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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.657394 (51 seq.)
>W1710796693
LJSI01000023
Gammaproteobacteria
Neptunomonas antarctica [LJSI]
160027
160101
+
Thr
GGT
[ENA]
¡û
>W1710996780
LQBR01000009
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
13846
13920
+
Thr
GGT
[ENA]
¡û
>W1711029569
LRFG01000009
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
13846
13920
+
Thr
GGT
[ENA]
¡û
>W1711047352
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
2388375
2388301
-
Thr
GGT
[ENA]
¡û
>W1711268634
LZDE01000223
Gammaproteobacteria
Microbulbifer mangrovi [LZDE]
9388
9462
+
Thr
GGT
[ENA]
¡û
>WENV010765
AACY020291434
Marine microbial communities from Global Ocean Sampling (GOS)
623
549
-
Thr
GGT
[ENA]
>C171030145
CP014143
Gammaproteobacteria
Microbulbifer aggregans CCB-MM1 [CP014143]
1553297
1553371
+
Thr
GGT
-
¡û
>C171097775
CP019650
Gammaproteobacteria
Microbulbifer agarilyticus GP101 [CP019650]
3566722
3566648
-
Thr
GGT
-
¡û
>W131162193
AQYJ01000011
Gammaproteobacteria
Microbulbifer variabilis ATCC 700307 [AQYJ]
9244
9318
+
Thr
GGT
[ENA]
¡û
>W131222110
AUAZ01000056
Gammaproteobacteria
Marinobacterium litorale DSM 23545 [AUAZ]
874
800
-
Thr
GGT
[ENA]
¡û
>W131229296
AUGR01000027
Gammaproteobacteria
Neptunomonas japonica DSM 18939 [AUGR]
683
609
-
Thr
GGT
[ENA]
¡û
>WENV180209780
OBAL01021738
[OBAL] marine metagenome; ENVO:00002019, 'BRACKISH WATER
503
429
-
Thr
GGT
[ENA]
¢þ
>WENV180359437
OBNR01087672
[OBNR] marine metagenome; Seawater_00002010_00002149
202
276
+
Thr
GGT
[ENA]
¢þ
>WENV182540757
OJAP01004581
[OJAP] seawater metagenome; Sea water
348
422
+
Thr
GGT
[ENA]
¢þ
>WENV182555536
OJDB01003671
[OJDB] seawater metagenome; Sea water
311
385
+
Thr
GGT
[ENA]
¢þ
>WENV182556763
OJDH01000053
[OJDH] seawater metagenome; Sea water
50792
50718
-
Thr
GGT
[ENA]
¢þ
>WENV182568246
OJES01001032
[OJES] seawater metagenome; Sea water
1269
1195
-
Thr
GGT
[ENA]
¢þ
>WENV183058266
OLHP01000082
[OLHP] seawater metagenome; Sea water
6907
6981
+
Thr
GGT
[ENA]
¢þ
>WENV183058403
OLHQ01009498
[OLHQ] seawater metagenome; Sea water
281
355
+
Thr
GGT
[ENA]
¢þ
>WENV170015861
AZIJ01001928
[AZIJ] marine sediment metagenome; enrichment culture of sample MGS-ElMAX(UA) from oil contaminated site at the El-Max
205
131
-
Thr
GGT
[ENA]
¢þ
>WENV170112006
CEGC01000729
[CEGC] microbial mat metagenome; grass silage
1174
1100
-
Thr
GGT
[ENA]
¢þ
>WENV170112330
CEGE01001775
[CEGE] microbial mat metagenome; grass silage
181
107
-
Thr
GGT
[ENA]
¢þ
>W141425813
JELR01000005
Gammaproteobacteria
Microbulbifer sp. HZ11 [JELR]
271257
271331
+
Thr
GGT
[ENA]
¡û
>WENV170655535
JTFN01042464
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
264
190
-
Thr
GGT
[ENA]
¢þ
>WENV170655975
JTFN01105461
[JTFN] activated sludge metagenome; CETP activated sludge from CETP activated sludge from augmented bioreactor treating
274
200
-
Thr
GGT
[ENA]
¢þ
>WENV170656307
JTFO01009464
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
