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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.656942 (46 seq.)
>W1710785102
LJHO01000008
Alphaproteobacteria
Novosphingobium sp. AAP1 [LJHO]
92091
92017
-
Glu
TTC
[ENA]
¡û
>W1710785602
LJHZ01000099
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
8971
9045
+
Glu
TTC
[ENA]
¡û
>W1711072884
LSIA01000020
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
48097
48023
-
Glu
TTC
[ENA]
¡û
>W1711387024
MEGC01000070
Alphaproteobacteria
Novosphingobium sp. SCN 63-17 [MEGC]
5200
5126
-
Glu
TTC
[ENA]
¡û
>W1711437784
MIPT01000001
Alphaproteobacteria
Sphingomonas haloaromaticamans [MIPT]
4505684
4505758
+
Glu
TTC
[ENA]
¡û
>W1711506371
MKWI01000024
Alphaproteobacteria
Sphingobium sp. 66-54 [MKWI]
68057
68131
+
Glu
TTC
[ENA]
¡û
>W1711766429
MUYJ01000007
Alphaproteobacteria
Erythrobacter tepidarius [MUYJ]
137164
137238
+
Glu
TTC
[ENA]
¡û
>W131104470
APCQ01000489
Alphaproteobacteria
Novosphingobium sp. B-7 [APCQ]
5061
4987
-
Glu
TTC
[ENA]
¡û
>W131104472
APCQ01000489
Alphaproteobacteria
Novosphingobium sp. B-7 [APCQ]
4809
4735
-
Glu
TTC
[ENA]
¡û
>W131229836
AUHC01000001
Alphaproteobacteria
Erythrobacter cryptus DSM 12079 [AUHC]
54192
54118
-
Glu
TTC
[ENA]
¡û
>C014694
CP000248
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [CP000248]
2415278
2415352
+
Glu
TTC
[Ensembl]
¡û
>WENV181222772
OFDC01000239
[OFDC] hot springs metagenome; Water
35699
35773
+
Glu
TTC
[ENA]
¢þ
>WENV181227542
OFDN01015560
[OFDN] hot springs metagenome; Water
2500
2574
+
Glu
TTC
[ENA]
¢þ
>W141230397
BASZ01000006
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [BASZ]
329809
329883
+
Glu
TTC
[ENA]
¡û
>W141230398
BASZ01000006
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [BASZ]
329926
330000
+
Glu
TTC
[ENA]
¡û
>WENV170002836
AGTN01143933
[AGTN] bioreactor metagenome; poplar biomass
114
40
-
Glu
TTC
[ENA]
¢þ
>WENV170010891
APMI01033580
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
2224
2298
+
Glu
TTC
[ENA]
¢þ
>WENV170012078
APMI01117803
[APMI] wastewater metagenome; sequencing batch reactors (SBR) enriched microbial communities from a Danish wastwater
1503
1429
-
Glu
TTC
[ENA]
¢þ
>ENV08002201
ABON01008872
freshwater metagenome; microbial fraction from tilapia pond at Kent SeaTech (Salton Sea, CA)
78
4
-
Glu
TTC
[ENA]
¡û
>C191057050
CP028347
Alphaproteobacteria
Novosphingobium sp. THN1 [CP028347]
2891014
2891088
+
Glu
TTC
-
¡û
>C191121079
CP034179
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [CP034179]
3774034
3773960
-
Glu
TTC
-
¡û
>C191121080
CP034179
Alphaproteobacteria
Caenibius tardaugens NBRC 16725 [CP034179]
3773917
3773843
-
Glu
TTC
-
¡û
>C191170972
CP039695
Alphaproteobacteria
Novosphingobium sp. EMRT-2 [CP039695]
3512501
3512427
-
Glu
TTC
-
¡û
>W09100329
AAAV03000005
Alphaproteobacteria
Novosphingobium aromaticivorans DSM 12444 [AAAV]
73441
73515
+
Glu
TTC
[ENA]
¡û
>W1910231946
FPEH01000012
Alphaproteobacteria
Novosphingobium sp. NDB2Meth1 [FPEH]
155642
155568
-
Glu
TTC
[ENA]
¡û
>W1810109392
PHHF01000040
Alphaproteobacteria
Sphingomonas fennica K101 [PHHF]
47448
47522
+
Glu
TTC
[ENA]
¡û
>W1810195671
PKRT01000001
Alphaproteobacteria
Novosphingobium sp. TH158 [PKRT]
631974
632048
+
Glu
TTC
[ENA]
¡û
>W1810597610
QGHL01000007
Alphaproteobacteria
Novosphingobium meiothermophilum SYSU G00007 [QGHL]
786930
787004
+
Glu
TTC
[ENA]
¡û
>W1510019771
BBXA01000033
Alphaproteobacteria
Novosphingobium sp. MD-1 [BBXA]
142945
143019
+
Glu
TTC
[ENA]
¡û
>W1511356989
JRVC01000002
Alphaproteobacteria
Novosphingobium subterraneum DSM 12447 [JRVC]
202858
202932
+
Glu
TTC
[ENA]
¡û
>W1610076542
BCYV01000004
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
88337
88263
-
Glu
TTC
[ENA]
¡û
>W1610076544
BCYV01000004
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
88085
88011
-
Glu
TTC
[ENA]
¡û
>W1610076997
BCZE01000022
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
103384
103458
+
Glu
TTC
[ENA]
¡û
>W1610077048
BCZF01000024
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
44488
44562
+
Glu
TTC
[ENA]
¡û
>C131011850
CP004036
Alphaproteobacteria
Sphingomonas sp. MM-1 [CP004036]
2001591
2001665
+
Glu
TTC
[Ensembl]
¡û
>W1610535204
JRQQ01000002
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
285619
285693
+
Glu
TTC
[ENA]
¡û
>W1610648908
LJHO01000008
Alphaproteobacteria
Novosphingobium sp. AAP1 [LJHO]
92091
92017
-
Glu
TTC
[ENA]
¡û
>W1610649408
LJHZ01000099
Alphaproteobacteria
Novosphingobium sp. AAP93 [LJHZ]
8971
9045
+
Glu
TTC
[ENA]
¡û
>W1610912144
LSIA01000020
Alphaproteobacteria
Novosphingobium sp. CCH12-A3 [LSIA]
48097
48023
-
Glu
TTC
[ENA]
¡û
>W1710074231
BCYV01000004
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
88337
88263
-
Glu
TTC
[ENA]
¡û
>W1710074233
BCYV01000004
Alphaproteobacteria
Novosphingobium capsulatum NBRC 12533 [BCYV]
88085
88011
-
Glu
TTC
[ENA]
¡û
>W1710074686
BCZE01000022
Alphaproteobacteria
Novosphingobium rosa NBRC 15208 [BCZE]
103384
103458
+
Glu
TTC
[ENA]
¡û
>W1710074737
BCZF01000024
Alphaproteobacteria
Novosphingobium subterraneum NBRC 16086 [BCZF]
44488
44562
+
Glu
TTC
[ENA]
¡û
>W1710507980
FMVR01000003
Alphaproteobacteria
Novosphingobium aromaticivorans stygium [FMVR]
80936
81010
+
Glu
TTC
[ENA]
¡û
>W1710606005
FWXL01000011
Alphaproteobacteria
Novosphingobium sp. B1 [FWXL]
58832
58906
+
Glu
TTC
[ENA]
¡û
>W1710637673
JRQQ01000002
Alphaproteobacteria
Croceicoccus estronivorus MH-B5 [JRQQ]
285619
285693
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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