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tRNADB-CE
: tRNA gene database curated manually by experts
Takashi Abe
1
, Toshimichi Ikemura
2
, Junichi Sugahara
3
, Akio Kanai
3
, Yasuo Ohara
2
, Hiroshi Uehara
2
, Makoto Kinouchi
4
,
Shigehiko Kanaya
5
, Yuko Yamada
2
, Akira Muto
6
, Hachiro Inokuchi
2
1
. Niigata Univ.,
2
. Nagahama Inst. of Bio-Sci. and Tech.,
3
. Keio Univ.,
4
. Yamagata Univ.,
5
. NAIST,
6
. Hirosaki Univ.
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Keyword
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BLAST
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HOW TO USE
tRNA genes clustered and arranged according to each identical group
HIT:
1 Group(s).
Download Sequence
Representative sequence of each cluster
View ClustalW result
Sort by Identical group No.
Sort by the number of tRNAs in the Identical group
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Identical group No.658281 (115 seq.)
>W1711167553
LVWJ02000019
Bacteroidota
Lewinella sp. 4G2 [LVWJ]
273662
273736
+
Glu
TTC
[ENA]
¡û
>W1711167554
LVWJ02000019
Bacteroidota
Lewinella sp. 4G2 [LVWJ]
273915
273989
+
Glu
TTC
[ENA]
¡û
>W1711284824
LZRN01000053
Bacteroidota
Gelidibacter algens [LZRN]
596
522
-
Glu
TTC
[ENA]
¡û
>W1711413571
MGWI01000024
Bacteroidota
Flavobacteria bacterium GWF1_32_7 [MGWI]
8425
8499
+
Glu
TTC
[ENA]
¡û
>W1711413572
MGWI01000024
Bacteroidota
Flavobacteria bacterium GWF1_32_7 [MGWI]
8528
8600
+
Glu
TTC
[ENA]
¡û
>W131167410
ARDG01000010
Bacteroidota
Neolewinella persica DSM 23188 [ARDG]
31735
31807
+
Glu
TTC
[ENA]
¡û
>W131167411
ARDG01000010
Bacteroidota
Neolewinella persica DSM 23188 [ARDG]
31910
31984
+
Glu
TTC
[ENA]
¡û
>W131167412
ARDG01000010
Bacteroidota
Neolewinella persica DSM 23188 [ARDG]
32150
32224
+
Glu
TTC
[ENA]
¡û
>W131224653
AUCZ01000001
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
111589
111517
-
Glu
TTC
[ENA]
¡û
>W131224654
AUCZ01000001
Bacteroidota
Flavobacterium suncheonense DSM 17707 [AUCZ]
111489
111415
-
Glu
TTC
[ENA]
¡û
>W131229884
AUHD01000005
Bacteroidota
Gelidibacter mesophilus DSM 14095 [AUHD]
3267
3341
+
Glu
TTC
[ENA]
¡û
>w023491
AAXX01000001
Bacteroidota
Flavobacteria bacterium BAL38 [AAXX]
404222
404146
-
Glu
TTC
[ENA]
¡û
>w023490
AAXX01000001
Bacteroidota
Flavobacteria bacterium BAL38 [AAXX]
404325
404249
-
Glu
TTC
[ENA]
¡û
>WENV180101873
OAOW01038724
[OAOW] marine metagenome; ENVO.00002110
274
202
-
Glu
TTC
[ENA]
¢þ
>WENV180114130
OAPR01170486
[OAPR] marine metagenome; seawater
50
122
+
Glu
TTC
[ENA]
¢þ
>WENV180114563
OAPS01019736
[OAPS] marine metagenome; sea water
649
577
-
Glu
TTC
[ENA]
¢þ
>WENV180285144
OBID01247756
[OBID] metagenome; sludge
146
218
+
Glu
TTC
[ENA]
¢þ
>WENV180384006
OBOV01137556
[OBOV] marine metagenome; ENV:00002010