269
195
-
Thr
GGT
[ENA]
¢þ
>WENV170657397
JTFO01140437
[JTFO] activated sludge metagenome; CETP activated sludge from laboratory augmented bioreactor treating industrial wastewater
119
193
+
Thr
GGT
[ENA]
¢þ
>WENV170779300
LZQN01000246
[LZQN] oil field metagenome; sample BH-FW-7 from oil reservoir
650
724
+
Thr
GGT
[ENA]
¢þ
>C181052476
CP021435
Gammaproteobacteria
Halomonas beimenensis NTU-111 [CP021435]
3661370
3661296
-
Thr
GGT
-
¡û
>C181173111
CP029064
Gammaproteobacteria
Microbulbifer sp. A4B17 [CP029064]
588265
588339
+
Thr
GGT
-
¡û
>W141557736
JHVJ01000017
Gammaproteobacteria
Marinobacterium jannaschii DSM 6295 [JHVJ]
103551
103477
-
Thr
GGT
[ENA]
¡û
>W141712333
JMQN01000036
Gammaproteobacteria
Marinobacterium lacunae AK27 [JMQN]
381
307
-
Thr
GGT
[ENA]
¡û
>W1810270702
PREV01000026
Gammaproteobacteria
Microbulbifer pacificus LD25 [PREV]
880881
880807
-
Thr
GGT
[ENA]
¡û
>W1810591808
QFWJ01000006
Gammaproteobacteria
Marinospirillum perlucidum F3212 [QFWJ]
153416
153342
-
Thr
GGT
[ENA]
¡û
>W11170294
AFPJ01000004
Gammaproteobacteria
Microbulbifer agarilyticus S89 [AFPJ]
135037
135111
+
Thr
GGT
[ENA]
¡û
>W11170385
AFPL01000004
Gammaproteobacteria
Marinobacterium stanieri S30 [AFPL]
86839
86913
+
Thr
GGT
[ENA]
¡û
>C161078678
CP014864
Gammaproteobacteria
Microbulbifer thermotolerans DAU221 [CP014864]
574948
575022
+
Thr
GGT
[Ensembl]
¡û
>W1610660650
LJSI01000023
Gammaproteobacteria
Neptunomonas antarctica [LJSI]
160027
160101
+
Thr
GGT
[ENA]
¡û
>W1610851437
LQBR01000009
Gammaproteobacteria
Microbulbifer sp. ZGT114 [LQBR]
13846
13920
+
Thr
GGT
[ENA]
¡û
>W1610877837
LRFG01000009
Gammaproteobacteria
Microbulbifer flavimaris WRN-8 [LRFG]
13846
13920
+
Thr
GGT
[ENA]
¡û
>W1610888481
LROY01000002
Gammaproteobacteria
Microbulbifer sp. Q7 [LROY]
2388375
2388301
-
Thr
GGT
[ENA]
¡û
>W1710520100
FNFH01000011
Gammaproteobacteria
Microbulbifer yueqingensis [FNFH]
618
544
-
Thr
GGT
[ENA]
¡û
>W1710532753
FNQO01000009
Gammaproteobacteria
Microbulbifer marinus [FNQO]
11138
11212
+
Thr
GGT
[ENA]
¡û
>W1710533761
FNRJ01000007
Gammaproteobacteria
Marinobacterium iners DSM 11526 [FNRJ]
93601
93675
+
Thr
GGT
[ENA]
¡û
>W1710539751
FNVQ01000004
Gammaproteobacteria
Marinobacterium lutimaris [FNVQ]
303874
303800
-
Thr
GGT
[ENA]
¡û
>W1710557220
FOKT01000010
Gammaproteobacteria
Microbulbifer thermotolerans [FOKT]
10489
10563
+
Thr
GGT
[ENA]
¡û
>W1710557796
FOLH01000007
Gammaproteobacteria
Marinospirillum celere [FOLH]
2472
2546
+
Thr
GGT
[ENA]
¡û
>W1710562232
FOOU01000018
Gammaproteobacteria
Neptunomonas qingdaonensis [FOOU]
63394
63468
+
Thr
GGT
[ENA]
¡û
>W1710583734
FQVA01000008
Gammaproteobacteria
Microbulbifer donghaiensis [FQVA]
10782
10856
+
Thr
GGT
[ENA]
¡û
>W1710596406
FTMN01000009
Gammaproteobacteria
Marinobacterium stanieri [FTMN]
131760
131686
-
Thr
GGT
[ENA]
¡û
>W1710598732
FTOE01000006
Gammaproteobacteria
Neptunomonas antarctica [FTOE]
91755
91681
-
Thr
GGT
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK