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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.657155 (51 seq.)
>W1711078872
LSNG01000049
Bacillota
Lactobacillus johnsonii [LSNG]
5995
5922
-
Gln
TTG
[ENA]
¡û
>W1711790996
MWIK01000039
Bacillota
Lactobacillus johnsonii [MWIK]
6129
6056
-
Gln
TTG
[ENA]
¡û
>W1712039831
NFJY01000024
Bacillota
Lactobacillus johnsonii [NFJY]
3369
3442
+
Gln
TTG
[ENA]
¡û
>C171121869
CP021703
Bacillota
Lactobacillus johnsonii UMNLJ21 [CP021703]
401687
401760
+
Gln
TTG
-
¡û
>C171121960
CP021704
Bacillota
Lactobacillus johnsonii UMNLJ22 [CP021704]
119970
119897
-
Gln
TTG
-
¡û
>C011887
AE017198
Bacillota
Lactobacillus johnsonii NCC 533 [AE017198]
1677625
1677554
-
Gln
TTG
[Ensembl]
¡û
>WENV181240009
OFFD01046635
[OFFD] mouse gut metagenome; faeces
303
376
+
Gln
TTG
[ENA]
¢þ
>WENV181241652
OFFF01003615
[OFFF] mouse gut metagenome; faeces
5847
5774
-
Gln
TTG
[ENA]
¢þ
>WENV181245991
OFFJ01005714
[OFFJ] mouse gut metagenome; faeces
5858
5785
-
Gln
TTG
[ENA]
¢þ
>WENV181247095
OFFK01005506
[OFFK] mouse gut metagenome; faeces
3903
3830
-
Gln
TTG
[ENA]
¢þ
>WENV181253211
OFFQ01002173
[OFFQ] mouse gut metagenome; faeces
4480
4553
+
Gln
TTG
[ENA]
¢þ
>WENV181255377
OFFS01002038
[OFFS] mouse gut metagenome; faeces
5858
5785
-
Gln
TTG
[ENA]
¢þ
>WENV181258725
OFFV01002042
[OFFV] mouse gut metagenome; faeces
4480
4553
+
Gln
TTG
[ENA]
¢þ
>WENV181259894
OFFW01005241
[OFFW] mouse gut metagenome; faeces
2177
2250
+
Gln
TTG
[ENA]
¢þ
>WENV181262327
OFFY01003165
[OFFY] mouse gut metagenome; faeces
4480
4553
+
Gln
TTG
[ENA]
¢þ
>WENV181263683
OFFZ01008848
[OFFZ] mouse gut metagenome; faeces
1508
1581
+
Gln
TTG
[ENA]
¢þ
>WENV181265091
OFGA01024402
[OFGA] mouse gut metagenome; faeces
772
845
+
Gln
TTG
[ENA]
¢þ
>WENV181266191
OFGB01022532
[OFGB] mouse gut metagenome; faeces
1611
1538
-
Gln
TTG
[ENA]
¢þ
>WENV181269739
OFGE01006196
[OFGE] mouse gut metagenome; faeces
5858
5785
-
Gln
TTG
[ENA]
¢þ
>WENV181271015
OFGF01004313
[OFGF] mouse gut metagenome; faeces
225
298
+
Gln
TTG
[ENA]
¢þ
>WENV181272214
OFGG01004563
[OFGG] mouse gut metagenome; faeces
225
298
+
Gln
TTG
[ENA]
¢þ
>WENV181273624
OFGH01004687
[OFGH] mouse gut metagenome; faeces
5858
5785
-
Gln
TTG
[ENA]
¢þ
>WENV181280913
OFGO01003246
[OFGO] mouse gut metagenome; faeces
2301
2374
+
Gln
TTG
[ENA]
¢þ
>WENV181282153
OFGP01002959
[OFGP] mouse gut metagenome; faeces
3268
3341
+
Gln
TTG
[ENA]
¢þ
>WENV181283493
OFGQ01004812
[OFGQ] mouse gut metagenome; faeces
225
298
+
Gln
TTG
[ENA]
¢þ
>WENV181284886
OFGR01011342
[OFGR] mouse gut metagenome; faeces
1991
2064
+
Gln
TTG
[ENA]
¢þ
>WENV181287270
OFGX01002266
