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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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|
Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.657272 (47 seq.)
>W1710805139
LJZT01000114
Cyanobacteriota
Phormidium sp. OSCR [LJZT]
2993
2922
-
Gly
GCC
[ENA]
¡û
>W1710888861
LNAA01000027
Cyanobacteriota
Oscillatoriales cyanobacterium MTP1 [LNAA]
38837
38766
-
Gly
GCC
[ENA]
¡û
>W1711081221
LSSA01000051
Cyanobacteriota
Nostoc sp. KVJ20 [LSSA]
34815
34886
+
Gly
GCC
[ENA]
¡û
>W1711088577
LSZA01000032
Cyanobacteriota
Phormidium willei BDU 130791 [LSZA]
8584
8513
-
Gly
GCC
[ENA]
¡û
>W1711335804
MBRE01000011
Cyanobacteriota
Oscillatoriales cyanobacterium USR001 [MBRE]
12444
12515
+
Gly
GCC
[ENA]
¡û
>W1711335874
MBRF01000007
Cyanobacteriota
Limnothrix sp. P13C2 [MBRF]
515
443
-
Gly
GCC
[ENA]
¡û
>W1712017612
NETF01000135
Cyanobacteriota
unicellular cyanobacterium SU3 [NETF]
47592
47663
+
Gly
GCC
[ENA]
¡û
>W131036373
ALVN01000001
Cyanobacteriota
Leptolyngbya sp. PCC 7375 [ALVN]
2841626
2841555
-
Gly
GCC
[ENA]
¡û
>w023446
AAXW01000011
Cyanobacteriota
Crocosphaera chwakensis CCY0110 [AAXW]
103651
103725
+
Gly
GCC
[ENA]
¡û
>w002248
AAAY02000001
Cyanobacteriota
Nostoc punctiforme [AAAY]
177776
177850
+
Gly
GCC
[ENA]
¡û
>W141038168
ALVI01000054
Cyanobacteriota
Kamptonema formosum PCC 6407 [ALVI]
1810
1881
+
Gly
GCC
[ENA]
¡û
>W141038290
ALVL01000024
Cyanobacteriota
Pleurocapsa sp. PCC 7319 [ALVL]
3333685
3333756
+
Gly
GCC
[ENA]
¡û
>WENV181234468
OFEU01000185
[OFEU] microbial mat metagenome; enrichment culture HLUCC-O from microbial mat sample; contains cyanobacterium Phormidium
11484
11555
+
Gly
GCC
[ENA]
¢þ
>WENV181395553
OFSA01004246
[OFSA] freshwater metagenome; Freshwater Lake
512
441
-
Gly
GCC
[ENA]
¢þ
>W141139155
AWNH01000060
Cyanobacteriota
Leptolyngbya sp. Heron Island J [AWNH]
113966
114037
+
Gly
GCC
[ENA]
¡û
>C08003983
CP000806
Cyanobacteriota
Crocosphaera subtropica ATCC 51142 [CP000806, CP000807]
1493541
1493469
-
Gly
GCC
[Ensembl]
¡û
>C08006956
CP001037
Cyanobacteriota
Nostoc punctiforme PCC 73102 ATCC 29133; PCC 73102 [CP001037]
353822
353751
-
Gly
GCC
[Ensembl]
¡û
>WENV170023023
BCQK01105149
[BCQK] museum specimen metagenome; Liagora japonica specimen isolated from Nada, Gobou, Wakayama
19
92
+
Gly
GCC
[ENA]
¢þ
>WENV170640187
JFJP01014352
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
2047
1976
-
Gly
GCC
[ENA]
¢þ
>WENV170996271
MWWF01200152
[MWWF] soil metagenome; MGM-3 sample; Antarctic (ecotone) soil
20
91
+
Gly
GCC
[ENA]
¢þ
>WENV171003176
NNBT01002129
[NNBT] plant metagenome; symbiotic tissue sample KVJ10
1009
1080
+
Gly
GCC
[ENA]
¢þ
>C181005016
AP018281
Cyanobacteriota
Chondrocystis sp. NIES-4102 [AP018281]
2836786
2836858
+
Gly
GCC
-
¡û
>C191083070
CP031941
