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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.657856 (74 seq.)
>W131109068
APHJ01000040
Bacteroidota
Gillisia sp. CAL575 [APHJ]
16474
16400
-
Glu
TTC
[ENA]
¡û
>W131109069
APHJ01000040
Bacteroidota
Gillisia sp. CAL575 [APHJ]
16323
16251
-
Glu
TTC
[ENA]
¡û
>W131233831
AUKH01000005
Bacteroidota
Gillisia sp. JM1 [AUKH]
836501
836427
-
Glu
TTC
[ENA]
¡û
>W131233832
AUKH01000005
Bacteroidota
Gillisia sp. JM1 [AUKH]
836350
836278
-
Glu
TTC
[ENA]
¡û
>C171063280
CP017478
Bacteroidota
Urechidicola croceus LPB0138 [CP017478]
3080042
3080116
+
Glu
TTC
-
¡û
>w012574
AAMP01000001
Bacteroidota
Croceibacter atlanticus HTCC2559 [AAMP]
257717
257646
-
Glu
TTC
[ENA]
¡û
>w012573
AAMP01000001
Bacteroidota
Croceibacter atlanticus HTCC2559 [AAMP]
257850
257774
-
Glu
TTC
[ENA]
¡û
>WENV180104758
OAPC01095061
[OAPC] marine metagenome; na
265
193
-
Glu
TTC
[ENA]
¢þ
>WENV180109081
OAPJ01004831
[OAPJ] marine metagenome; ENVO 00002150
307
379
+
Glu
TTC
[ENA]
¢þ
>WENV180374985
OBOK01058724
[OBOK] marine metagenome; seawater
470
398
-
Glu
TTC
[ENA]
¢þ
>WENV180383098
OBOU01000709
[OBOU] marine metagenome; ENV:00002010
346
274
-
Glu
TTC
[ENA]
¢þ
>WENV180383729
OBOV01012473
[OBOV] marine metagenome; ENV:00002010
526
598
+
Glu
TTC
[ENA]
¢þ
>WENV180590472
OCOT01030105
[OCOT] marine metagenome; ENVO:00002010
291
363
+
Glu
TTC
[ENA]
¢þ
>WENV180638755
OCRI01015094
[OCRI] marine metagenome; Sterile flask
864
936
+
Glu
TTC
[ENA]
¢þ
>WENV181306729
OFIM01002963
[OFIM] marine metagenome; seawater
562
490
-
Glu
TTC
[ENA]
¢þ
>WENV181325278
OFLI01027863
[OFLI] seawater metagenome; seawater
320
392
+
Glu
TTC
[ENA]
¢þ
>WENV181325604
OFLJ01008293
[OFLJ] seawater metagenome; seawater
1109
1181
+
Glu
TTC
[ENA]
¢þ
>WENV182541015
OJAQ01002886
[OJAQ] seawater metagenome; Sea water
377
305
-
Glu
TTC
[ENA]
¢þ
>WENV182547295
OJBS01000145
[OJBS] seawater metagenome; Sea water
4008
3936
-
Glu
TTC
[ENA]
¢þ
>WENV182556501
OJDG01012679
[OJDG] seawater metagenome; Sea water
334
262
-
Glu
TTC
[ENA]
¢þ
>WENV182559831
OJDQ01007118
[OJDQ] seawater metagenome; Sea water
170
98
-
Glu
TTC
[ENA]
¢þ
>WENV182560635
OJDU01013359
[OJDU] seawater metagenome; Sea water
110
38
-
Glu
TTC
[ENA]
¢þ
>WENV182564442
OJEF01000192
[OJEF] seawater metagenome; Sea water
115
187
+
Glu
TTC
[ENA]
¢þ
>WENV182564729
OJEF01004356
[OJEF] seawater metagenome; Sea water
3681
3753
+
Glu
TTC
[ENA]
¢þ
>WENV182565184
OJEH01000182
[OJEH] seawater metagenome; Sea water
18179
18107
-
Glu
TTC
[ENA]
¢þ
>WENV182568038
OJEP01018592