[OFGX] mouse gut metagenome; faeces
4480
4553
+
Gln
TTG
[ENA]
¢þ
>WENV181289991
OFHA01005140
[OFHA] mouse gut metagenome; faeces
225
298
+
Gln
TTG
[ENA]
¢þ
>WENV181299317
OFHM01005440
[OFHM] mouse gut metagenome; faeces
225
298
+
Gln
TTG
[ENA]
¢þ
>WENV181300587
OFHN01002607
[OFHN] mouse gut metagenome; faeces
4480
4553
+
Gln
TTG
[ENA]
¢þ
>WENV181302048
OFHO01003206
[OFHO] mouse gut metagenome; faeces
3268
3341
+
Gln
TTG
[ENA]
¢þ
>WENV183562846
OOBW01001964
[OOBW] human gut metagenome; human gut
5850
5777
-
Gln
TTG
[ENA]
¢þ
>WENV183723050
PDYJ01000072
[PDYJ] gut metagenome; fecal pellets
10687
10760
+
Gln
TTG
[ENA]
¢þ
>WENV183772646
PPYF01018018
[PPYF] human gut metagenome; stool from patient with Crohn's disease
171
244
+
Gln
TTG
[ENA]
¢þ
>WENV170637776
JFBN01359707
[JFBN] chicken gut metagenome; ceca of Broiler chicken
2999
2926
-
Gln
TTG
[ENA]
¢þ
>C181181888
CP029614
Bacillota
Lactobacillus johnsonii Byun-jo-01 [CP029614]
1645654
1645727
+
Gln
TTG
-
¡û
>C191078723
CP031701
Bacillota
Lactobacillus johnsonii IDCC9203 [CP031701]
1615401
1615474
+
Gln
TTG
-
¡û
>C191093503
CP032680
Bacillota
Lactobacillus johnsonii ZLJ010 [CP032680]
1700472
1700399
-
Gln
TTG
-
¡û
>W09123075
ACGR01000052
Bacillota
Lactobacillus johnsonii ATCC 33200 [ACGR]
5892
5819
-
Gln
TTG
[ENA]
¡û
>C141008695
CP006811
Bacillota
Lactobacillus johnsonii N6.2 [CP006811]
1586620
1586547
-
Gln
TTG
[Ensembl]
¡û
>W1910918423
NIBA01000055
Bacillota
Lactobacillus johnsonii UMNLJ50 [NIBA]
1910
1983
+
Gln
TTG
[ENA]
¡û
>W1910918466
NIBB01000058
Bacillota
Lactobacillus johnsonii UMNLJ54 [NIBB]
1915
1988
+
Gln
TTG
[ENA]
¡û
>W1910918516
NIBC01000055
Bacillota
Lactobacillus johnsonii UMNLJ95 [NIBC]
6304
6231
-
Gln
TTG
[ENA]
¡û
>W1910918543
NIBD01000034
Bacillota
Lactobacillus johnsonii UMNLJ114 [NIBD]
5967
5894
-
Gln
TTG
[ENA]
¡û
>W1911569302
PCYR01000039
Bacillota
Lactobacillus sp. UMNPBX19 [PCYR]
5845
5772
-
Gln
TTG
[ENA]
¡û
>W1911570321
PCZK01000062
Bacillota
Lactobacillus johnsonii UMNLJ94 [PCZK]
1902
1975
+
Gln
TTG
[ENA]
¡û
>W1810049898
PCZJ01000074
Bacillota
Lactobacillus johnsonii UMNLJ113 [PCZJ]
270
343
+
Gln
TTG
[ENA]
¡û
>W1810116128
PHNP01000008
Bacillota
Lactobacillus johnsonii DPPM [PHNP]
5901
5828
-
Gln
TTG
[ENA]
¡û
>C10108426
FN298497
Bacillota
Lactobacillus johnsonii FI9785 [FN298497]
1487463
1487390
-
Gln
TTG
[Ensembl]
¡û
>W1610033458
AZCY01000014
Bacillota
Lactobacillus johnsonii ATCC 33200 [AZCY]
1913
1986
+
Gln
TTG
[ENA]
¡û
>W1610917782
LSNG01000049
Bacillota
Lactobacillus johnsonii [LSNG]
5995
5922
-
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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