74
2
-
Glu
TTC
[ENA]
¢þ
>WENV180394496
OBPS01010358
[OBPS] marine metagenome; ENVO:00002010 seawater
387
315
-
Glu
TTC
[ENA]
¢þ
>W141093427
AVBI01000012
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
122924
122850
-
Glu
TTC
[ENA]
¡û
>W141093428
AVBI01000012
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
122834
122760
-
Glu
TTC
[ENA]
¡û
>W141093429
AVBI01000012
Bacteroidota
Flavobacterium cauense R2A-7 [AVBI]
122729
122655
-
Glu
TTC
[ENA]
¡û
>W141094600
AVCS01000015
Bacteroidota
Flavobacterium enshiense DK69 [AVCS]
315671
315745
+
Glu
TTC
[ENA]
¡û
>W141094601
AVCS01000015
Bacteroidota
Flavobacterium enshiense DK69 [AVCS]
315768
315842
+
Glu
TTC
[ENA]
¡û
>W141094602
AVCS01000015
Bacteroidota
Flavobacterium enshiense DK69 [AVCS]
315881
315955
+
Glu
TTC
[ENA]
¡û
>W141096684
AVFO01000040
Bacteroidota
Flavobacterium saliperosum S13 [AVFO]
65926
65852
-
Glu
TTC
[ENA]
¡û
>W141096685
AVFO01000040
Bacteroidota
Flavobacterium saliperosum S13 [AVFO]
65834
65762
-
Glu
TTC
[ENA]
¡û
>W141096686
AVFO01000040
Bacteroidota
Flavobacterium saliperosum S13 [AVFO]
65722
65648
-
Glu
TTC
[ENA]
¡û
>W141097139
AVGG01000019
Bacteroidota
Flavobacterium limnosediminis JC2902 [AVGG]
75936
75862
-
Glu
TTC
[ENA]
¡û
>W141097140
AVGG01000019
Bacteroidota
Flavobacterium limnosediminis JC2902 [AVGG]
75838
75766
-
Glu
TTC
[ENA]
¡û
>W141097141
AVGG01000019
Bacteroidota
Flavobacterium limnosediminis JC2902 [AVGG]
75734
75662
-
Glu
TTC
[ENA]
¡û
>WENV181836034
OGVJ01000159
[OGVJ] freshwater metagenome; freshwater
3548
3476
-
Glu
TTC
[ENA]
¢þ
>WENV181837504
OGVK01060252
[OGVK] freshwater metagenome; freshwater
348
420
+
Glu
TTC
[ENA]
¢þ
>WENV181856544
OGWN01003379
[OGWN] freshwater metagenome; freshwater
1601
1529
-
Glu
TTC
[ENA]
¢þ
>WENV181856545
OGWN01003379
[OGWN] freshwater metagenome; freshwater
1504
1432
-
Glu
TTC
[ENA]
¢þ
>WENV182563957
OJED01005771
[OJED] seawater metagenome; Sea water
76
148
+
Glu
TTC
[ENA]
¢þ
>WENV183615063
OOEA01046794
[OOEA] marine metagenome; sea ice
350
278
-
Glu
TTC
[ENA]
¢þ
>WENV183615851
OOEB01188244
[OOEB] marine metagenome; sea ice
77
5
-
Glu
TTC
[ENA]
¢þ
>WENV183616237
OOEC01194984
[OOEC] marine metagenome; sea ice
290
218
-
Glu
TTC
[ENA]
¢þ
>WENV183617874
OOEG01177891
[OOEG] marine metagenome; sea ice
163
235
+
Glu
TTC
[ENA]
¢þ
>WENV183623612
OOGA01019203
[OOGA] marine metagenome; sea ice
482
554
+
Glu
TTC
[ENA]
¢þ
>WENV183623613
OOGA01019203
[OOGA] marine metagenome; sea ice
664
736
+
Glu
TTC
[ENA]
¢þ
>WENV183630869
OOGU01005876
[OOGU] marine metagenome; sea ice
1944
2016
+
Glu
TTC
[ENA]
¢þ
>WENV183725801
PJQF01018279
[PJQF] biofilm metagenome; biomolecule (vanillin) treated reverse osmosis membrane biofilm
629
701
+
Glu
TTC
[ENA]
¢þ
>WENV170643096
JFJP01049921
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4054
4128
+
Glu
TTC
[ENA]
¢þ
>WENV170643097
JFJP01049921
[JFJP] microbial mat metagenome; purple microbial (photo- and chemosynthetic) mats found in low-oxygen high-sulfur sink
4166
4240
+
Glu
TTC
[ENA]
¢þ
>WENV170654485
JRYL01000049
[JRYL] activated sludge metagenome; activated biomass of a wastewater treatment plant treating wastewater from different
219009
218937
-
Glu
TTC
[ENA]
¢þ
>WENV170979360
MTKZ01086501
[MTKZ] anaerobic digester metagenome; anaerobic digester fed with sludge from wastewater treatment plant
1004
1078
+
Glu
TTC
[ENA]
¢þ
>WENV170991184
MWWA01131260
[MWWA] soil metagenome; MS5-1 sample; Antarctic (ecotone) soil
231
303
+
Glu
TTC
[ENA]
¢þ
>C181178742
CP029463
Bacteroidota
Flavobacterium sediminis MEBiC07310 [CP029463]
2542671
2542743
+
Glu
TTC
-
¡û
>C191161893
CP038810
Bacteroidota
Flavobacterium sangjuense GS03 [CP038810]
1710040
1710112
+
Glu
TTC
-
¡û
>W141563381
JHZY01000004
Bacteroidota
Leeuwenhoekiella sp. MAR_2009_132 Hel_I_48 [JHZY]
418826
418752
-
Glu
TTC
[ENA]
¡û
>W141702885
JMLU01000002
Bacteroidota
Flavobacterium sasangense DSM 21067 [JMLU]
151906
151980
+
Glu
TTC
[ENA]
¡û
>W141702886
JMLU01000002
Bacteroidota
Flavobacterium sasangense DSM 21067 [JMLU]
152008
152082
+
Glu
TTC
[ENA]
¡û
>W141807484
JPOL01000002
Bacteroidota
Flavimarina sp. Hel_I_48 MAR_2009_132 [JPOL]
1132719
1132645
-
Glu
TTC
[ENA]
¡û
>C141012340
HE774682
Bacteroidota
Flavobacterium indicum GPTSA100-9 = DSM 17447 [HE774682]
2055679
2055607
-
Glu
TTC
-
¡û
>C141012341
HE774682
Bacteroidota
Flavobacterium indicum GPTSA100-9 = DSM 17447 [HE774682]
2055574
2055500
-
Glu
TTC
-
¡û
>W1910808949
MUGT01000090
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
8642
8568
-
Glu
TTC
[ENA]
¡û
>W1910808950
MUGT01000090
Bacteroidota
Flavobacterium branchiophilum ATCC 35035 [MUGT]
8535
8463
-
Glu
TTC
[ENA]
¡û
>W1910923786
NIHE01000006
Bacteroidota
Confluentibacter lentus HJM-3 [NIHE]
44368
44440
+
Glu
TTC
[ENA]
¡û
>W1910935659
NIXN01000007
Bacteroidota
Confluentibacter citreus XJNY [NIXN]
55507
55579
+
Glu
TTC
[ENA]
¡û
>W1911587283
PJQW01000004
Bacteroidota
Flavobacterium sp. J27 [PJQW]
136863
136935
+
Glu
TTC
[ENA]
¡û
>W1911696645
QMEM01000002
Bacteroidota
Lewinella sp. IMCC34183 [QMEM]
224896
224970
+
Glu
TTC
[ENA]
¡û
>W1911698465
QNQZ01000004
Bacteroidota
Lewinella sp. IMCC34191 [QNQZ]
374901
374973
+
Glu
TTC
[ENA]
¡û
>W1911698466
QNQZ01000004
Bacteroidota
Lewinella sp. IMCC34191 [QNQZ]
375074
375146
+
Glu
TTC
[ENA]
¡û
>W1911708464
QOVM01000003
Bacteroidota
Leeuwenhoekiella aequorea LMG 22550 [QOVM]
245117
245045
-
Glu
TTC
[ENA]
¡û
>W1810059818
PDLO01000005
Bacteroidota
Neolewinella marina MKG-38 [PDLO]
64186
64258
+
Glu
TTC
[ENA]
¡û
>W1810161365
PJEO01000015
Bacteroidota
Confluentibacter flavum 3B [PJEO]
58464
58536
+
Glu
TTC
[ENA]
¡û
>W1810296212
PTJC01000006
Bacteroidota
Neolewinella xylanilytica DSM 29526 [PTJC]
370398
370326
-
Glu
TTC
[ENA]
¡û
>W1810693852
QLLQ01000014
Bacteroidota
Gelidibacter algens DSM 12408 [QLLQ]
18737
18665
-
Glu
TTC
[ENA]
¡û
>W1810694869
QLMI01000004
Bacteroidota
Flavobacterium aquaticum CGMCC 1.12398 [QLMI]
113377
113305
-
Glu
TTC
[ENA]
¡û
>W1810694870
QLMI01000004
Bacteroidota
Flavobacterium aquaticum CGMCC 1.12398 [QLMI]
113275
113203
-
Glu
TTC
[ENA]
¡û
>W1810695782
QLST01000005
Bacteroidota
Flavobacterium tibetense YH5 [QLST]
130663
130735
+
Glu
TTC
[ENA]
¡û
>W1810695783
QLST01000005
Bacteroidota
Flavobacterium tibetense YH5 [QLST]
130768
130840
+
Glu
TTC
[ENA]
¡û
>W1810696104
QLSZ01000009
Bacteroidota
Flavobacterium aciduliphilum DSM 25663 [QLSZ]
91853
91781
-
Glu
TTC
[ENA]
¡û
>W1810696105
QLSZ01000009
Bacteroidota
Flavobacterium aciduliphilum DSM 25663 [QLSZ]
91744
91672
-
Glu
TTC
[ENA]
¡û
>W1511526860
JYGZ01000007
Bacteroidota
Flavobacterium sp. 316 [JYGZ]
105801
105875
+
Glu
TTC
[ENA]
¡û
>C121017022
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
2477705
2477631
-
Glu
TTC
[Ensembl]
¡û
>C121017023
FQ859183
Bacteroidota
Flavobacterium branchiophilum FL-15 [FQ859183]
2477599
2477525
-
Glu
TTC
[Ensembl]
¡û
>WENV062130
AACY023448813
Marine microbial communities from Global Ocean Sampling (GOS)
123
47
-
Glu
TTC
[ENA]
>WENV062131
AACY023448813
Marine microbial communities from Global Ocean Sampling (GOS)
216
140
-
Glu
TTC
[ENA]
>W1610534978
JRLU01000003
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
361519
361593
+
Glu
TTC
[ENA]
¡û
>W1610534979
JRLU01000003
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
361609
361683
+
Glu
TTC
[ENA]
¡û
>W1610534980
JRLU01000003
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
361714
361788
+
Glu
TTC
[ENA]
¡û
>W1610535044
JRLW01000003
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
113178
113104
-
Glu
TTC
[ENA]
¡û
>W1610535045
JRLW01000003
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
113079
113007
-
Glu
TTC
[ENA]
¡û
>W1610535046
JRLW01000003
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
112979
112905
-
Glu
TTC
[ENA]
¡û
>W1610535156
JRLZ01000001
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
407355
407429
+
Glu
TTC
[ENA]
¡û
>W1610535157
JRLZ01000001
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
407452
407526
+
Glu
TTC
[ENA]
¡û
>W1610535158
JRLZ01000001
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
407565
407639
+
Glu
TTC
[ENA]
¡û
>W1610535159
JRLZ01000001
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
407678
407752
+
Glu
TTC
[ENA]
¡û
>W1610977710
LVWJ02000019
Bacteroidota
Lewinella sp. 4G2 [LVWJ]
273662
273736
+
Glu
TTC
[ENA]
¡û
>W1610977711
LVWJ02000019
Bacteroidota
Lewinella sp. 4G2 [LVWJ]
273915
273989
+
Glu
TTC
[ENA]
¡û
>W1611042609
LZRN01000053
Bacteroidota
Gelidibacter algens [LZRN]
596
522
-
Glu
TTC
[ENA]
¡û
>W1710505785
FMTY01000003
Bacteroidota
Flavobacterium saliperosum [FMTY]
379817
379891
+
Glu
TTC
[ENA]
¡û
>W1710505786
FMTY01000003
Bacteroidota
Flavobacterium saliperosum [FMTY]
379909
379983
+
Glu
TTC
[ENA]
¡û
>W1710505787
FMTY01000003
Bacteroidota
Flavobacterium saliperosum [FMTY]
380001
380075
+
Glu
TTC
[ENA]
¡û
>W1710519764
FNEZ01000002
Bacteroidota
Flavobacterium noncentrifugens [FNEZ]
481017
481091
+
Glu
TTC
[ENA]
¡û
>W1710549178
FOEI01000002
Bacteroidota
Flavobacterium urocaniciphilum [FOEI]
581679
581753
+
Glu
TTC
[ENA]
¡û
>W1710549179
FOEI01000002
Bacteroidota
Flavobacterium urocaniciphilum [FOEI]
581783
581857
+
Glu
TTC
[ENA]
¡û
>W1710550191
FOFB01000023
Bacteroidota
Neolewinella agarilytica [FOFB]
43894
43820
-
Glu
TTC
[ENA]
¡û
>W1710550192
FOFB01000023
Bacteroidota
Neolewinella agarilytica [FOFB]
43646
43572
-
Glu
TTC
[ENA]
¡û
>W1710588391
FQZH01000004
Bacteroidota
Flavobacterium haoranii [FQZH]
153369
153295
-
Glu
TTC
[ENA]
¡û
>W1710593827
FRYK01000002
Bacteroidota
Flavobacterium cucumis [FRYK]
323204
323130
-
Glu
TTC
[ENA]
¡û
>W1710593828
FRYK01000002
Bacteroidota
Flavobacterium cucumis [FRYK]
323107
323033
-
Glu
TTC
[ENA]
¡û
>W1710637214
JRLU01000003
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
361519
361593
+
Glu
TTC
[ENA]
¡û
>W1710637215
JRLU01000003
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
361609
361683
+
Glu
TTC
[ENA]
¡û
>W1710637216
JRLU01000003
Bacteroidota
Flavobacterium cauense R2A-7 [JRLU]
361714
361788
+
Glu
TTC
[ENA]
¡û
>W1710637280
JRLW01000003
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
113178
113104
-
Glu
TTC
[ENA]
¡û
>W1710637281
JRLW01000003
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
113079
113007
-
Glu
TTC
[ENA]
¡û
>W1710637282
JRLW01000003
Bacteroidota
Flavobacterium suncheonense GH29-5 = DSM 17707 [JRLW]
112979
112905
-
Glu
TTC
[ENA]
¡û
>W1710637392
JRLZ01000001
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
407355
407429
+
Glu
TTC
[ENA]
¡û
>W1710637393
JRLZ01000001
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
407452
407526
+
Glu
TTC
[ENA]
¡û
>W1710637394
JRLZ01000001
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
407565
407639
+
Glu
TTC
[ENA]
¡û
>W1710637395
JRLZ01000001
Bacteroidota
Flavobacterium enshiense DK69 [JRLZ]
407678
407752
+
Glu
TTC
[ENA]
¡û
Select
Sequence ID
Genome ID
(or Accession No.)
Phylum/Class
(Sample source for ENV)
Species
Start
End
Direction
AA
Anticodon
Genome/Seq. Info.
Decision
Download Sequence
Representative sequence of each cluster
View ClustalW result
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