[OJEP] seawater metagenome; Sea water
609
537
-
Glu
TTC
[ENA]
¢þ
>WENV182572317
OJFL01003140
[OJFL] seawater metagenome; Sea water
2804
2876
+
Glu
TTC
[ENA]
¢þ
>WENV182573359
OJFP01000985
[OJFP] seawater metagenome; Sea water
4281
4353
+
Glu
TTC
[ENA]
¢þ
>WENV182576363
OJFX01014610
[OJFX] seawater metagenome; Sea water
215
287
+
Glu
TTC
[ENA]
¢þ
>WENV182579172
OJGS01001497
[OJGS] seawater metagenome; Sea water
2565
2493
-
Glu
TTC
[ENA]
¢þ
>WENV182580169
OJGU01008394
[OJGU] seawater metagenome; Sea water
184
256
+
Glu
TTC
[ENA]
¢þ
>WENV182580459
OJGW01001165
[OJGW] seawater metagenome; Sea water
4034
3962
-
Glu
TTC
[ENA]
¢þ
>WENV182582669
OJHB01010048
[OJHB] seawater metagenome; Sea water
676
748
+
Glu
TTC
[ENA]
¢þ
>WENV182583793
OJHE01010065
[OJHE] seawater metagenome; Sea water
478
406
-
Glu
TTC
[ENA]
¢þ
>WENV182584596
OJHG01002443
[OJHG] seawater metagenome; Sea water
1772
1700
-
Glu
TTC
[ENA]
¢þ
>WENV182585145
OJHH01002076
[OJHH] seawater metagenome; Sea water
3437
3365
-
Glu
TTC
[ENA]
¢þ
>WENV182586091
OJHJ01001023
[OJHJ] seawater metagenome; Sea water
4309
4381
+
Glu
TTC
[ENA]
¢þ
>WENV182586708
OJHK01003401
[OJHK] seawater metagenome; Sea water
2534
2606
+
Glu
TTC
[ENA]
¢þ
>WENV182591724
OJIO01002912
[OJIO] seawater metagenome; Sea water
2644
2572
-
Glu
TTC
[ENA]
¢þ
>WENV182594307
OJIV01003624
[OJIV] seawater metagenome; Sea water
729
657
-
Glu
TTC
[ENA]
¢þ
>WENV183060903
OLHY01012575
[OLHY] seawater metagenome; Sea water
330
402
+
Glu
TTC
[ENA]
¢þ
>WENV183617929
OOFK01003825
[OOFK] marine metagenome; seawater
132
60
-
Glu
TTC
[ENA]
¢þ
>WENV183619462
OOFQ01008342
[OOFQ] marine metagenome; seawater
1109
1181
+
Glu
TTC
[ENA]
¢þ
>WENV183620105
OOFR01006113
[OOFR] marine metagenome; seawater
460
388
-
Glu
TTC
[ENA]
¢þ
>WENV170304611
CESI01061295
[CESI] marine metagenome genome assembly TARA_082_DCM_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
127
199
+
Glu
TTC
[ENA]
¢þ
>WENV170369639
CETR01022060
[CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
845
771
-
Glu
TTC
[ENA]
¢þ
>WENV170369640
CETR01022060
[CETR] marine metagenome genome assembly TARA_112_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
711
637
-
Glu
TTC
[ENA]
¢þ
>WENV170537545
CEWR01013008
[CEWR] marine metagenome genome assembly TARA_085_MES_0.22-3 ,contig; saline water (ENVO:00002010), including plankton (ENVO:xxxxxxxx)
14593
14667
+
Glu
TTC
[ENA]
¢þ
>WENV170569034
FLMP01111673
[FLMP] seawater metagenome; seawater
282
208
-
Glu
TTC
[ENA]
¢þ
>WENV170572142
FLOH01000558
[FLOH] marine metagenome; water
16085
16159
+
Glu
TTC
[ENA]