Cyanobacteriota
Nostoc sphaeroides Kutzing En [CP031941]
183149
183078
-
Gly
GCC
-
¡û
>W1910194184
CZCT02000076
Cyanobacteriota
Planktothrix sp. PCC 11201 [CZCT]
60307
60236
-
Gly
GCC
[ENA]
¡û
>W1910194243
CZCU01000140
Cyanobacteriota
Planktothrix serta PCC 8927 [CZCU]
40582
40653
+
Gly
GCC
[ENA]
¡û
>W1910194318
CZDF01000154
Cyanobacteriota
Planktothrix tepida PCC 9214 [CZDF]
30656
30727
+
Gly
GCC
[ENA]
¡û
>W1910339377
FSSI01000038
Cyanobacteriota
Phormidium lacuna HE10JO [FSSI]
35569
35498
-
Gly
GCC
[ENA]
¡û
>W1910339424
FSSI02000038
Cyanobacteriota
Phormidium lacuna HE10JO [FSSI]
35569
35498
-
Gly
GCC
[ENA]
¡û
>W1910617522
LIRO01000088
Cyanobacteriota
Limnothrix sp. PR1529 [LIRO]
478
406
-
Gly
GCC
[ENA]
¡û
>W1910646661
LWSY01000155
Cyanobacteriota
Nostoc sp. ATCC 53789 [LWSY]
28961
28890
-
Gly
GCC
[ENA]
¡û
>W1911118739
NOLJ01000002
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 210A [NOLJ]
53099
53028
-
Gly
GCC
[ENA]
¡û
>W1911118855
NOLK01000226
Cyanobacteriota
Nostoc sp. 'Peltigera membranacea cyanobiont' 232 [NOLK]
6762
6833
+
Gly
GCC
[ENA]
¡û
>W1911176909
NQKX01000004
Cyanobacteriota
Synechococcus sp. MW101C3 [NQKX]
42024
41953
-
Gly
GCC
[ENA]
¡û
>W1810271959
PRLH01000002
Cyanobacteriota
Cyanothece sp. BG0011 [PRLH]
54583
54654
+
Gly
GCC
[ENA]
¡û
>W1810398595
PYEQ01000294
Cyanobacteriota
filamentous cyanobacterium CCP5 [PYEQ]
5538
5467
-
Gly
GCC
[ENA]
¡û
>W10128300
CACA01000342
Cyanobacteriota
Kamptonema sp. PCC 6506 PCC 6506 [CACA]
1795
1866
+
Gly
GCC
[ENA]
¡û
>W1511343988
JRFE01000028
Cyanobacteriota
Myxosarcina sp. GI1 [JRFE]
2672
2743
+
Gly
GCC
[ENA]
¡û
>W11164252
AFJC01000027
Cyanobacteriota
Microcoleus vaginatus FGP-2 [AFJC]
7621
7550
-
Gly
GCC
[ENA]
¡û
>W11181448
AGJC01000002
Cyanobacteriota
Crocosphaera subtropica ATCC 51472 [AGJC]
394731
394659
-
Gly
GCC
[ENA]
¡û
>W11185270
CACA01000342
Cyanobacteriota
Kamptonema sp. PCC 6506 PCC 6506 [CACA]
1795
1866
+
Gly
GCC
[ENA]
¡û
>C131004237
CP003549
Cyanobacteriota
Rivularia sp. PCC 7116 [CP003549]
5510563
5510492
-
Gly
GCC
[Ensembl]
¡û
>C131004780
CP003614
Cyanobacteriota
Oscillatoria nigro-viridis PCC 7112 [CP003614]
6005789
6005718
-
Gly
GCC
[Ensembl]
¡û
>W1610668996
LJZT01000114
Cyanobacteriota
Phormidium sp. OSCR [LJZT]
2993
2922
-
Gly
GCC
[ENA]
¡û
>W1610749239
LNAA01000027
Cyanobacteriota
Oscillatoriales cyanobacterium MTP1 [LNAA]
38837
38766
-
Gly
GCC
[ENA]
¡û
>W1610923116
LSZA01000032
Cyanobacteriota
Phormidium willei BDU 130791 [LSZA]
8584
8513
-
Gly
GCC
[ENA]
¡û
>W1611066511
MBRE01000011
Cyanobacteriota
Oscillatoriales cyanobacterium USR001 [MBRE]
12444
12515
+
Gly
GCC
[ENA]
¡û
>W1611066581
MBRF01000007
Cyanobacteriota
Limnothrix sp. P13C2 [MBRF]
515
443
-
Gly
GCC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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