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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
Top
|
Keyword
|
BLAST
|
Download
|
HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658273 (55 seq.)
>W1711174320
LWED01000020
Gammaproteobacteria
Shewanella baltica [LWED]
59314
59388
+
Gln
TTG
[ENA]
¡û
>W1711621606
MPDG02000002
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
719315
719389
+
Gln
TTG
[ENA]
¡û
>W1711621607
MPDG02000002
Gammaproteobacteria
Shewanella sp. SACH [MPDG]
719414
719488
+
Gln
TTG
[ENA]
¡û
>C020672
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3818182
3818108
-
Gln
TTG
[Ensembl]
¡û
>C020673
CP000563
Gammaproteobacteria
Shewanella baltica OS155 [CP000563]
3818083
3818009
-
Gln
TTG
[Ensembl]
¡û
>w026315
ABAU01000061
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
17532
17608
+
Gln
TTG
[ENA]
¡û
>w026314
ABAU01000061
Gammaproteobacteria
Shewanella baltica OS223 [ABAU]
17433
17509
+
Gln
TTG
[ENA]
¡û
>w024925
AAZC01000072
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
659
735
+
Gln
TTG
[ENA]
¡û
>w024924
AAZC01000072
Gammaproteobacteria
Shewanella baltica OS185 [AAZC]
560
636
+
Gln
TTG
[ENA]
¡û
>w018658
AATK01000076
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
13312
13236
-
Gln
TTG
[ENA]
¡û
>w018657
AATK01000076
Gammaproteobacteria
Shewanella baltica OS195 [AATK]
13411
13335
-
Gln
TTG
[ENA]
¡û
>C08008657
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3930940
3930869
-
Gln
TTG
[Ensembl]
¡û
>C08008658
CP000753
Gammaproteobacteria
Shewanella baltica OS185 [CP000753]
3930841
3930770
-
Gln
TTG
[Ensembl]
¡û
>C08008761
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
4053872
4053801
-
Gln
TTG
[Ensembl]
¡û
>C08008762
CP000891
Gammaproteobacteria
Shewanella baltica OS195 [CP000891]
4053773
4053702
-
Gln
TTG
[Ensembl]
¡û
>W141277727
JAEU01000019
Gammaproteobacteria
Shewanella putrefaciens HRCR-6 [JAEU]
55625
55551
-
Gln
TTG
[ENA]
¡û
>ENV08001631
ABNJ01142409
mosquito metagenome; viral fraction from mixed species mosquitoes collected at Buena Vista Lagoon in Oceanside, CA
92
18
-
Gln
TTG
[ENA]
¡û
>C181016845
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
4421147
4421073
-
Gln
TTG
-
¡û
>C181016846
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
4421049
4420975
-
Gln
TTG
-
¡û
>C181016849
CP015194
Gammaproteobacteria
Shewanella sp. Pdp11 [CP015194]
4420695
4420621
-
Gln
TTG
-
¡û
>C181075006
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3108984
3109058
+
Gln
TTG
-
¡û
>C181075007
CP023019
Gammaproteobacteria
Shewanella sp. WE21 [CP023019]
3109083
3109157
+
Gln
TTG
-
¡û
>C181164491
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
3033272
3033346
+
Gln
TTG
-
¡û
>C181164492
CP028355
Gammaproteobacteria
Shewanella baltica CW2 [CP028355]
3033371
3033445
+
Gln
TTG
-
¡û
>C181167923
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
3648686
3648612
-
Gln
TTG
-
¡û
>C181167924
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
3648587
3648513
-
Gln
TTG
-
¡û
>C181167927
CP028730
Gammaproteobacteria
Shewanella baltica 128 [CP028730]
3648233
3648159
-
Gln
TTG
-
¡û
>C191206466
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3752548
3752474
-
Gln
TTG
-
¡û
>C191206467
LR134321
Gammaproteobacteria
Shewanella baltica NCTC10737 [LR134321]
3752449
3752375
-
Gln
TTG
-
¡û
>W09102911
AAIO01000137
Gammaproteobacteria
Shewanella baltica OS155 [AAIO]
102
176
+
Gln
TTG
[ENA]
¡û
>C09109143
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1306953
1307027
+
Gln
TTG
[Ensembl]
¡û
>C09109144
CP001252
Gammaproteobacteria
Shewanella baltica OS223 [CP001252]
1307052
1307126
+
Gln
TTG
[Ensembl]
¡û
>W1810721531
QNSC01000003
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
48621
48695
+
Gln
TTG
[ENA]
¡û
>W1810721532
QNSC01000003
Gammaproteobacteria
Shewanella putrefaciens 97 [QNSC]
48719
48793
+
Gln
TTG
[ENA]
¡û
>W10119025
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
303815
303741
-
Gln
TTG
[ENA]
¡û
>W10119026
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
303716
303642
-
Gln
TTG
[ENA]
¡û
>W10126050
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508403
508329
-
Gln
TTG
[ENA]
¡û
>W10126051
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508305
508231
-
Gln
TTG
[ENA]
¡û
>W10126354
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
303335
303409
+
Gln
TTG
[ENA]
¡û
>W10126355
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
303433
303507
+
Gln
TTG
[ENA]
¡û
>C11119376
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1319414
1319488
+
Gln
TTG
[Ensembl]
¡û
>C11119377
CP002767
Gammaproteobacteria
Shewanella baltica BA175 [CP002767]
1319512
1319586
+
Gln
TTG
[Ensembl]
¡û
>C11119518
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3912614
3912540
-
Gln
TTG
[Ensembl]
¡û
>C11119519
CP002811
Gammaproteobacteria
Shewanella baltica OS117 [CP002811]
3912515
3912441
-
Gln
TTG
[Ensembl]
¡û
>C11119616
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
4001836
4001762
-
Gln
TTG
[Ensembl]
¡û
>C11119617
CP002383
Gammaproteobacteria
Shewanella baltica OS678 [CP002383]
4001737
4001663
-
Gln
TTG
[Ensembl]
¡û
>W11125197
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
303815
303741
-
Gln
TTG
[ENA]
¡û
>W11125198
ADVH01000001
Gammaproteobacteria
Shewanella baltica OS678 [ADVH]
303716
303642
-
Gln
TTG
[ENA]
¡û
>W11133311
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508403
508329
-
Gln
TTG
[ENA]
¡û
>W11133312
AECY01000003
Gammaproteobacteria
Shewanella baltica OS183 [AECY]
508305
508231
-
Gln
TTG
[ENA]
¡û
>W11133615
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
303335
303409
+
Gln
TTG
[ENA]
¡û
>W11133616
AEDE01000001
Gammaproteobacteria
Shewanella baltica BA175 [AEDE]
303433
303507
+
Gln
TTG
[ENA]
¡û
>W11178470
AGEX01000010
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
164823
164749
-
Gln
TTG
[ENA]
¡û
>W11178471
AGEX01000010
Gammaproteobacteria
Shewanella baltica OS625 [AGEX]
164724
164650
-
Gln
TTG
[ENA]
¡û
>W1610982633
LWED01000020
Gammaproteobacteria
Shewanella baltica [LWED]
59314
59388
+
Gln
TTG
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
BACK