¢þ
>WENV170606112
FUWD010610455
[FUWD] metagenome; unknown
178
104
-
Glu
TTC
[ENA]
¢þ
>WENV170623150
FUWD013138576
[FUWD] metagenome; unknown
496
570
+
Glu
TTC
[ENA]
¢þ
>WENV170631408
FUWD013350871
[FUWD] metagenome; unknown
496
570
+
Glu
TTC
[ENA]
¢þ
>WENV170783562
MAAC01017874
[MAAC] seawater metagenome; sample BD02T64 sea water enriched with oil for 64 days
30962
30888
-
Glu
TTC
[ENA]
¢þ
>WENV170824458
MDSY01076390
[MDSY] marine metagenome; seawater
1588
1514
-
Glu
TTC
[ENA]
¢þ
>WENV170824459
MDSY01076390
[MDSY] marine metagenome; seawater
1222
1150
-
Glu
TTC
[ENA]
¢þ
>WENV170919171
MDTF01006626
[MDTF] marine metagenome; seawater
4446
4520
+
Glu
TTC
[ENA]
¢þ
>W141818605
JQLP01000005
Bacteroidota
Gillisia sp. Hel_I_29 [JQLP]
661870
661944
+
Glu
TTC
[ENA]
¡û
>W141818606
JQLP01000005
Bacteroidota
Gillisia sp. Hel_I_29 [JQLP]
662021
662095
+
Glu
TTC
[ENA]
¡û
>W1910547430
FZNT01000003
Bacteroidota
Lutibacter agarilyticus DSM 29150 [FZNT]
466766
466694
-
Glu
TTC
[ENA]
¡û
>W1810570251
QEIH01000001
Bacteroidota
Lutibacter citreus 1KV19 [QEIH]
616909
616981
+
Glu
TTC
[ENA]
¡û
>W1810570252
QEIH01000001
Bacteroidota
Lutibacter citreus 1KV19 [QEIH]
617046
617118
+
Glu
TTC
[ENA]
¡û
>W1810684816
QKYV01000007
Bacteroidota
Mesonia algae DSM 15361 [QKYV]
57196
57268
+
Glu
TTC
[ENA]
¡û
>W1810684817
QKYV01000007
Bacteroidota
Mesonia algae DSM 15361 [QKYV]
57311
57383
+
Glu
TTC
[ENA]
¡û
>C10102669
CP002046
Bacteroidota
Croceibacter atlanticus HTCC2559 [CP002046]
257155
257081
-
Glu
TTC
[Ensembl]
¡û
>C10102670
CP002046
Bacteroidota
Croceibacter atlanticus HTCC2559 [CP002046]
257023
256949
-
Glu
TTC
[Ensembl]
¡û
>WENV055391
AACY023225351
Marine microbial communities from Global Ocean Sampling (GOS)
917
991
+
Glu
TTC
[ENA]
>C161068671
CP014224
Bacteroidota
Wenyingzhuangia fucanilytica CZ1127 [CP014224]
222321
222395
+
Glu
TTC
[Ensembl]
¡û
>C161068672
CP014224
Bacteroidota
Wenyingzhuangia fucanilytica CZ1127 [CP014224]
222690
222764
+
Glu
TTC
[Ensembl]
¡û
>W121063874
AJLT01000018
Bacteroidota
Gillisia marina CBA3202 [AJLT]
43153
43227
+
Glu
TTC
[ENA]
¡û
>W121063875
AJLT01000018
Bacteroidota
Gillisia marina CBA3202 [AJLT]
43304
43376
+
Glu
TTC
[ENA]
¡û
>WENV080393
ABCO01000017
Unidentified eubacterium SCB49
3233
3157
-
Glu
TTC
[ENA]
>W1710587027
FQXQ01000009
Bacteroidota
Wenyingzhuangia marina [FQXQ]
31422
31348
-
Glu
TTC
[ENA]
¡û
>W1710587028
FQXQ01000009
Bacteroidota
Wenyingzhuangia marina [FQXQ]
31052
30978
-
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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