ
>WENV183741365
PJUF01100020
[PJUF] feces metagenome; Chicken feces (3) enriched on wood chips
204
132
-
Arg
CCT
[ENA]
¢þ
>WENV170176781
CEOS01122556
[CEOS] marine metagenome genome assembly TARA_056_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
854
780
-
Arg
CCT
[ENA]
¢þ
>WENV170193329
CEPH01061554
[CEPH] marine metagenome genome assembly TARA_048_SRF_0.1-0.22 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
286
360
+
Arg
CCT
[ENA]
¢þ
>WENV170372728
CETS01129065
[CETS] marine metagenome genome assembly TARA_122_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
321
247
-
Arg
CCT
[ENA]
¢þ
>WENV170763463
LWDU01010389
[LWDU] hydrothermal vent metagenome; deep sea hydrothermal plume seawater
1303
1229
-
Arg
CCT
[ENA]
¢þ
>WENV170837978
MDSZ01159143
[MDSZ] marine metagenome; seawater
7069
7143
+
Arg
CCT
[ENA]
¢þ
>W141484326
JFYO01000006
Actinomycetota
Microbacterium oleivorans [JFYO]
76243
76315
+
Arg
CCT
[ENA]
¡û
>C191055989
CP027869
Actinomycetota
Curtobacterium sp. SGAir0471 [CP027869]
3094700
3094626
-
Arg
CCT
-
¡û
>C191074815
CP031421
Actinomycetota
Microbacterium oleivorans A9 [CP031421]
2022597
2022524
-
Arg
CCT
-
¡û
>C191074898
CP031423
Actinomycetota
Microbacterium lemovicicum Viu22 [CP031423]
2326712
2326640
-
Arg
CCT
-
¡û
>W141565015
JIBF01000009
Actinomycetota
Microbacterium sp. UNC423CL45Tsu [JIBF]
254655
254729
+
Arg
CCT
[ENA]
¡û
>W141702218
JMLI01000015
Actinomycetota
Curtobacterium sp. UNCCL17 [JMLI]
64922
64848
-
Arg
CCT
[ENA]
¡û
>W141817478
JQKT01000007
Actinomycetota
Microbacterium sp. UNCCL10 [JQKT]
405621
405695
+
Arg
CCT
[ENA]
¡û
>W1910832059
MYFP01000020
Actinomycetota
Microbacterium sp. MEC084 [MYFP]
42103
42029
-
Arg
CCT
[ENA]
¡û
>W1911426073
NXIA01000019
Actinomycetota
Curtobacterium sp. 'Ferrero' [NXIA]
35235
35161
-
Arg
CCT
[ENA]
¡û
>W1911496224
OCMI01000004
Actinomycetota
Curtobacterium sp. 314Chir4.1 [OCMI]
76308
76236
-
Arg
CCT
[ENA]
¡û
>W1911497864
OCST01000001
Actinomycetota
Salinibacterium xinjiangense CGMCC 1.05381 [OCST]
367904
367977
+
Arg
CCT
[ENA]
¡û
>W1911535327
OLMV01000001
Actinomycetota
Microbacterium timonense Marseille-P5731 [OLMV]
1155160
1155232
+
Arg
CCT
[ENA]
¡û
>W1911631217
PUEZ01000002
Actinomycetota
Curtobacterium flaccumfaciens pv. flaccumfaciens CFBP3418 [PUEZ]
805607
805681
+
Arg
CCT
[ENA]
¡û
>W1911682016
QKLC01000029
Actinomycetota
Curtobacterium sp. MCPF17_003 [QKLC]
14498
14572
+
Arg
CCT
[ENA]
¡û
>W1911685065
QKSE01000006
Actinomycetota
Curtobacterium sp. MCPF17_051 [QKSE]
73646
73572
-
Arg
CCT
[ENA]
¡û
>W1911685235
QKSH01000038
Actinomycetota
Curtobacterium sp. MCPF17_021 [QKSH]
16763
16835
+
Arg
CCT
[ENA]
¡û
>W1911685251
QKSI01000007
Actinomycetota
Curtobacterium sp. MCPF17_002 [QKSI]
74329
74255
-
Arg
CCT
[ENA]
¡û
>W1911685322
QKSJ01000014
Actinomycetota
Curtobacterium sp. MCPF17_018 [QKSJ]
14448
14522
+
Arg
CCT
[ENA]
¡û
>W1911685799
QKTR01000018
Actinomycetota
Curtobacterium sp. MCBD17_026 [QKTR]
14417
14491
+
Arg
CCT
[ENA]
¡û
>W1911783399
QXTG01000001
Actinomycetota
Amnibacterium setariae DD4a [QXTG]
707542
707468
-
Arg
CCT
[ENA]
¡û
>SRA1003035
SRR002326.163656
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
198
124
-
Arg
CCT
[SRA]
>SRA1003043
SRR002326.166282
The Glacier Ice Metagenome Of The Northern Schneeferner (SRP000240)
198
124
-
Arg
CCT
[SRA]
>W1810169247
PJJX01000002
Actinomycetota
Terrimesophilobacter mesophilus CGMCC1.10440 [PJJX]
1081809
1081737
-
Arg
CCT
[ENA]
¡û
>W1810675477
QKLE01000012
Actinomycetota
Curtobacterium sp. MCSS17_011 [QKLE]
75301
75227
-
Arg
CCT
[ENA]
¡û
>W1810675592
QKLH01000001
Actinomycetota
Curtobacterium sp. MCLR17_043 [QKLH]
31219
31145
-
Arg
CCT
[ENA]
¡û
>W1810680956
QKSM01000012
Actinomycetota
Curtobacterium sp. MCSS17_008 [QKSM]
78606
78680
+
Arg
CCT
[ENA]
¡û
>W1810681049
QKSO01000008
Actinomycetota
Curtobacterium sp. MCSS17_006 [QKSO]
73046
72972
-
Arg
CCT
[ENA]
¡û
>W1810681090
QKSP01000007
Actinomycetota
Curtobacterium sp. MCSS17_005 [QKSP]
99959
100033
+
Arg
CCT
[ENA]
¡û
>W1810681173
QKSQ01000022
Actinomycetota
Curtobacterium sp. MCSS17_016 [QKSQ]
16692
16766
+
Arg
CCT
[ENA]
¡û
>W1810681263
QKSS01000009
Actinomycetota
Curtobacterium sp. MCJR17_020 [QKSS]
5338
5264
-
Arg
CCT
[ENA]
¡û
>W1810681369
QKSU01000013
Actinomycetota
Curtobacterium sp. MCLR17_059 [QKSU]
16546
16620
+
Arg
CCT
[ENA]
¡û
>W1810681374
QKSV01000001
Actinomycetota
Curtobacterium sp. MCLR17_058 [QKSV]
30711
30639
-
Arg
CCT
[ENA]
¡û
>W1810681432
QKSW01000006
Actinomycetota
Curtobacterium sp. MCLR17_057 [QKSW]
87908
87982
+
Arg
CCT
[ENA]
¡û
>W1810681498
QKSX01000017
Actinomycetota
Curtobacterium sp. MCLR17_055 [QKSX]
16623
16695
+
Arg
CCT
[ENA]
¡û
>W1810681518
QKSY01000004
Actinomycetota
Curtobacterium sp. MCLR17_054 [QKSY]
79335
79263
-
Arg
CCT
[ENA]
¡û
>W1810681583
QKSZ01000008
Actinomycetota
Curtobacterium sp. MCLR17_053 [QKSZ]
75163
75089
-
Arg
CCT
[ENA]
¡û
>W1810681629
QKTA01000007
Actinomycetota
Curtobacterium sp. MCLR17_051 [QKTA]
75191
75117
-
Arg
CCT
[ENA]
¡û
>W1810681684
QKTB01000013
Actinomycetota
Curtobacterium sp. MCLR17_045 [QKTB]
16645
16717
+
Arg
CCT
[ENA]
¡û
>W1810681728
QKTC01000012
Actinomycetota
Curtobacterium sp. MCLR17_044 [QKTC]
56361
56289
-
Arg
CCT
[ENA]
¡û
>W1810681760
QKTD01000004
Actinomycetota
Curtobacterium sp. MCLR17_042 [QKTD]
97780
97854
+
Arg
CCT
[ENA]
¡û
>W1810681816
QKTE01000008
Actinomycetota
Curtobacterium sp. MCLR17_040 [QKTE]
75306
75234
-
Arg
CCT
[ENA]
¡û
>W1810681881
QKTF01000018
Actinomycetota
Curtobacterium sp. MCLR17_039 [QKTF]
14492
14566
+
Arg
CCT
[ENA]
¡û
>W1810681899
QKTG01000013
Actinomycetota
Curtobacterium sp. MCLR17_036 [QKTG]
8780
8706
-
Arg
CCT
[ENA]
¡û
>W1810681942
QKTH01000004
Actinomycetota
Curtobacterium sp. MCLR17_034 [QKTH]
132819
132893
+
Arg
CCT
[ENA]
¡û
>W1810682061
QKTJ01000019
Actinomycetota
Curtobacterium sp. MCLR17_031 [QKTJ]
18344
18416
+
Arg
CCT
[ENA]
¡û
>W1810684441
QKXI01000002
Actinomycetota
Leifsonia sp. ku-ls [QKXI]
126480
126553
+
Arg
CCT
[ENA]
¡û
>W1810861482
QTTX01000002
Actinomycetota
Microbacterium sp. 1294 [QTTX]
405762
405834
+
Arg
CCT
[ENA]
¡û
>W1511432649
JUGQ01000004
Actinomycetota
Microbacterium sp. CF335 [JUGQ]
305536
305464
-
Arg
CCT
[ENA]
¡û
>W1511509137
JXQU01000033
Actinomycetota
Curtobacterium flaccumfaciens MEB126 [JXQU]
72529
72455
-
Arg
CCT
[ENA]
¡û
>W1511528870
JYIY01000049
Actinomycetota
Microbacterium ginsengisoli DSM 18659 [JYIY]
3561
3635
+
Arg
CCT
[ENA]
¡û
>W1511528913
JYIZ01000015
Actinomycetota
Microbacterium terrae DSM 12510 [JYIZ]
4938
5010
+
Arg
CCT
[ENA]
¡û
>C161021917
CP009755
Actinomycetota
Curtobacterium sp. MR_MD2014 [CP009755]
3012310
3012236
-
Arg
CCT
[Ensembl]
¡û
>C161076871
CP014761
Actinomycetota
Leifsonia xyli SE134 [CP014761]
1286436
1286364
-
Arg
CCT
[Ensembl]
¡û
>W1610068338
BCRG01000003
Actinomycetota
Microbacterium oleivorans NBRC 103075 [BCRG]
74449
74521
+
Arg
CCT
[ENA]
¡û
>W1610588290
LDQC01000110
Actinomycetota
Curtobacterium luteum [LDQC]
5242
5168
-
Arg
CCT
[ENA]
¡û
>W1610726532
LMFR01000010
Actinomycetota
Microbacterium sp. Root53 [LMFR]
47659
47585
-
Arg
CCT
[ENA]
¡û
>W1610736475
LMNI01000011
Actinomycetota
Microbacterium sp. Leaf288 [LMNI]
838304
838232
-
Arg
CCT
[ENA]
¡û
>W1610738201
LMOS01000006
Actinomycetota
Curtobacterium sp. Leaf154 [LMOS]
67318
67244
-
Arg
CCT
[ENA]
¡û
>W1610738912
LMPI01000012
Actinomycetota
Microbacterium sp. Leaf347 [LMPI]
153045
152971
-
Arg
CCT
[ENA]
¡û
>W1610739015
LMPK01000038
Actinomycetota
Microbacterium sp. Leaf351 [LMPK]
150245
150171
-
Arg
CCT
[ENA]
¡û
>W1610853717
LQGV01000001
Actinomycetota
Microbacterium sp. TNHR37B [LQGV]
1141654
1141580
-
Arg
CCT
[ENA]
¡û
>W1610921171
LSTV01000001
Actinomycetota
Microbacterium oleivorans [LSTV]
394800
394872
+
Arg
CCT
[ENA]
¡û
>W1611061916
MAYO01000002
Actinomycetota
Microbacterium oleivorans [MAYO]
401903
401975
+
Arg
CCT
[ENA]
¡û
>W1710065711
BCRG01000003
Actinomycetota
Microbacterium oleivorans NBRC 103075 [BCRG]
74449
74521
+
Arg
CCT
[ENA]
¡û
>W1710516575
FNCR01000001
Actinomycetota
Microbacterium sp. 77mftsu3.1 [FNCR]
566991
566917
-
Arg
CCT
[ENA]
¡û
>W1710540811
FNXD01000015
Actinomycetota
Leifsonia sp. CL154 [FNXD]
31715
31787
+
Arg
CCT
[ENA]
¡û
>W1710561405
FOOD01000002
Actinomycetota
Curtobacterium sp. YR515 [FOOD]
95125
95051
-
Arg
CCT
[ENA]
¡û
>W1710565093
FOQZ01000001
Actinomycetota
Microbacterium saccharophilum unc380mfsha3.1 [FOQZ]
405638
405712
+
Arg
CCT
[ENA]
¡û
>W1710568285
FOTM01000015
Actinomycetota
Leifsonia sp. CL147 [FOTM]
70542
70470
-
Arg
CCT
[ENA]
¡û
>W1710575729
FOZJ01000003
Actinomycetota
Microbacterium sp. cf046 [FOZJ]
1125858
1125930
+
Arg
CCT
[ENA]
¡û
>W1710599960
FTPO01000001
Actinomycetota
Microbacterium sp. RU33B [FTPO]
650976
651050
+
Arg
CCT
[ENA]
¡û
>W1710707570
LDQC01000110
Actinomycetota
Curtobacterium luteum [LDQC]
5242
5168
-
Arg
CCT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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